Clone BS05462 Report

Search the DGRC for BS05462

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptNab2-RA
Protein status:BS05462.pep: full length peptide match
Sequenced Size:3047

Clone Sequence Records

BS05462.3prime Sequence

995 bp (907 high quality bases) assembled on 2005-12-02

> BS05462.3prime
ATGGTCTAGAAAGCTTTTAGCCCAAAGATGCCACCCACTTGAATTTGCTC
TGCATCTCAGGATGGTAGAAGATGCACTCCAGCTTGTTTACGCAGTTCTT
GCCGAAGCGGCAGGGCTTGGGATGATAGAAGGTGCAGCCCAGCTTGGAAC
AATTCGGATAGTACTTGCACATGGTAGTCGCAGTCGTGGATGTAACAGGA
GCCGATATCGACTTGTAGTTCTGCACTGGGATGACGTGAGAGGATAGTGG
TGGAGCAGCAAGCTGGACATGGCTTAGATCCCTTTGACCGCCATGGGCGT
AGTTGCAGTCTATGCTCATGCAGGCCATGTCGAATTTGCACTTCGGATGC
GAGTACATGCACTTGTCCGCGAATTTGCAGTTGGGGAAAGACTTGCACGG
CGCCGTTGGATGATAGTACTCACAGAACTGCTTTGTGCAGTTTGGATGAT
ATTTGCAGCGCTCCTTGGGTTTGTTCACCTTCAGCACGGTGGAATCCACG
CTAACTGCGCTCAACGCCGGCAAGTTGTCGTATTTCCTGTCCTCCGGATT
GCGTATGGATACCCTGCGTCTCTCCGGAGCCGCGACATCACGATCGGGGC
TGCCAGAACGACGCTTCTTACTCGCACTCGGCTCGTCCTCACTTTTAAGA
GTGAAGCGAATGGGCGTGTGCTTGGCTTTGGTAGTTGTCGAAACGGAAGT
GGACGCACTGACAGATTTGGCGGCCGATGACGTCTCCGCTGAATTAGATC
TTACGGATTTCTCCTTGCTGGAAGCTTTCTTCTCCGCCCGCGCCTTTGGT
TTGGCTGGCAGCGGTGGAGTTGTTGAGCCTTCCTCGATTTTACCCTTATC
CTTATTGTCCTTGTGACCATTGGCCGCCGCTGGCTGGCGCTTGTTTGGTG
ATCGTTTCTTCGGTGACCCGTGCATTTCATCATCTTCATCGGTGTCATTT
TTTATGATGATCTTCTTGATTTCCTGAGGCTGACGGCGTACCTCG

BS05462.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5720-PA 3015 CG5720-RA 2037..3015 995..17 4895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 2200..3178 995..17 4895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24315592..24316073 514..995 2410 100 Plus
3R 32079331 3R 24315260..24315529 244..513 1350 100 Plus
3R 32079331 3R 24314972..24315198 17..243 1135 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:43:55 has no hits.

BS05462.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:04 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 2037..3015 17..995 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:51 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 2037..3015 17..995 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:53:14 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 2200..3178 17..995 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:07 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 2200..3178 17..995 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:07 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24314972..24315198 17..243 100 <- Plus
3R 24315260..24315529 244..513 100 <- Plus
3R 24315592..24316073 514..995 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:53:14 Download gff for BS05462.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20140694..20140920 17..243 100 <- Plus
arm_3R 20140982..20141251 244..513 100 <- Plus
arm_3R 20141314..20141795 514..995 100   Plus

BS05462.5prime Sequence

908 bp (810 high quality bases) assembled on 2005-12-02

> BS05462.5prime
GAAGTTATCAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGA
AGATGCGCAGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGA
TCGGCCGGTTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGT
GGCCAACAAGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCC
TAGGCGATCAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAA
AAGCTCCAAGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCG
CAAGTCTCGCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGC
GACCGCACCGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCC
TCAGATGCCATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGA
GCTTCTCGAGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAG
ACGAGATCCTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGAT
GCATCGGCCAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTC
AACTACTATCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAA
TCCAAAAGAAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAG
ATCGGGGATGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGC
GAGGGAGGAGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGG
AGGCTCACCACGAAAAGCTAAGAGCCCCATTATTTTTAACAGACGCGAGA
AGACACCCGGAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCGCCAG
GAGGAGGC

