Clone BS05465 Report

Search the DGRC for BS05465

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG6983-RA
Protein status:BS05465.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05465.3prime Sequence

573 bp (572 high quality bases) assembled on 2005-12-02

> BS05465.3prime
ATGGTCTAGAAAGCTTTTAGGGCTTGCTGTCGAAGCCAGCGAAATCCGAC
GCCTCCGACTCATCGTCATCCCTCTCGACGCCGATGCAATGGATTCCAGT
CCGCAGCATAGGAGTACCCTTGCCCTTGCCCAACACCCGAGCGGCTATGA
CCAGCTGTAGCAGCTCCTTGGCGTTCGATGAGCTGACAATGTGCAGGACC
TCGCGCAACAGCTTCTCCTTGTAGGCAAAGAACTCGATTTTCATTTCGAA
AAAGTCGTGCTCATCATGCTTGGTGCCCTCGAACTCCGTGATCCTGCAGT
GCAAGCTCGGCGTGGCGCTAATCACCGGCTCAAATTTGCTGGCCAGCGTC
TTGGCATCGCCGAATAGCGACGTCGGCAGCTTCAGTTCGATCAGATAGCG
ATGCCTGATCTGCAGAAAGCCCAGGCTCACCACAATCGTGTCACCAGACC
TTTGGTATGTCACACAGCTGTCCGATTCGAAGTCATCCTTCACCGTGTTC
GTGTCGAAGTGCACATGGTGGTCTTGATGCTCCACATTTTCAATGGACTC
GTCGCACATGTCGACTGATAACT

BS05465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-PA 543 CG6983-RA 1..543 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-RB 1740 CG6983-RB 193..735 559..17 2715 100 Minus
CG6983-RA 1302 CG6983-RA 193..735 559..17 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8444047..8444557 17..527 2555 100 Plus
3L 28110227 3L 8449149..8449185 523..559 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:08:43 has no hits.

BS05465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:11 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:40:59 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:45 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 184..735 17..569 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:32 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 184..735 17..569 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:32 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8444047..8444552 17..522 100 <- Plus
3L 8449149..8449194 523..569 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:45 Download gff for BS05465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8437147..8437652 17..522 100 <- Plus
arm_3L 8442249..8442294 523..569 91   Plus

BS05465.5prime Sequence

573 bp (572 high quality bases) assembled on 2005-11-29

> BS05465.5prime
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCTAAAAGCTTTCTAGACC

BS05465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-PA 543 CG6983-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-RB 1740 CG6983-RB 193..735 17..559 2715 100 Plus
CG6983-RA 1302 CG6983-RA 193..735 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8444047..8444557 559..49 2555 100 Minus
3L 28110227 3L 8449149..8449185 53..17 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:49:01 has no hits.

BS05465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:12 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:00 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:37:18 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 184..735 7..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:53 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 184..735 7..559 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:53 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8444047..8444552 54..559 100 <- Minus
3L 8449149..8449194 7..53 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:18 Download gff for BS05465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8437147..8437652 54..559 100 <- Minus
arm_3L 8442249..8442294 7..53 91   Minus

BS05465.complete Sequence

575 bp (575 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635126

> BS05465.complete
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCTAAAAGCTTTCTAGACCAT

BS05465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-RB 543 CG6983-PB 1..543 17..559 2715 100 Plus
CG6983-RA 543 CG6983-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-RB 1740 CG6983-RB 193..735 17..559 2715 100 Plus
CG6983-RA 1302 CG6983-RA 193..735 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8444047..8444557 559..49 2555 100 Minus
3L 28110227 3L 8449149..8449185 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:17:48 has no hits.

BS05465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:09 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:08 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 179..730 7..559 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:23:22 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 193..733 17..557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:10 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 179..730 7..559 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:10 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
CG6983-RA 193..733 17..557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:10 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8444049..8444552 54..557 100 <- Minus
3L 8449149..8449185 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:23:22 Download gff for BS05465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8437149..8437652 54..557 100 <- Minus
arm_3L 8442249..8442285 17..53 100   Minus

BS05465.pep Sequence

Translation from 16 to 558

> BS05465.pep
MCDESIENVEHQDHHVHFDTNTVKDDFESDSCVTYQRSGDTIVVSLGFLQ
IRHRYLIELKLPTSLFGDAKTLASKFEPVISATPSLHCRITEFEGTKHDE
HDFFEMKIEFFAYKEKLLREVLHIVSSSNAKELLQLVIAARVLGKGKGTP
MLRTGIHCIGVERDDDESEASDFAGFDSKP*

BS05465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6983-PB 180 CG6983-PB 1..180 1..180 939 100 Plus
CG6983-PA 180 CG6983-PA 1..180 1..180 939 100 Plus