Clone Sequence Records
BS05472.5prime Sequence
726 bp (725 high quality bases) assembled on 2005-11-29
> BS05472.5prime
GAAGTTATCAGTCGACATGCCGCAGAATGAGTATATGGAACGCCATCGCA
AGCTGTATGGCCGGCGATTGGATTACGAGGAACGGAAACGCAAGAAGGAA
GCGCGTCTTCCCAAAGACCGAGCACGAAAGGCTCGCAAGTTGCGCGGCAT
CAAGGCCAAACTCTTTAATAAGGAGCGACGCAATGAAAAGATTCAGATTA
AGAAGAAGATCCAGGCCCACGAAGAGAAGAAGGTCAAAAAGCAGGAGGAG
AAGGTCGAGGATGGAGCCCTGCCGCATTATCTGCTCGACAGAGGCATCCA
GTCCAGCGCCAAGGTCCTGTCCAATATGATCAAGCAGAAGCGCAAGGAGA
AGGCAGGCAAGTGGGACGTGCCCATTCCCAAAGTACGCGCTCAGTCAGAT
GCTGAGGTCTTCAAAGTACTAAAGACCGGAAAGACAAAGCGAAAGGCATG
GAAGCGCATGGTCACAAAAGTCACATTCGTTGGCGAGAACTTCACACGCA
AGCCACCAAAGTTTGAGCGTTTCATTCGACCGATGGGTCTGCGCATGAAA
AAGGCTCACGTTACGCATCCAGAGCTTAAAGCCACCTTCAATCTGCCCAT
CATTGGCGTCAAGAAGAACCCCAGCTCGCCCATGTTCACTTCCTTGGGTG
TAATTACAAAGGGTACTGTGATCGAAGTCAACATCTCTGAGCTGGGTTTG
GTAACGCAAACGGGAAAAGTTGTCTG
BS05472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5277-PA | 780 | Ip259-RA | 1..710 | 17..726 | 3350 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1008 | 17..726 | 3430 | 98.9 | Plus |
| Ip259-RA | 907 | CG5277-RA | 64..773 | 17..726 | 3430 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409476 | 17..726 | 3430 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:14:39 has no hits.
BS05472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:27 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-PA | 1..710 | 17..726 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:19 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5277-PA | 1..710 | 17..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:02 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..773 | 9..726 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:22 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..773 | 9..726 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:22 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408758..10409476 | 9..726 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:02 Download gff for
BS05472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408758..10409476 | 9..726 | 98 | | Plus |
BS05472.3prime Sequence
810 bp (809 high quality bases) assembled on 2005-12-02
> BS05472.3prime
ATGGTCTAGAAAGCTTTTAGACAAGCAGCACTGCATTGATAACACCATCG
TTTTCTGGATTGTTCGTGACCTGAGCGTATTTGCCCCAGACAACTTTTCC
CGTTTGCGTTACCAAACCCAGCTCAGAGATGTTGACTTCGATCACAGTAC
CCTTTGTAATTACACCCAAGGAAGTGAACATGGGCGAGCTGGGGTTCTTC
TTGACGCCAATGATGGGCAGATTGAAGGTGGCTTTAAGCTCTGGATGCGT
AACGTGAGCCTTTTTCATGCGCAGACCCATCGGTCGAATGAAACGCTCAA
ACTTTGGTGGCTTGCGTGTGAAGTTCTCGCCAACGAATGTGACTTTTGTG
ACCATGCGCTTCCATGCCTTTCGCTTTGTCTTTCCGGTCTTTAGTACTTT
GAAGACCTCAGCATCTGACTGAGCGCGTACTTTGGGAATGGGCACGTCCC
ACTTGCCTGCCTTCTCCTTGCGCTTCTGCTTGATCATATTGGACAGGACC
TTGGCGCTGGACTGGATGCCTCTGTCGAGCAGATAATGCGGCAGGGCTCC
ATCCTCGACCTTCTCCTCCTGCTTTTTGACCTTCTTCTCTTCGTGGGCCT
GGATCTTCTTCTTAATCTGAATCTTTTCATTGCGTCGCTCCTTATTAAAG
AGTTTGGCCTTGATGCCGCGCAACTTGCGAGCCTTTCGTGCTCGGTCTTT
GGGAAGACGCGCTTCCTTCTTGCGTTTCCGTTCCTCGTAATCCAATCGCC
GGCCATACAGCTTGCGATGGCGTTCCATATACTCATTCTGCGGCATGTCG
ACTGATAACT
BS05472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5277-PA | 780 | Ip259-RA | 1..780 | 796..17 | 3700 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1078 | 796..17 | 3780 | 99 | Minus |
| Ip259-RA | 907 | CG5277-RA | 64..843 | 796..17 | 3780 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409546 | 796..17 | 3780 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:28 has no hits.