BS05462.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5720-PA 3015 CG5720-RA 1..790 17..806 3950 100 Plus
CG5720-PA 3015 CG5720-RA 791..893 806..908 490 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 162..1056 15..908 4435 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24317217..24317842 908..284 3065 99.7 Minus
3R 32079331 3R 24317896..24318121 284..59 1130 100 Minus
3R 32079331 3R 24318215..24318258 58..15 220 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:06:07 has no hits.

BS05462.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:06 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 1..893 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:52 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 1..893 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:14:50 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 156..1056 9..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:45 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 156..1056 9..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:45 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24317896..24318121 59..284 100 <- Minus
3R 24318215..24318264 9..58 94   Minus
3R 24317217..24317841 285..908 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:14:50 Download gff for BS05462.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20142939..20143563 285..908 99 <- Minus
arm_3R 20143618..20143843 59..284 100 <- Minus
arm_3R 20143937..20143986 9..58 94   Minus

BS05462.complete Sequence

3047 bp assembled on 2008-08-15

GenBank Submission: KX796904

> BS05462.complete
GAAGTTATCAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGA
AGATGCGCAGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGA
TCGGCCGGTTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGT
GGCCAACAAGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCC
TAGGCGATCAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAA
AAGCTCCAAGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCG
CAAGTCTCGCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGC
GACCGCACCGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCC
TCAGATGCCATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGA
GCTTCTCGAGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAG
ACGAGATCCTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGAT
GCATCGGCCAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTC
AACTACTATCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAA
TCCAAAAGAAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAG
ATCGGGGATGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGC
GAGGGAGGAGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGG
AGGCTCCACCACGAAAAGCTAAGAGCCCCATTATTTTTAACAGACGCGAG
AAGACACCCGAAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCGCCA
