Clone Sequence Records
BS05469.5prime Sequence
609 bp (608 high quality bases) assembled on 2005-12-02
> BS05469.5prime
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACC
BS05469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..579 | 17..595 | 2845 | 99.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 25..206 | 41..222 | 535 | 91.7 | Plus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 467..534 | 215 | 92.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 242..321 | 175 | 88.7 | Plus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 185..249 | 175 | 90.7 | Plus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 185..249 | 175 | 90.7 | Plus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 182..237 | 155 | 91 | Plus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 182..237 | 155 | 91 | Plus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 182..237 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1266 | 16..602 | 2875 | 99.3 | Plus |
Rac2-RA | 1299 | CG8556-RA | 680..1266 | 16..602 | 2875 | 99.3 | Plus |
Rac1-RB | 1805 | CG2248-RB | 337..919 | 16..598 | 1585 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433925..7434511 | 602..16 | 2875 | 99.3 | Minus |
3L | 28110227 | 3L | 1301829..1302347 | 534..16 | 1575 | 86.9 | Minus |
X | 23542271 | X | 19697956..19698190 | 15..249 | 485 | 80.4 | Plus |
3R | 32079331 | 3R | 27638122..27638186 | 173..237 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:43:13 has no hits.
BS05469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:20 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:11 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:10 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1271 | 8..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:17 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1271 | 8..609 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:17 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433920..7434515 | 8..609 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:10 Download gff for
BS05469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427020..7427615 | 8..609 | 98 | | Minus |
BS05469.3prime Sequence
609 bp (608 high quality bases) assembled on 2005-12-02
> BS05469.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGGCGCACTTGTGCCGCTTGGGTCCT
CGAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTT
CAGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTA
TTTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTC
TTGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTT
GGTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGG
GAAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAG
AAACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCG
ATCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCT
TGGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATG
TACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTT
TCCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGA
CTGATAACT
BS05469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..579 | 595..17 | 2845 | 99.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 25..206 | 571..390 | 535 | 91.7 | Minus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 145..78 | 215 | 92.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 370..291 | 175 | 88.7 | Minus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 427..363 | 175 | 90.7 | Minus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 427..363 | 175 | 90.7 | Minus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 430..375 | 155 | 91 | Minus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 430..375 | 155 | 91 | Minus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 430..375 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1266 | 596..10 | 2875 | 99.3 | Minus |
Rac2-RA | 1299 | CG8556-RA | 680..1266 | 596..10 | 2875 | 99.3 | Minus |
Rac1-RB | 1805 | CG2248-RB | 337..919 | 596..14 | 1585 | 85.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433925..7434511 | 10..596 | 2875 | 99.3 | Plus |
3L | 28110227 | 3L | 1301829..1302347 | 78..596 | 1575 | 86.9 | Plus |
X | 23542271 | X | 19697956..19698190 | 597..363 | 485 | 80.4 | Minus |
3R | 32079331 | 3R | 27638122..27638186 | 439..375 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:56:32 has no hits.
BS05469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:19 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-PA | 1..579 | 17..595 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:09 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..579 | 17..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:40 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1271 | 3..604 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:20:41 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1271 | 3..604 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:20:41 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433920..7434515 | 3..604 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:40 Download gff for
BS05469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427020..7427615 | 3..604 | 98 | | Plus |
BS05469.complete Sequence
611 bp (611 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635129
> BS05469.complete
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACCAT
BS05469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 579 | CG8556-PB | 1..579 | 17..595 | 2865 | 99.7 | Plus |
Rac2-RA | 579 | CG8556-PA | 1..579 | 17..595 | 2865 | 99.7 | Plus |
Rac1-RB | 579 | CG2248-PB | 1..518 | 17..534 | 1570 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1266 | 16..602 | 2875 | 99.3 | Plus |
Rac2-RA | 1299 | CG8556-RA | 680..1266 | 16..602 | 2875 | 99.3 | Plus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 16..534 | 1575 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433925..7434511 | 602..16 | 2875 | 99.3 | Minus |
3L | 28110227 | 3L | 1301829..1302347 | 534..16 | 1575 | 86.9 | Minus |
X | 23542271 | X | 19697956..19698190 | 15..249 | 485 | 80.4 | Plus |
3R | 32079331 | 3R | 27638122..27638186 | 173..237 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:11:18 has no hits.
BS05469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:11 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 1..579 | 17..595 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:08 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 665..1260 | 8..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:44 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 681..1257 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:11 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 665..1260 | 8..609 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:56 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 681..1257 | 17..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:56 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433934..7434510 | 17..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:44 Download gff for
BS05469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427034..7427610 | 17..593 | 99 | | Minus |
BS05469.pep Sequence
Translation from 16 to 594
> BS05469.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPE
VRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIA
AVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALL*
BS05469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-PB | 192 | CG8556-PB | 1..192 | 1..192 | 1012 | 100 | Plus |
Rac2-PA | 192 | CG8556-PA | 1..192 | 1..192 | 1012 | 100 | Plus |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..192 | 949 | 93.2 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..192 | 949 | 93.2 | Plus |
Mtl-PC | 195 | CG5588-PC | 7..195 | 4..192 | 707 | 66.1 | Plus |