Clone BS05471 Report

Search the DGRC for BS05471

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptRpL13A-RB
Protein status:BS05471.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05471.5prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-02

> BS05471.5prime
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGCTGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTTAAAAGCTTTCTAGACC

BS05471.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1475-PB 618 RpL13A-RB 1..618 17..634 3065 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..644 17..634 3075 99.8 Plus
RpL13A-RC 903 CG1475-RC 468..825 277..634 1775 99.7 Plus
RpL13A-RC 903 CG1475-RC 27..289 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625869 277..634 1775 99.7 Plus
3R 32079331 3R 5624889..5625131 37..279 1215 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:54:08 has no hits.

BS05471.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:25 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..634 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:16 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:27 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..644 8..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:59 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..644 8..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:59 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5625514..5625869 279..634 99   Plus
3R 5624890..5625130 38..278 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:27 Download gff for BS05471.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450612..1450852 38..278 100 -> Plus
arm_3R 1451236..1451591 279..634 99   Plus

BS05471.3prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-02

> BS05471.3prime
ATGGTCTAGAAAGCTTTTAAACCTCGTAGCCGTAGGATTTGATGATTTTG
TTGAAGGGCTCGGCGGCCTTCGCGATGTTCTCGCGCGCCTTGACCGTCAG
CTTCTTCAGCTCGCGGTTGTGCTTGAGGGTGACACGGAGCTTGGCCTTGC
GCTTGCGCTCCAGGCTCTTGATCACGTCCTGGTAGTGCCAGCCGACCTCG
TGCGACAGGCGACCCACCTGGCAGTACTTGCGGTCGGAGCGCAGGGTCAG
CACACGCATAGCGATGGGCACGACGACGCGGCGACGCTTGTCGTAGGGCG
ATGGGATGCCGTCGAACACACGCAGACGGGCGAGGGCGGCCTGGCCACGC
TTGGTCTTGTGTGGGATCATGCCTCGGACTGCCTTGTAGAAGATGCGAGA
GGGGGCACGGAAGTGGAATGGACCACGGGCTGGGTTCACGTTGCACCGCT
TGCGCAGGTAGGCCAGGAACTTGATCTTGTTCCTGTAGAAGTGTCCCGAG
AGGTTCAGCTCCTCGCAGCGGACCACGGCCACCTTGCCGCCCTGCAACAG
GTACTTGGCCACCACGGAGGCCAGGCGACCGAGCAAATGGCCGCGACCAT
CAATAACAACGGTCCTGTTCGTTAAACCAGTCATGTCGACTGATAACT

BS05471.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1475-PB 618 RpL13A-RB 1..618 634..17 3065 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..644 634..17 3075 99.8 Minus
RpL13A-RC 903 CG1475-RC 468..825 374..17 1775 99.7 Minus
RpL13A-RC 903 CG1475-RC 27..289 634..372 1315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625869 374..17 1775 99.7 Minus
3R 32079331 3R 5624889..5625131 614..372 1215 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:24:31 has no hits.

BS05471.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:24 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..634 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:15 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..634 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:08 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..644 17..643 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:38 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..644 17..643 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:38 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5624890..5625130 373..613 100 -> Minus
3R 5625514..5625869 17..372 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:08 Download gff for BS05471.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450612..1450852 373..613 100 -> Minus
arm_3R 1451236..1451591 17..372 99   Minus

BS05471.complete Sequence

650 bp (650 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635131

> BS05471.complete
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGCTGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTTAAAAGCTTTCTAGACCAT

BS05471.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 618 CG1475-PB 1..618 17..634 3075 99.8 Plus
RpL13A-RC 306 CG1475-PC 1..263 17..279 1315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..644 17..634 3075 99.8 Plus
RpL13A-RC 903 CG1475-RC 468..825 277..634 1775 99.7 Plus
RpL13A-RC 903 CG1475-RC 27..289 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625869 277..634 1775 99.7 Plus
3R 32079331 3R 5624889..5625131 37..279 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:23:00 has no hits.

BS05471.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:13 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:11 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 29..654 8..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:05 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 27..642 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:13 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 29..654 8..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:16 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 27..642 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:16 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5624890..5625130 38..278 100 -> Plus
3R 5624500..5624520 17..37 100 -> Plus
3R 5625514..5625867 279..632 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:05 Download gff for BS05471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450222..1450242 17..37 100 -> Plus
arm_3R 1450612..1450852 38..278 100 -> Plus
arm_3R 1451236..1451589 279..632 99   Plus

BS05471.pep Sequence

Translation from 16 to 633

> BS05471.pep
MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFY
RNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAA
LARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH
YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKS
YGYEV*

BS05471.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-PB 205 CG1475-PB 1..205 1..205 1058 100 Plus
RpL13A-PC 101 CG1475-PC 1..88 1..88 459 100 Plus