GGAGGAGGCGGAGGAGAAGAGCCCCAAAAAAGATTCTTCGGCTGACAAGG
CCAAGGAAGACCGGTCTGAAAGGCGATCGGTGCATGACCGTCTCGGTTCA
AAGGCCCAAACGCCGGCAGATCGTTCGCAGCGCAACCAAAAGGAGCTCTA
TGTGCCGACCCATCGGCGACGGAGCGAACCCGAGGCCACCAAAGAGCGCA
GTCAAAGAGAGCGCACCCGAGAACGACGCTCCAGCCGCGATACCTCTAGG
GACACTAACCGTAATCAGCGCCAGCGTCGTTCGCCTAGTCCGGAGGCTCC
AAGTACAAAGCAACGCATTGTCTCCCAAGTTATTGTGGCCGTTAACAAGC
CACCGGAGCCGTCGGACGATGAGGATATGGCCGAAAAGCCAGTCAACTCC
GTTATTAAGGTCAAGCCAAGACCAAATGTTTCTCCCAGACGACAGGCCTG
CAAGAACCTCCTGCTGCGAGCAGTGGCGGACGCGCAGCGTTCCACAATCC
TCGCCAAGACTTCGACACAGAAGGAGGACGAGGATGTGGGCAAGATCATA
AGTTCTCTAGGCAAGCGCAAGTCGGAGGATAAGAATGATCAGATTCGTAA
ACGGAATCGCGAGAGGAAACGAAGAAAGAGAAGTGCACAAGGCAACGAAC
TCTTCCGGCGCACCACTCGGGAATTAGTGGTAAATGTGACACAAAGGGAT
GGAAAGCGTGAACGGCGGTCCAACGAGCGTCGCGCCGAGATCAAAGTGGT
GGAGGAAGAATATACGCCAAGCCTAATGACTGAGGGCGTCGAGACGTATG
TGCCGCAATTGCTGACCAACGTGGATGAATTGGATTTGCACATCAGCTCC
CACGACGAGCCAAGTCCCAATTCCGGAGCCCTCAAGACTCAGTTTGTGGT
CACGTTAAACGGCGACAAAGCTCTCGGAGGTAAGAATGTCAAGGGAGGGG
CCTCTCGCAAGCGGCCGAGCAACTCTCGTAAACGATCCACCTCACCCGTA
TCCACGCCACAAGTGTCCTCCTCTAATATTGAGCCCACATCTACGACGGT
TGACAAGCGACGCCGATCCAATCGGGATAGAAGCTTCTCGCCATCGCCGA
GACAGAGCAGTGGGTCACCCTCCCTGCCGACAACACGCAGCATCAATCGC
AACGAGGTACGCCGTCAGCCTCAGGAAATCAAGAAGATCATCATAAAAAA
TGACACCGATGAAGATGATGAAATGCACGGGTCACCGAAGAAACGATCAC
CAAACAAGCGCCAGCCAGCGGCGGCCAATGGTCACAAGGACAATAAGGAT
AAGGGTAAAATCGAGGAAGGCTCAACAACTCCACCGCTGCCAGCCAAACC
AAAGGCGCGGGCGGAGAAGAAAGCTTCCAGCAAGGAGAAATCCGTAAGAT
CTAATTCAGCGGAGACGTCATCGGCCGCCAAATCTGTCAGTGCGTCCACT
TCCGTTTCGACAACTACCAAAGCCAAGCACACGCCCATTCGCTTCACTCT
TAAAAGTGAGGACGAGCCGAGTGCGAGTAAGAAGCGTCGTTCTGGCAGCC
CCGATCGTGATGTCGCGGCTCCGGAGAGACGCAGGGTATCCATACGCAAT
CCGGAGGACAGGAAATACGACAACTTGCCGGCGTTGAGCGCAGTTAGCGT
GGATTCCACCGTGCTGAAGGTGAACAAACCCAAGGAGCGCTGCAAATATC
ATCCAAACTGCACAAAGCAGTTCTGTGAGTACTATCATCCAACGGCGCCG
TGCAAGTCTTTCCCCAACTGCAAATTCGCGGACAAGTGCATGTACTCGCA
TCCGAAGTGCAAATTCGACATGGCCTGCATGAGCATAGACTGCAACTACG
CCCATGGCGGTCAAAGGGATCTAAGCCATGTCCAGCTTGCTGCTCCACCA
CTATCCTCTCACGTCATCCCAGTGCAGAACTACAAGTCGATATCGGCTCC
TGTTACATCCACGACTGCGACTACCATGTGCAAGTACTATCCGAATTGTT
CCAAGCTGGGCTGCACCTTCTATCATCCCAAGCCCTGCCGCTTCGGCAAG
AACTGCGTAAACAAGCTGGAGTGCATCTTCTACCATCCTGAGATGCAGAG
CAAATTCAAGTGGGTGGCATCTTTGGGCTAAAAGCTTTCTAGACCAT

BS05462.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3015 CG5720-PA 1..3015 17..3031 15075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 162..3178 15..3031 15085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24315592..24317842 2534..284 11255 100 Minus
3R 32079331 3R 24315260..24315529 2804..2535 1350 100 Minus
3R 32079331 3R 24314972..24315198 3031..2805 1135 100 Minus
3R 32079331 3R 24317896..24318121 284..59 1130 100 Minus
3R 32079331 3R 24318215..24318258 58..15 220 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:53:29 has no hits.

