Clone BS05467 Report

Search the DGRC for BS05467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha2-RA
Protein status:BS05467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05467.3prime Sequence

735 bp (734 high quality bases) assembled on 2005-12-02

> BS05467.3prime
ATGGTCTAGAAAGCTTTTAGGGGATGCTGGCCAAGTAGTCCTTGATTGAG
GCGGGGTCCAGACGCTGGAATCCGTTCTGATCGCAGATTCCGATCTCAAT
GTTGTCGGCAGTCATTTTTCCCTCAAAACCTTCTTTCAGCGTAAGGATGG
CGGTGTGAACAGCGTCGTCCAGCTCCAGATCTTCGCTGTAGCGCTTCTCC
AGGAAAGTTTTGCCGTTCACTGCGTTCTTGCCCATGGCAGTGGCCTTCCA
GGCGAAGTAGGCGCCCGAAGGATCGGATTGGTAGAGATACGGACGATCAT
TGTCCCAGCCGCAGATCAGTAGGGAAACGCCAAAGGGACGAACGCCACCG
GACTGAGTGTACTCCTGCATGAGCGTGGCCACGCGCTGCACCAGCTGTGA
CACTGGAATCGGCTCCTTGTAGGTCAGGTAGTACGTCTGGGCGATCTTGC
GGGCCTGCTTGACCAGCAGGCGGTAGTCCGGACCCATTCCCGAGTACACC
ATGCCGATGTGGTTGTAGATCATCTCCACGCGATGTACACTGTGCTGCTC
ATACAGCGGTGACTTGTGTTTGTTCTCTGTGGCAATGACGACGCCGTTGG
AAGCTATAATGCCCACGGAGGGAGCTCCGCCAGATACGGCCGCCAATGCA
TACTCCAGTTGGACGAGTTTTCCGGAAGGACTGAACGTGGTCAACGAAAA
GCTGTATCGTTCGGTAGCCATGTCGACTGATAACT

BS05467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5266-PA 705 Pros25-RA 1..705 721..17 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 920 CG5266-RA 121..826 721..16 3530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12431743..12432001 606..348 1295 100 Minus
3R 32079331 3R 12432286..12432462 192..16 885 100 Minus
3R 32079331 3R 12432066..12432222 348..192 785 100 Minus
3R 32079331 3R 12431581..12431660 683..604 400 100 Minus
3R 32079331 3R 12431441..12431481 721..681 205 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:51:11 has no hits.

BS05467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:15 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 1..705 17..721 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:05 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 1..705 17..721 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:18 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..829 11..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:29 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..829 11..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:29 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12431433..12431481 681..729 91 -> Minus
3R 12431584..12431660 604..680 100 -> Minus
3R 12431746..12432001 348..603 100 -> Minus
3R 12432067..12432222 192..347 100 -> Minus
3R 12432287..12432465 11..191 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:18 Download gff for BS05467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8257789..8257944 192..347 100 -> Minus
arm_3R 8257468..8257723 348..603 100 -> Minus
arm_3R 8257155..8257203 681..729 91 -> Minus
arm_3R 8257306..8257382 604..680 100 -> Minus
arm_3R 8258009..8258187 11..191 98   Minus

BS05467.5prime Sequence

735 bp (734 high quality bases) assembled on 2005-12-02

> BS05467.5prime
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCTAAAAGCTTTCTAGACC

BS05467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5266-PA 705 Pros25-RA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 920 CG5266-RA 121..826 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12431743..12432001 132..390 1295 100 Plus
3R 32079331 3R 12432286..12432462 546..722 885 100 Plus
3R 32079331 3R 12432066..12432222 390..546 785 100 Plus
3R 32079331 3R 12431581..12431660 55..134 400 100 Plus
3R 32079331 3R 12431441..12431481 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:35:09 has no hits.

BS05467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:16 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:06 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5266-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:16 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..829 9..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:36 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 113..829 9..727 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:36 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12431433..12431481 9..57 91 -> Plus
3R 12431584..12431660 58..134 100 -> Plus
3R 12431746..12432001 135..390 100 -> Plus
3R 12432067..12432222 391..546 100 -> Plus
3R 12432287..12432465 547..727 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:16 Download gff for BS05467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8257155..8257203 9..57 91 -> Plus
arm_3R 8257306..8257382 58..134 100 -> Plus
arm_3R 8257468..8257723 135..390 100 -> Plus
arm_3R 8257789..8257944 391..546 100 -> Plus
arm_3R 8258009..8258187 547..727 98   Plus

BS05467.complete Sequence

737 bp (737 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635128

> BS05467.complete
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCTAAAAGCTTTCTAGACCAT

BS05467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 705 CG5266-PA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-RA 920 CG5266-RA 121..826 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12431743..12432001 132..390 1295 100 Plus
3R 32079331 3R 12432286..12432462 546..722 885 100 Plus
3R 32079331 3R 12432066..12432222 390..546 785 100 Plus
3R 32079331 3R 12431581..12431660 55..134 400 100 Plus
3R 32079331 3R 12431441..12431481 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:20:47 has no hits.

BS05467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:09 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
Pros25-RA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:45 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
Pros25-RA 109..825 9..727 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:39 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 121..823 17..719 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:10 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
Pros25-RA 109..825 9..727 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:44 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha2-RA 121..823 17..719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:44 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12431441..12431481 17..57 100 -> Plus
3R 12431584..12431660 58..134 100 -> Plus
3R 12431746..12432001 135..390 100 -> Plus
3R 12432067..12432222 391..546 100 -> Plus
3R 12432287..12432459 547..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:39 Download gff for BS05467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8257163..8257203 17..57 100 -> Plus
arm_3R 8257306..8257382 58..134 100 -> Plus
arm_3R 8257468..8257723 135..390 100 -> Plus
arm_3R 8257789..8257944 391..546 100 -> Plus
arm_3R 8258009..8258181 547..719 100   Plus

BS05467.pep Sequence

Translation from 16 to 720

> BS05467.pep
MATERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATEN
KHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLT
YKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSD
PSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE
GKMTADNIEIGICDQNGFQRLDPASIKDYLASIP*

BS05467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha2-PA 234 CG5266-PA 1..234 1..234 1214 100 Plus
Prosalpha4-PA 249 CG3422-PA 2..234 3..233 368 36.4 Plus
Prosalpha4T2-PB 252 CG4569-PB 3..186 4..186 358 37.5 Plus
Prosalpha4T2-PA 252 CG4569-PA 3..186 4..186 358 37.5 Plus
Prosalpha5-PB 244 CG10938-PB 3..219 1..210 342 33.2 Plus