Clone BS05469 Report

Search the DGRC for BS05469

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRac2-RA
Protein status:BS05469.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05469.5prime Sequence

609 bp (608 high quality bases) assembled on 2005-12-02

> BS05469.5prime
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACC

BS05469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..579 17..595 2845 99.6 Plus
CG2248-PA 579 Rac1-RA 25..206 41..222 535 91.7 Plus
CG2248-PA 579 Rac1-RA 451..518 467..534 215 92.6 Plus
CG2248-PA 579 Rac1-RA 226..305 242..321 175 88.7 Plus
CG12530-PA 576 Cdc42-RA 169..233 185..249 175 90.7 Plus
CG12530-PB 576 Cdc42-RB 169..233 185..249 175 90.7 Plus
CG5588-PB 588 Mtl-RB 175..230 182..237 155 91 Plus
CG5588-PA 588 Mtl-RA 175..230 182..237 155 91 Plus
CG5588-PC 588 Mtl-RC 175..230 182..237 155 91 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1266 16..602 2875 99.3 Plus
Rac2-RA 1299 CG8556-RA 680..1266 16..602 2875 99.3 Plus
Rac1-RB 1805 CG2248-RB 337..919 16..598 1585 85.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433925..7434511 602..16 2875 99.3 Minus
3L 28110227 3L 1301829..1302347 534..16 1575 86.9 Minus
X 23542271 X 19697956..19698190 15..249 485 80.4 Plus
3R 32079331 3R 27638122..27638186 173..237 220 89.2 Plus
Blast to na_te.dros performed on 2015-02-13 01:43:13 has no hits.

BS05469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:20 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-PA 1..579 17..595 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:11 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..579 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:36:10 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1271 8..609 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:17 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1271 8..609 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:17 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433920..7434515 8..609 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:36:10 Download gff for BS05469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427020..7427615 8..609 98   Minus

BS05469.3prime Sequence

609 bp (608 high quality bases) assembled on 2005-12-02

> BS05469.3prime
ATGGTCTAGAAAGCTTTTAGAGCAGGGCGCACTTGTGCCGCTTGGGTCCT
CGAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTT
CAGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTA
TTTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTC
TTGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTT
GGTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGG
GAAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAG
AAACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCG
ATCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCT
TGGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATG
TACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTT
TCCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGA
CTGATAACT

BS05469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..579 595..17 2845 99.6 Minus
CG2248-PA 579 Rac1-RA 25..206 571..390 535 91.7 Minus
CG2248-PA 579 Rac1-RA 451..518 145..78 215 92.6 Minus
CG2248-PA 579 Rac1-RA 226..305 370..291 175 88.7 Minus
CG12530-PA 576 Cdc42-RA 169..233 427..363 175 90.7 Minus
CG12530-PB 576 Cdc42-RB 169..233 427..363 175 90.7 Minus
CG5588-PB 588 Mtl-RB 175..230 430..375 155 91 Minus
CG5588-PA 588 Mtl-RA 175..230 430..375 155 91 Minus
CG5588-PC 588 Mtl-RC 175..230 430..375 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1266 596..10 2875 99.3 Minus
Rac2-RA 1299 CG8556-RA 680..1266 596..10 2875 99.3 Minus
Rac1-RB 1805 CG2248-RB 337..919 596..14 1585 85.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433925..7434511 10..596 2875 99.3 Plus
3L 28110227 3L 1301829..1302347 78..596 1575 86.9 Plus
X 23542271 X 19697956..19698190 597..363 485 80.4 Minus
3R 32079331 3R 27638122..27638186 439..375 220 89.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:56:32 has no hits.

BS05469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:19 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-PA 1..579 17..595 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:09 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..579 17..595 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:34:40 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1271 3..604 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:20:41 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1271 3..604 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:20:41 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433920..7434515 3..604 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:34:40 Download gff for BS05469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427020..7427615 3..604 98   Plus

BS05469.complete Sequence

611 bp (611 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635129

> BS05469.complete
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCTAAAAGCT
TTCTAGACCAT

BS05469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 579 CG8556-PB 1..579 17..595 2865 99.7 Plus
Rac2-RA 579 CG8556-PA 1..579 17..595 2865 99.7 Plus
Rac1-RB 579 CG2248-PB 1..518 17..534 1570 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1266 16..602 2875 99.3 Plus
Rac2-RA 1299 CG8556-RA 680..1266 16..602 2875 99.3 Plus
Rac1-RB 1805 CG2248-RB 337..855 16..534 1575 86.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433925..7434511 602..16 2875 99.3 Minus
3L 28110227 3L 1301829..1302347 534..16 1575 86.9 Minus
X 23542271 X 19697956..19698190 15..249 485 80.4 Plus
3R 32079331 3R 27638122..27638186 173..237 220 89.2 Plus
Blast to na_te.dros performed on 2014-11-27 15:11:18 has no hits.

BS05469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:11 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 1..579 17..595 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:08 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 665..1260 8..609 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:44 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 681..1257 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:11 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 665..1260 8..609 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:56 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 681..1257 17..593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:56 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7433934..7434510 17..593 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:44 Download gff for BS05469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427034..7427610 17..593 99   Minus

BS05469.pep Sequence

Translation from 16 to 594

> BS05469.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPE
VRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIA
AVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALL*

BS05469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-PB 192 CG8556-PB 1..192 1..192 1012 100 Plus
Rac2-PA 192 CG8556-PA 1..192 1..192 1012 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..192 949 93.2 Plus
Rac1-PA 192 CG2248-PA 1..192 1..192 949 93.2 Plus
Mtl-PC 195 CG5588-PC 7..195 4..192 707 66.1 Plus