Clone BS05475 Report

Search the DGRC for BS05475

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptPex10-RA
Protein status:BS05475.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05475.3prime Sequence

934 bp (715 high quality bases) assembled on 2005-12-02

> BS05475.3prime
ATGGTCTAGAAAGCTTTTAGGCATAGTTTTGCAGTAATATCACTTGGGAC
TTTTTCAGCGACTCCCGGCACAAGGGGCACTCATCCCGCTCCTCCAGCCA
CTCGAGCAGGCAGCTCCAGCAAAAGATGTGGCCGCATGGAGTCAAACTGC
TGTCAGAACGTGGCTCCAGGCAAAGGATGCACTGTGGGGTGTTTGGATCT
ACGTCCTTTGTACTCGAAGATCTTTGCAGGAAATTCTTTCCAGCCTGCTT
TATTGATTCTAGCTGCTGGCGCTTGTGCTCTCTCCAGGCATCCCATCCAC
TAATGGCCAAGGAAACGCTGACCTGCAGGAAAGTGATTACGCCCAGTATC
TTGTAGCCGTACAGCGAGAATTCCGGCTGCAGCCAGTGACGGATTAGTAC
GTAGTTGATGCCCGTGGTGCGCTTGGACAGCTGGTACTTGCTGGCGTCCA
AGTAGAATAGAGACTTGTGCAGGGCCTTTACGTAGCTGGGAGATTGCCTG
AGCCTCTGAATAATCTTCTTTAGCTGCGGCTTGATCTCGGTTCGAATCTC
GTCATTGTTGGCCACGTAGGTGTCAAGTTTTTGCATCAATCGTTGGAACA
GGGAGTCGCCACCAAACTCCAGGACAATGGCAATCAGTTGTAACAATCTG
CTGGGAATCTGCTTATAGTTCCCGTCCACCTGTATTATCCCCGTGTACTC
TTCGCCGAGGGTCTGAAGGTTATTGGCCGAGGCGAATCCGTGGTAACTGA
GCTCCGCCAGAAGTCGGCACATCTGGTTGTACTTTATCCAGTTCCGTGGA
CCGGTGAGGCGCAAGACATCGGACAAGTCTTCGGCCAGCTCGTTGGTGTA
CCGTGCATCCTTCTGCACGGATCTCACGATCTCCGGCTGCCGGGGCACGG
CGTTTCGAAAGTCCATGTCGACTGATAACTTCGT

BS05475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7864-PA 900 CG7864-RA 23..900 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 1028 CG7864-RB 47..950 920..17 4445 99.6 Minus
Pex10-RA 1487 CG7864-RA 506..1409 920..17 4445 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1559158..1559785 644..17 3140 100 Minus
3L 28110227 3L 1558828..1559104 920..644 1310 98.2 Minus
Blast to na_te.dros performed on 2015-02-11 22:51:33 has no hits.

BS05475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:31 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 1..900 17..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:27 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 1..900 17..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:43 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..1413 11..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:38 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..1413 11..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:38 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1558825..1559104 644..924 97 -> Minus
3L 1559159..1559789 11..643 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:43 Download gff for BS05475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1558825..1559104 644..924 97 -> Minus
arm_3L 1559159..1559789 11..643 99   Minus

BS05475.5prime Sequence

876 bp (733 high quality bases) assembled on 2005-12-02

> BS05475.5prime
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCT

BS05475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7864-PA 900 CG7864-RA 1..860 17..876 4275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 1028 CG7864-RB 47..910 13..876 4305 99.9 Plus
Pex10-RA 1487 CG7864-RA 506..1369 13..876 4305 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1559158..1559745 289..876 2940 100 Plus
3L 28110227 3L 1558828..1559104 13..289 1370 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 01:12:29 has no hits.

BS05475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:32 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:28 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7864-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:34 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..1369 9..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:54 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 503..1369 9..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:54 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1558825..1559104 9..289 98 -> Plus
3L 1559159..1559745 290..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:34 Download gff for BS05475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1558825..1559104 9..289 98 -> Plus
arm_3L 1559159..1559745 290..876 100   Plus

BS05475.complete Sequence

932 bp (932 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635133

> BS05475.complete
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCTGAAAAAGTCCCAAGTGATATTACT
GCAAAACTATGCCTAAAAGCTTTCTAGACCAT

BS05475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 900 CG7864-PB 1..900 17..916 4485 99.9 Plus
Pex10-RA 900 CG7864-PA 1..900 17..916 4485 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-RB 1028 CG7864-RB 47..950 13..916 4505 99.9 Plus
Pex10-RA 1487 CG7864-RA 506..1409 13..916 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1559158..1559785 289..916 3140 100 Plus
3L 28110227 3L 1558828..1559104 13..289 1370 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:33 has no hits.

BS05475.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:16 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
CG7864-RA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:14 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
CG7864-RA 496..1406 9..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:16:45 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 510..1407 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:16 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
CG7864-RA 496..1406 9..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:37 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
Pex10-RA 510..1407 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:37 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1558832..1559104 17..289 99 -> Plus
3L 1559159..1559783 290..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:16:45 Download gff for BS05475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1558832..1559104 17..289 99 -> Plus
arm_3L 1559159..1559783 290..914 100   Plus

BS05475.pep Sequence

Translation from 16 to 915

> BS05475.pep
MDFRNARARQPEIVRSVQKDARYTNELAEDLSDVLRLTGPRNWIKYNQMC
RLLAELSYHGFASANNLQTLGEEYTGIIQVDGNYKQIPSRLLQLIAIVLE
FGGDSLFQRLMQKLDTYVANNDEIRTEIKPQLKKIIQRLRQSPSYVKALH
KSLFYLDASKYQLSKRTTGINYVLIRHWLQPEFSLYGYKILGVITFLQVS
VSLAISGWDAWREHKRQQLESIKQAGKNFLQRSSSTKDVDPNTPQCILCL
EPRSDSSLTPCGHIFCWSCLLEWLEERDECPLCRESLKKSQVILLQNYA*

BS05475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pex10-PB 299 CG7864-PB 1..299 1..299 1562 100 Plus
Pex10-PA 299 CG7864-PA 1..299 1..299 1562 100 Plus