Clone Sequence Records
BS05470.3prime Sequence
887 bp (804 high quality bases) assembled on 2005-12-02
> BS05470.3prime
ATGGTCTAGAAAGCTTCTAGTCCACCATCTCCATTTGCGTCTCCTCGGAT
TCCCGCCAAATGCGCTGCACCATCTCTACCAGCTGCTTCCAGAGCGCCGT
CTTACGCAGGAAGTTGGCAAGGCAGACGAGAATAAAGGCCCAAGCCAGGC
CCAAATAGTAATCCGTCTGCACAATGGGTTTATTAGACAGCGGCTCCATC
TCTGCGCGAGTGAGGATGATCGGATCAATGGCCTGCGGATTCACAGTCTT
CATATTGGTGTGACTCATTATGAAACTGGCAAAGCTGCTCTTTGTGTCCT
TCCACCCGGGCTCGAATTTGATTAGCGGCCTGCCCTGGTGGAATAGCATC
AGTGTGGGCAGCGAAACGATGCCGAATTCTGCATTGAAACGACCAAACTC
ATAGGCATCCACATAGGCGATGGGTAGCGTGGGAAAGTAATGGGGCAGCA
CGTTGACCATCGAAGCCACACGAGCGCACTCCAAGCTGGATGCGGTGCAG
AAATGGACAAGCACACAGTTGCCCGGCTCGTGGCGCTTGGTGGCATTGCC
CATGGGCTTAAGCAGATTCACTATATCCTTGGCACTGCGCATTATCAGCA
GTTCCGGCTCGGATGCTGTCTCATTCTCGATATCCCGCTGCAGGCACTTC
ATCATAATAGGTGGCTTTCGAACCGGAGGCAGCTGGTTTAGGTGCATGAT
GTGCTCGTCATCCGGGGCACATGTGTGTCGCTCCTTCAGCAAGGTTTCGA
AGCTATAATGGCACTGGCCCCGCGAAACTCCCAGGGAATACACCGTCAAA
TTTGAGAAGAGCCCGAAATACTGGAGGGCACTTAGTAATCCGGAGAGTTC
CGCCTGGCCCTGCGCGGCGCAGAGCAAAATACAAACA
BS05470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 888 | CG8297-RA | 26..888 | 879..17 | 4290 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 88..959 | 887..17 | 4320 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935840 | 876..17 | 4285 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-03 13:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 161..230 | 109 | 63.4 | Plus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 161..230 | 109 | 63.4 | Plus |
BS05470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:21 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 18..888 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:13 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 18..888 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:22 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 89..965 | 11..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:43 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 89..965 | 11..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:43 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934981..15935846 | 11..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:22 Download gff for
BS05470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822486..11823351 | 11..876 | 99 | | Minus |
BS05470.5prime Sequence
874 bp (776 high quality bases) assembled on 2005-12-02
> BS05470.5prime
GAAGTTATCAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCT
GCGCCGCGCAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAG
TATTTCGGGCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCG
GGGCCAGTGCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACAT
GTGCCCCGGATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTT
CGAAAGCCACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGA
GACAGCATCCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAG
TGAATCTGCTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGC
AACTGTGTGCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCG
TGTGGCTTCGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCA
TCGCCTATGTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGC
ATCGTTTCGCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAAT
CAAATTCGAGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCA
TAATGAGTCACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCG
ATCATCCTCACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGT
GCAGACGGATTACTATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCC
TTGCCAACTTCCTGCGTAAGACGGCGCTCTGGAAGCAGCTGGTAGAGATG
GTGCAGCGCATTTGGCGGGATCCG
BS05470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 888 | CG8297-RA | 1..854 | 17..870 | 4245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 72..925 | 17..870 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935806 | 45..870 | 4115 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 10:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 760..691 | 109 | 63.4 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 760..691 | 109 | 63.4 | Minus |
BS05470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:22 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:14 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:22 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..930 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:30:33 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..930 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:30:33 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934896..15934923 | 17..44 | 100 | -> | Plus |
| 2R | 15934981..15935811 | 45..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:22 Download gff for
BS05470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822401..11822428 | 17..44 | 100 | -> | Plus |
| arm_2R | 11822486..11823316 | 45..874 | 99 | | Plus |
BS05470.complete Sequence
920 bp (920 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635130
> BS05470.complete
GAAGTTATCAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCT
GCGCCGCGCAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAG
TATTTCGGGCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCG
GGGCCAGTGCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACAT
GTGCCCCGGATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTT
CGAAAGCCACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGA
GACAGCATCCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAG
TGAATCTGCTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGC
AACTGTGTGCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCG
TGTGGCTTCGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCA
TCGCCTATGTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGC
ATCGTTTCGCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAAT
CAAATTCGAGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCA
TAATGAGTCACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCG
ATCATCCTCACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGT
GCAGACGGATTACTATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCC
TTGCCAACTTCCTGCGTAAGACGGCGCTCTGGAAGCAGCTGGTAGAGATG
GTGCAGCGCATTTGGCGGGAATCCGAGGAGACGCAAATGGAGATGGTGGA
CTAGAAGCTTTCTAGACCAT
BS05470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 888 | CG8297-PA | 1..888 | 17..904 | 4425 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 72..959 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935840 | 45..904 | 4285 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 10:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 760..691 | 109 | 63.4 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 760..691 | 109 | 63.4 | Minus |
BS05470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:12 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:09 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 9..902 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:31 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..959 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:12 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 9..902 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:39 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..959 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:39 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934896..15934923 | 17..44 | 100 | -> | Plus |
| 2R | 15934981..15935840 | 45..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:31 Download gff for
BS05470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822401..11822428 | 17..44 | 100 | -> | Plus |
| arm_2R | 11822486..11823345 | 45..904 | 99 | | Plus |
BS05470.pep Sequence
Translation from 16 to 903
> BS05470.pep
MNQNLLFVFLLCAAQGQAELSGLLSALQYFGLFSNLTVYSLGVSRGQCHY
SFETLLKERHTCAPDDEHIMHLNQLPPVRKPPIMMKCLQRDIENETASEP
ELLIMRSAKDIVNLLKPMGNATKRHEPGNCVLVHFCTASSLECARVASMV
NVLPHYFPTLPIAYVDAYEFGRFNAEFGIVSLPTLMLFHQGRPLIKFEPG
WKDTKSSFASFIMSHTNMKTVNPQAIDPIILTRAEMEPLSNKPIVQTDYY
LGLAWAFILVCLANFLRKTALWKQLVEMVQRIWRESEETQMEMVD*
BS05470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 295 | CG8297-PA | 1..295 | 1..295 | 1552 | 100 | Plus |