BS05462.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:41 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
CG5720-RA 157..3179 9..3031 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:48 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 164..3176 17..3029 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:48 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
CG5720-RA 165..3177 17..3029 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:17 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 164..3176 17..3029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:17 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24314974..24315198 2805..3029 100 <- Minus
3R 24315260..24315529 2535..2804 100 <- Minus
3R 24315592..24317841 285..2534 100 <- Minus
3R 24317896..24318121 59..284 100 <- Minus
3R 24318215..24318256 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:48 Download gff for BS05462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20140696..20140920 2805..3029 100 <- Minus
arm_3R 20140982..20141251 2535..2804 100 <- Minus
arm_3R 20141314..20143563 285..2534 100 <- Minus
arm_3R 20143618..20143843 59..284 100 <- Minus
arm_3R 20143937..20143978 17..58 100   Minus

BS05462.pep Sequence

Translation from 16 to 3030

> BS05462.pep
MECNLGSEIGQKMRSAVKAKLLELGTGGSAGFIDDELPDYVMVMVANKRT
KQQMNAELNLFLGDQTDLFVTWLHEVLQKLQEVTLPTSSASSKKRKSRGQ
EKDKKGSKKDKRPHRKSGDELSEPQPSSSDAMPIVSSITDVFAEELLEKA
KKTMDIDLSAKDEILHKKKNRKSIEDEDASANRALDVPAVSEIISTTIGV
NRQKDLAELAEIQKKIHAAKKHLRQIGEIGDESDEYDEDLLNLSAREESV
DQEPEEDPPKLEAPPRKAKSPIIFNRREKTPEKRPEAEPEIDSRQEEAEE
KSPKKDSSADKAKEDRSERRSVHDRLGSKAQTPADRSQRNQKELYVPTHR
RRSEPEATKERSQRERTRERRSSRDTSRDTNRNQRQRRSPSPEAPSTKQR
IVSQVIVAVNKPPEPSDDEDMAEKPVNSVIKVKPRPNVSPRRQACKNLLL
RAVADAQRSTILAKTSTQKEDEDVGKIISSLGKRKSEDKNDQIRKRNRER
KRRKRSAQGNELFRRTTRELVVNVTQRDGKRERRSNERRAEIKVVEEEYT
PSLMTEGVETYVPQLLTNVDELDLHISSHDEPSPNSGALKTQFVVTLNGD
KALGGKNVKGGASRKRPSNSRKRSTSPVSTPQVSSSNIEPTSTTVDKRRR
SNRDRSFSPSPRQSSGSPSLPTTRSINRNEVRRQPQEIKKIIIKNDTDED
DEMHGSPKKRSPNKRQPAAANGHKDNKDKGKIEEGSTTPPLPAKPKARAE
KKASSKEKSVRSNSAETSSAAKSVSASTSVSTTTKAKHTPIRFTLKSEDE
PSASKKRRSGSPDRDVAAPERRRVSIRNPEDRKYDNLPALSAVSVDSTVL
KVNKPKERCKYHPNCTKQFCEYYHPTAPCKSFPNCKFADKCMYSHPKCKF
DMACMSIDCNYAHGGQRDLSHVQLAAPPLSSHVIPVQNYKSISAPVTSTT
ATTMCKYYPNCSKLGCTFYHPKPCRFGKNCVNKLECIFYHPEMQSKFKWV
ASLG*

BS05462.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-PA 1004 CG5720-PA 1..1004 1..1004 5164 100 Plus
CG7971-PG 1062 CG7971-PG 226..827 167..830 237 19.6 Plus
CG7971-PA 1062 CG7971-PA 226..827 167..830 237 19.6 Plus
CG7971-PC 1107 CG7971-PC 226..827 167..830 237 19.6 Plus
CG7971-PF 1655 CG7971-PF 451..1052 167..830 237 19.6 Plus
CG7971-PG 1062 CG7971-PG 165..942 11..853 222 20.4 Plus
CG7971-PA 1062 CG7971-PA 165..942 11..853 222 20.4 Plus
CG7971-PC 1107 CG7971-PC 165..942 11..853 222 20.4 Plus
CG7971-PG 1062 CG7971-PG 27..689 112..824 205 18.1 Plus
CG7971-PA 1062 CG7971-PA 27..689 112..824 205 18.1 Plus
CG7971-PC 1107 CG7971-PC 27..689 112..824 205 18.1 Plus