Clone Sequence Records
BS05466.3prime Sequence
828 bp (737 high quality bases) assembled on 2005-12-02
> BS05466.3prime
ATGGTCTAGAAAGCTTTTAGTAGCGTCGTCGGTCACGCTCTCCTCGCGAG
TCCCGTTCCCGCTGGTCGTGACGGCCACGGTCACGTTCTCGCTCTCGTTC
CCTATCCCGGCGATCTCTGTCGCCGTCCCTCTCGCGCTCCCTGATACTGT
CGCGATCTTGGCGCTCTCGTTCGCGATCGTGGCGTCCATTGTTTTGCCGA
CGGTCATAGTCCTCGTTGTGGGTGTCCCGATTGCGCACCCTATTTCGCTG
GCGGTCGTAGTCTTCCAGTTCGTCGTAGTAATCCCGGGAACGGGCGCTGT
TGCCCTGCCCAGATCTTCGCTCGCGCTCCCGACTGCGGGACCTTGACTTG
GAGCGAACTCTCCGTGGTCGTCTCACTGCTGTCGAATTCTCCTTAGGCCG
GTTGGTCTCGTCTGCCTTCTCCTCGTCGCTGGGCAGTTCGTCGTCCAAGT
CCTCATCCAGCACTGACACCTTGGGCTCGATTTCGTTGTTTTCCTCGAGA
ATGGAGCGCTTCTGGATGCGGGGCAGTATAATGTCGCAGACACGGTCGTT
GCGCAGCAGTTCGTCAATGTACTCATCCATGTAGACAATCTCGAACTGGC
CGGCGCGATTCTGGCGGCGCAGCTTTCGATTGTCTATGTACAACGGCTCC
AGGTACTTGTAGCAGTCCAGGGCAGCTCCTGTGAGCCGTAGATAGAAGGC
TCCCAATGCTCGAACGTACTTGAACTCCTCGTTCTTGATAAACTCCACTA
CGATGTCCTTTTCCGGCTGAATCTGCAGCATCTTGAGTGTGAGGCAGAGG
AACTGGGTGGGCTTGATGNTGCCGCCGT
BS05466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30342-PA | 993 | CG30342-RA | 182..993 | 828..17 | 4041 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp38-RA | 1196 | CG30342-RA | 354..1167 | 828..15 | 4059 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9144309..9145122 | 828..15 | 4059 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:49:49 has no hits.
BS05466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:13 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-PA | 182..993 | 17..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:02 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-PA | 182..993 | 17..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:17 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 354..1172 | 7..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:39 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 354..1172 | 7..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:39 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9144309..9145127 | 7..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:17 Download gff for
BS05466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5031814..5032632 | 7..828 | 99 | | Minus |
BS05466.5prime Sequence
892 bp (781 high quality bases) assembled on 2005-12-02
> BS05466.5prime
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAACAATGGACGCCACGATC
GCGAACGAGAGCNGCAAGATCGCGACAGTATCAGGGAGCGCG
BS05466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30342-PA | 993 | CG30342-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG30342-PA | 993 | CG30342-RA | 816..877 | 831..892 | 266 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp38-RA | 1196 | CG30342-RA | 173..1049 | 17..892 | 4334 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9144128..9145004 | 17..892 | 4309 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:38:38 has no hits.
BS05466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:14 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:03 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:35:31 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 173..1049 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:43 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 173..1049 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:43 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9144128..9145004 | 17..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:35:31 Download gff for
BS05466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5031633..5032509 | 17..892 | 99 | | Plus |
BS05466.complete Sequence
1025 bp (1025 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635127
> BS05466.complete
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAAACAATGGACGCCACGAT
CGCGAACGAGAGCGCCAAGATCGCGACAGTATCAGGGAGCGCGAGAGGGA
CGGCGACAGAGATCGCCGGGATAGGGAACGAGAGCGAGAACGTGACCGTG
GCCGTCACGACCAGCGGGAACGGGACTCGCGAGGAGAGCGTGACCGACGA
CGCTACTAAAAGCTTTCTAGACCAT
BS05466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp38-RA | 993 | CG30342-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp38-RA | 1196 | CG30342-RA | 173..1167 | 17..1011 | 4975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9144128..9145122 | 17..1011 | 4975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:04:51 has no hits.
BS05466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:08 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:06 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-RA | 170..1169 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:01 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 173..1163 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:08 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30342-RA | 170..1169 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:33 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp38-RA | 173..1163 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:33 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9144128..9145118 | 17..1007 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:01 Download gff for
BS05466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5031633..5032623 | 17..1007 | 100 | | Plus |
BS05466.pep Sequence
Translation from 16 to 1008
> BS05466.pep
MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDK
AMELRFVGGVYGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVR
ALGAFYLRLTGAALDCYKYLEPLYIDNRKLRRQNRAGQFEIVYMDEYIDE
LLRNDRVCDIILPRIQKRSILEENNEIEPKVSVLDEDLDDELPSDEEKAD
ETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSARSRDYYDELED
YDRQRNRVRNRDTHNEDYDRRQNNGRHDRERERQDRDSIRERERDGDRDR
RDRERERERDRGRHDQRERDSRGERDRRRY*
BS05466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp38-PA | 330 | CG30342-PA | 1..330 | 1..330 | 1722 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 420..623 | 127..329 | 177 | 27.1 | Plus |
| CG6340-PB | 513 | CG6340-PB | 60..192 | 193..324 | 176 | 32.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 479..641 | 166..329 | 174 | 28.3 | Plus |
| SF1-PC | 323 | CG5836-PC | 33..133 | 217..329 | 172 | 41.5 | Plus |
| SF1-PB | 347 | CG5836-PB | 33..133 | 217..329 | 172 | 41.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 266..419 | 166..329 | 169 | 25.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 281..447 | 163..329 | 167 | 26 | Plus |
| CG2839-PA | 826 | CG2839-PA | 320..475 | 164..329 | 167 | 25.3 | Plus |
| SF1-PC | 323 | CG5836-PC | 48..172 | 195..328 | 165 | 35.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 302..464 | 164..329 | 161 | 24.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 356..524 | 164..329 | 160 | 24.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 473..629 | 166..329 | 160 | 28.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 364..530 | 166..329 | 159 | 24.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 377..541 | 166..329 | 157 | 26.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 497..657 | 172..329 | 156 | 23 | Plus |
| CG2839-PA | 826 | CG2839-PA | 532..687 | 172..329 | 156 | 22.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 531..671 | 189..329 | 155 | 26.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 563..725 | 164..329 | 155 | 24.4 | Plus |
| SF1-PC | 323 | CG5836-PC | 1..166 | 181..328 | 153 | 33.5 | Plus |
