Clone Sequence Records
BS05471.5prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-02
> BS05471.5prime
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGCTGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTTAAAAGCTTTCTAGACC
BS05471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1475-PB | 618 | RpL13A-RB | 1..618 | 17..634 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..644 | 17..634 | 3075 | 99.8 | Plus |
RpL13A-RC | 903 | CG1475-RC | 468..825 | 277..634 | 1775 | 99.7 | Plus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625869 | 277..634 | 1775 | 99.7 | Plus |
3R | 32079331 | 3R | 5624889..5625131 | 37..279 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:54:08 has no hits.
BS05471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:25 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:16 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:27 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..644 | 8..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:59 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..644 | 8..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:59 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5625514..5625869 | 279..634 | 99 | | Plus |
3R | 5624890..5625130 | 38..278 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:27 Download gff for
BS05471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450612..1450852 | 38..278 | 100 | -> | Plus |
arm_3R | 1451236..1451591 | 279..634 | 99 | | Plus |
BS05471.3prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-02
> BS05471.3prime
ATGGTCTAGAAAGCTTTTAAACCTCGTAGCCGTAGGATTTGATGATTTTG
TTGAAGGGCTCGGCGGCCTTCGCGATGTTCTCGCGCGCCTTGACCGTCAG
CTTCTTCAGCTCGCGGTTGTGCTTGAGGGTGACACGGAGCTTGGCCTTGC
GCTTGCGCTCCAGGCTCTTGATCACGTCCTGGTAGTGCCAGCCGACCTCG
TGCGACAGGCGACCCACCTGGCAGTACTTGCGGTCGGAGCGCAGGGTCAG
CACACGCATAGCGATGGGCACGACGACGCGGCGACGCTTGTCGTAGGGCG
ATGGGATGCCGTCGAACACACGCAGACGGGCGAGGGCGGCCTGGCCACGC
TTGGTCTTGTGTGGGATCATGCCTCGGACTGCCTTGTAGAAGATGCGAGA
GGGGGCACGGAAGTGGAATGGACCACGGGCTGGGTTCACGTTGCACCGCT
TGCGCAGGTAGGCCAGGAACTTGATCTTGTTCCTGTAGAAGTGTCCCGAG
AGGTTCAGCTCCTCGCAGCGGACCACGGCCACCTTGCCGCCCTGCAACAG
GTACTTGGCCACCACGGAGGCCAGGCGACCGAGCAAATGGCCGCGACCAT
CAATAACAACGGTCCTGTTCGTTAAACCAGTCATGTCGACTGATAACT
BS05471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1475-PB | 618 | RpL13A-RB | 1..618 | 634..17 | 3065 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..644 | 634..17 | 3075 | 99.8 | Minus |
RpL13A-RC | 903 | CG1475-RC | 468..825 | 374..17 | 1775 | 99.7 | Minus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 634..372 | 1315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625869 | 374..17 | 1775 | 99.7 | Minus |
3R | 32079331 | 3R | 5624889..5625131 | 614..372 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:31 has no hits.
BS05471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:24 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:15 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:08 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..644 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:38 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..644 | 17..643 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:38 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5624890..5625130 | 373..613 | 100 | -> | Minus |
3R | 5625514..5625869 | 17..372 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:08 Download gff for
BS05471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450612..1450852 | 373..613 | 100 | -> | Minus |
arm_3R | 1451236..1451591 | 17..372 | 99 | | Minus |
BS05471.complete Sequence
650 bp (650 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635131
> BS05471.complete
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGCTGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTTAAAAGCTTTCTAGACCAT
BS05471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 618 | CG1475-PB | 1..618 | 17..634 | 3075 | 99.8 | Plus |
RpL13A-RC | 306 | CG1475-PC | 1..263 | 17..279 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..644 | 17..634 | 3075 | 99.8 | Plus |
RpL13A-RC | 903 | CG1475-RC | 468..825 | 277..634 | 1775 | 99.7 | Plus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625869 | 277..634 | 1775 | 99.7 | Plus |
3R | 32079331 | 3R | 5624889..5625131 | 37..279 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:23:00 has no hits.
BS05471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:13 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:11 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 29..654 | 8..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:05 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 27..642 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:13 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 29..654 | 8..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:16 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 27..642 | 17..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:16 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5624890..5625130 | 38..278 | 100 | -> | Plus |
3R | 5624500..5624520 | 17..37 | 100 | -> | Plus |
3R | 5625514..5625867 | 279..632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:05 Download gff for
BS05471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450222..1450242 | 17..37 | 100 | -> | Plus |
arm_3R | 1450612..1450852 | 38..278 | 100 | -> | Plus |
arm_3R | 1451236..1451589 | 279..632 | 99 | | Plus |
BS05471.pep Sequence
Translation from 16 to 633
> BS05471.pep
MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFY
RNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAA
LARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH
YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKS
YGYEV*
BS05471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-PB | 205 | CG1475-PB | 1..205 | 1..205 | 1058 | 100 | Plus |
RpL13A-PC | 101 | CG1475-PC | 1..88 | 1..88 | 459 | 100 | Plus |