Clone Sequence Records
BS05467.3prime Sequence
735 bp (734 high quality bases) assembled on 2005-12-02
> BS05467.3prime
ATGGTCTAGAAAGCTTTTAGGGGATGCTGGCCAAGTAGTCCTTGATTGAG
GCGGGGTCCAGACGCTGGAATCCGTTCTGATCGCAGATTCCGATCTCAAT
GTTGTCGGCAGTCATTTTTCCCTCAAAACCTTCTTTCAGCGTAAGGATGG
CGGTGTGAACAGCGTCGTCCAGCTCCAGATCTTCGCTGTAGCGCTTCTCC
AGGAAAGTTTTGCCGTTCACTGCGTTCTTGCCCATGGCAGTGGCCTTCCA
GGCGAAGTAGGCGCCCGAAGGATCGGATTGGTAGAGATACGGACGATCAT
TGTCCCAGCCGCAGATCAGTAGGGAAACGCCAAAGGGACGAACGCCACCG
GACTGAGTGTACTCCTGCATGAGCGTGGCCACGCGCTGCACCAGCTGTGA
CACTGGAATCGGCTCCTTGTAGGTCAGGTAGTACGTCTGGGCGATCTTGC
GGGCCTGCTTGACCAGCAGGCGGTAGTCCGGACCCATTCCCGAGTACACC
ATGCCGATGTGGTTGTAGATCATCTCCACGCGATGTACACTGTGCTGCTC
ATACAGCGGTGACTTGTGTTTGTTCTCTGTGGCAATGACGACGCCGTTGG
AAGCTATAATGCCCACGGAGGGAGCTCCGCCAGATACGGCCGCCAATGCA
TACTCCAGTTGGACGAGTTTTCCGGAAGGACTGAACGTGGTCAACGAAAA
GCTGTATCGTTCGGTAGCCATGTCGACTGATAACT
BS05467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..705 | 721..17 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..826 | 721..16 | 3530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 606..348 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 12432286..12432462 | 192..16 | 885 | 100 | Minus |
3R | 32079331 | 3R | 12432066..12432222 | 348..192 | 785 | 100 | Minus |
3R | 32079331 | 3R | 12431581..12431660 | 683..604 | 400 | 100 | Minus |
3R | 32079331 | 3R | 12431441..12431481 | 721..681 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:51:11 has no hits.
BS05467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:15 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:05 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..721 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:03:18 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 11..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:29 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 11..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:29 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431433..12431481 | 681..729 | 91 | -> | Minus |
3R | 12431584..12431660 | 604..680 | 100 | -> | Minus |
3R | 12431746..12432001 | 348..603 | 100 | -> | Minus |
3R | 12432067..12432222 | 192..347 | 100 | -> | Minus |
3R | 12432287..12432465 | 11..191 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:03:18 Download gff for
BS05467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257789..8257944 | 192..347 | 100 | -> | Minus |
arm_3R | 8257468..8257723 | 348..603 | 100 | -> | Minus |
arm_3R | 8257155..8257203 | 681..729 | 91 | -> | Minus |
arm_3R | 8257306..8257382 | 604..680 | 100 | -> | Minus |
arm_3R | 8258009..8258187 | 11..191 | 98 | | Minus |
BS05467.5prime Sequence
735 bp (734 high quality bases) assembled on 2005-12-02
> BS05467.5prime
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCTAAAAGCTTTCTAGACC
BS05467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..826 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 132..390 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432462 | 546..722 | 885 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 390..546 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 55..134 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:35:09 has no hits.
BS05467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:16 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:06 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:16 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:54:36 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 9..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:36 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431433..12431481 | 9..57 | 91 | -> | Plus |
3R | 12431584..12431660 | 58..134 | 100 | -> | Plus |
3R | 12431746..12432001 | 135..390 | 100 | -> | Plus |
3R | 12432067..12432222 | 391..546 | 100 | -> | Plus |
3R | 12432287..12432465 | 547..727 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:16 Download gff for
BS05467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257155..8257203 | 9..57 | 91 | -> | Plus |
arm_3R | 8257306..8257382 | 58..134 | 100 | -> | Plus |
arm_3R | 8257468..8257723 | 135..390 | 100 | -> | Plus |
arm_3R | 8257789..8257944 | 391..546 | 100 | -> | Plus |
arm_3R | 8258009..8258187 | 547..727 | 98 | | Plus |
BS05467.complete Sequence
737 bp (737 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635128
> BS05467.complete
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCTAAAAGCTTTCTAGACCAT
BS05467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 705 | CG5266-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..826 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 132..390 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432462 | 546..722 | 885 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 390..546 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 55..134 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:20:47 has no hits.
BS05467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:09 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:45 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 109..825 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:12:39 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 121..823 | 17..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:10 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 109..825 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:44 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 121..823 | 17..719 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:44 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431441..12431481 | 17..57 | 100 | -> | Plus |
3R | 12431584..12431660 | 58..134 | 100 | -> | Plus |
3R | 12431746..12432001 | 135..390 | 100 | -> | Plus |
3R | 12432067..12432222 | 391..546 | 100 | -> | Plus |
3R | 12432287..12432459 | 547..719 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:12:39 Download gff for
BS05467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257163..8257203 | 17..57 | 100 | -> | Plus |
arm_3R | 8257306..8257382 | 58..134 | 100 | -> | Plus |
arm_3R | 8257468..8257723 | 135..390 | 100 | -> | Plus |
arm_3R | 8257789..8257944 | 391..546 | 100 | -> | Plus |
arm_3R | 8258009..8258181 | 547..719 | 100 | | Plus |
BS05467.pep Sequence
Translation from 16 to 720
> BS05467.pep
MATERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATEN
KHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLT
YKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSD
PSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE
GKMTADNIEIGICDQNGFQRLDPASIKDYLASIP*
BS05467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-PA | 234 | CG5266-PA | 1..234 | 1..234 | 1214 | 100 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 2..234 | 3..233 | 368 | 36.4 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 3..186 | 4..186 | 358 | 37.5 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 3..186 | 4..186 | 358 | 37.5 | Plus |
Prosalpha5-PB | 244 | CG10938-PB | 3..219 | 1..210 | 342 | 33.2 | Plus |