Clone Sequence Records
BS05465.3prime Sequence
573 bp (572 high quality bases) assembled on 2005-12-02
> BS05465.3prime
ATGGTCTAGAAAGCTTTTAGGGCTTGCTGTCGAAGCCAGCGAAATCCGAC
GCCTCCGACTCATCGTCATCCCTCTCGACGCCGATGCAATGGATTCCAGT
CCGCAGCATAGGAGTACCCTTGCCCTTGCCCAACACCCGAGCGGCTATGA
CCAGCTGTAGCAGCTCCTTGGCGTTCGATGAGCTGACAATGTGCAGGACC
TCGCGCAACAGCTTCTCCTTGTAGGCAAAGAACTCGATTTTCATTTCGAA
AAAGTCGTGCTCATCATGCTTGGTGCCCTCGAACTCCGTGATCCTGCAGT
GCAAGCTCGGCGTGGCGCTAATCACCGGCTCAAATTTGCTGGCCAGCGTC
TTGGCATCGCCGAATAGCGACGTCGGCAGCTTCAGTTCGATCAGATAGCG
ATGCCTGATCTGCAGAAAGCCCAGGCTCACCACAATCGTGTCACCAGACC
TTTGGTATGTCACACAGCTGTCCGATTCGAAGTCATCCTTCACCGTGTTC
GTGTCGAAGTGCACATGGTGGTCTTGATGCTCCACATTTTCAATGGACTC
GTCGCACATGTCGACTGATAACT
BS05465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-PA | 543 | CG6983-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-RB | 1740 | CG6983-RB | 193..735 | 559..17 | 2715 | 100 | Minus |
CG6983-RA | 1302 | CG6983-RA | 193..735 | 559..17 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8444047..8444557 | 17..527 | 2555 | 100 | Plus |
3L | 28110227 | 3L | 8449149..8449185 | 523..559 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:08:43 has no hits.
BS05465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:11 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:59 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:45 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 184..735 | 17..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:32 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 184..735 | 17..569 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:32 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8444047..8444552 | 17..522 | 100 | <- | Plus |
3L | 8449149..8449194 | 523..569 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:45 Download gff for
BS05465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8437147..8437652 | 17..522 | 100 | <- | Plus |
arm_3L | 8442249..8442294 | 523..569 | 91 | | Plus |
BS05465.5prime Sequence
573 bp (572 high quality bases) assembled on 2005-11-29
> BS05465.5prime
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCTAAAAGCTTTCTAGACC
BS05465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-PA | 543 | CG6983-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-RB | 1740 | CG6983-RB | 193..735 | 17..559 | 2715 | 100 | Plus |
CG6983-RA | 1302 | CG6983-RA | 193..735 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8444047..8444557 | 559..49 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 8449149..8449185 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:49:01 has no hits.
BS05465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:12 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:00 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:18 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 184..735 | 7..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:53 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 184..735 | 7..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:53 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8444047..8444552 | 54..559 | 100 | <- | Minus |
3L | 8449149..8449194 | 7..53 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:18 Download gff for
BS05465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8437147..8437652 | 54..559 | 100 | <- | Minus |
arm_3L | 8442249..8442294 | 7..53 | 91 | | Minus |
BS05465.complete Sequence
575 bp (575 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635126
> BS05465.complete
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCTAAAAGCTTTCTAGACCAT
BS05465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-RB | 543 | CG6983-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
CG6983-RA | 543 | CG6983-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-RB | 1740 | CG6983-RB | 193..735 | 17..559 | 2715 | 100 | Plus |
CG6983-RA | 1302 | CG6983-RA | 193..735 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8444047..8444557 | 559..49 | 2555 | 100 | Minus |
3L | 28110227 | 3L | 8449149..8449185 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:17:48 has no hits.
BS05465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:09 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:08 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 179..730 | 7..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:23:22 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 193..733 | 17..557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:10 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 179..730 | 7..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:10 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6983-RA | 193..733 | 17..557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:10 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8444049..8444552 | 54..557 | 100 | <- | Minus |
3L | 8449149..8449185 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:23:22 Download gff for
BS05465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8437149..8437652 | 54..557 | 100 | <- | Minus |
arm_3L | 8442249..8442285 | 17..53 | 100 | | Minus |
BS05465.pep Sequence
Translation from 16 to 558
> BS05465.pep
MCDESIENVEHQDHHVHFDTNTVKDDFESDSCVTYQRSGDTIVVSLGFLQ
IRHRYLIELKLPTSLFGDAKTLASKFEPVISATPSLHCRITEFEGTKHDE
HDFFEMKIEFFAYKEKLLREVLHIVSSSNAKELLQLVIAARVLGKGKGTP
MLRTGIHCIGVERDDDESEASDFAGFDSKP*
BS05465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6983-PB | 180 | CG6983-PB | 1..180 | 1..180 | 939 | 100 | Plus |
CG6983-PA | 180 | CG6983-PA | 1..180 | 1..180 | 939 | 100 | Plus |