BS05472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:26 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-PA | 1..780 | 17..796 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:17 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5277-PA | 1..780 | 17..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:07 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 17..804 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:30 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 17..804 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:30 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408758..10409546 | 17..804 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:07 Download gff for
BS05472.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408758..10409546 | 17..804 | 98 | | Minus |
BS05472.complete Sequence
812 bp (812 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635132
> BS05472.complete
GAAGTTATCAGTCGACATGCCGCAGAATGAGTATATGGAACGCCATCGCA
AGCTGTATGGCCGGCGATTGGATTACGAGGAACGGAAACGCAAGAAGGAA
GCGCGTCTTCCCAAAGACCGAGCACGAAAGGCTCGCAAGTTGCGCGGCAT
CAAGGCCAAACTCTTTAATAAGGAGCGACGCAATGAAAAGATTCAGATTA
AGAAGAAGATCCAGGCCCACGAAGAGAAGAAGGTCAAAAAGCAGGAGGAG
AAGGTCGAGGATGGAGCCCTGCCGCATTATCTGCTCGACAGAGGCATCCA
GTCCAGCGCCAAGGTCCTGTCCAATATGATCAAGCAGAAGCGCAAGGAGA
AGGCAGGCAAGTGGGACGTGCCCATTCCCAAAGTACGCGCTCAGTCAGAT
GCTGAGGTCTTCAAAGTACTAAAGACCGGAAAGACAAAGCGAAAGGCATG
GAAGCGCATGGTCACAAAAGTCACATTCGTTGGCGAGAACTTCACACGCA
AGCCACCAAAGTTTGAGCGTTTCATTCGACCGATGGGTCTGCGCATGAAA
AAGGCTCACGTTACGCATCCAGAGCTTAAAGCCACCTTCAATCTGCCCAT
CATTGGCGTCAAGAAGAACCCCAGCTCGCCCATGTTCACTTCCTTGGGTG
TAATTACAAAGGGTACTGTGATCGAAGTCAACATCTCTGAGCTGGGTTTG
GTAACGCAAACGGGAAAAGTTGTCTGGGGCAAATACGCTCAGGTCACGAA
CAATCCAGAAAACGATGGTGTTATCAATGCAGTGCTGCTTGTCTAAAAGC
TTTCTAGACCAT
BS05472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 780 | CG5277-PB | 1..780 | 17..796 | 3780 | 99 | Plus |
| Ip259-RA | 780 | CG5277-PA | 1..780 | 17..796 | 3780 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1078 | 17..796 | 3780 | 99 | Plus |
| Ip259-RA | 907 | CG5277-RA | 64..843 | 17..796 | 3780 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409546 | 17..796 | 3780 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:52 has no hits.
BS05472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:14 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 1..780 | 17..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:12 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 54..842 | 9..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:41 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 64..841 | 17..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:15 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 54..842 | 9..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:28 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 64..841 | 17..794 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:28 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408767..10409544 | 17..794 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:41 Download gff for
BS05472.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408767..10409544 | 17..794 | 98 | | Plus |
BS05472.pep Sequence
Translation from 16 to 795
> BS05472.pep
MPQNEYMERHRKLYGRRLDYEERKRKKEARLPKDRARKARKLRGIKAKLF
NKERRNEKIQIKKKIQAHEEKKVKKQEEKVEDGALPHYLLDRGIQSSAKV
LSNMIKQKRKEKAGKWDVPIPKVRAQSDAEVFKVLKTGKTKRKAWKRMVT
KVTFVGENFTRKPPKFERFIRPMGLRMKKAHVTHPELKATFNLPIIGVKK
NPSSPMFTSLGVITKGTVIEVNISELGLVTQTGKVVWGKYAQVTNNPEND
GVINAVLLV*
BS05472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-PB | 259 | CG5277-PB | 1..259 | 1..259 | 1329 | 100 | Plus |
| Ip259-PA | 259 | CG5277-PA | 1..259 | 1..259 | 1329 | 100 | Plus |
