Clone Sequence Records
BS05475.3prime Sequence
934 bp (715 high quality bases) assembled on 2005-12-02
> BS05475.3prime
ATGGTCTAGAAAGCTTTTAGGCATAGTTTTGCAGTAATATCACTTGGGAC
TTTTTCAGCGACTCCCGGCACAAGGGGCACTCATCCCGCTCCTCCAGCCA
CTCGAGCAGGCAGCTCCAGCAAAAGATGTGGCCGCATGGAGTCAAACTGC
TGTCAGAACGTGGCTCCAGGCAAAGGATGCACTGTGGGGTGTTTGGATCT
ACGTCCTTTGTACTCGAAGATCTTTGCAGGAAATTCTTTCCAGCCTGCTT
TATTGATTCTAGCTGCTGGCGCTTGTGCTCTCTCCAGGCATCCCATCCAC
TAATGGCCAAGGAAACGCTGACCTGCAGGAAAGTGATTACGCCCAGTATC
TTGTAGCCGTACAGCGAGAATTCCGGCTGCAGCCAGTGACGGATTAGTAC
GTAGTTGATGCCCGTGGTGCGCTTGGACAGCTGGTACTTGCTGGCGTCCA
AGTAGAATAGAGACTTGTGCAGGGCCTTTACGTAGCTGGGAGATTGCCTG
AGCCTCTGAATAATCTTCTTTAGCTGCGGCTTGATCTCGGTTCGAATCTC
GTCATTGTTGGCCACGTAGGTGTCAAGTTTTTGCATCAATCGTTGGAACA
GGGAGTCGCCACCAAACTCCAGGACAATGGCAATCAGTTGTAACAATCTG
CTGGGAATCTGCTTATAGTTCCCGTCCACCTGTATTATCCCCGTGTACTC
TTCGCCGAGGGTCTGAAGGTTATTGGCCGAGGCGAATCCGTGGTAACTGA
GCTCCGCCAGAAGTCGGCACATCTGGTTGTACTTTATCCAGTTCCGTGGA
CCGGTGAGGCGCAAGACATCGGACAAGTCTTCGGCCAGCTCGTTGGTGTA
CCGTGCATCCTTCTGCACGGATCTCACGATCTCCGGCTGCCGGGGCACGG
CGTTTCGAAAGTCCATGTCGACTGATAACTTCGT
BS05475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7864-PA | 900 | CG7864-RA | 23..900 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex10-RB | 1028 | CG7864-RB | 47..950 | 920..17 | 4445 | 99.6 | Minus |
Pex10-RA | 1487 | CG7864-RA | 506..1409 | 920..17 | 4445 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1559158..1559785 | 644..17 | 3140 | 100 | Minus |
3L | 28110227 | 3L | 1558828..1559104 | 920..644 | 1310 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:51:33 has no hits.
BS05475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:31 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-PA | 1..900 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:27 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-PA | 1..900 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:43 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 503..1413 | 11..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:38 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 503..1413 | 11..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:38 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1558825..1559104 | 644..924 | 97 | -> | Minus |
3L | 1559159..1559789 | 11..643 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:43 Download gff for
BS05475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1558825..1559104 | 644..924 | 97 | -> | Minus |
arm_3L | 1559159..1559789 | 11..643 | 99 | | Minus |
BS05475.5prime Sequence
876 bp (733 high quality bases) assembled on 2005-12-02
> BS05475.5prime
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCT
BS05475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7864-PA | 900 | CG7864-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex10-RB | 1028 | CG7864-RB | 47..910 | 13..876 | 4305 | 99.9 | Plus |
Pex10-RA | 1487 | CG7864-RA | 506..1369 | 13..876 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1559158..1559745 | 289..876 | 2940 | 100 | Plus |
3L | 28110227 | 3L | 1558828..1559104 | 13..289 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:12:29 has no hits.
BS05475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:32 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:28 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:56:34 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 503..1369 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:54 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 503..1369 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:54 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1558825..1559104 | 9..289 | 98 | -> | Plus |
3L | 1559159..1559745 | 290..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:56:34 Download gff for
BS05475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1558825..1559104 | 9..289 | 98 | -> | Plus |
arm_3L | 1559159..1559745 | 290..876 | 100 | | Plus |
BS05475.complete Sequence
932 bp (932 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635133
> BS05475.complete
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCTGAAAAAGTCCCAAGTGATATTACT
GCAAAACTATGCCTAAAAGCTTTCTAGACCAT
BS05475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex10-RB | 900 | CG7864-PB | 1..900 | 17..916 | 4485 | 99.9 | Plus |
Pex10-RA | 900 | CG7864-PA | 1..900 | 17..916 | 4485 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex10-RB | 1028 | CG7864-RB | 47..950 | 13..916 | 4505 | 99.9 | Plus |
Pex10-RA | 1487 | CG7864-RA | 506..1409 | 13..916 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1559158..1559785 | 289..916 | 3140 | 100 | Plus |
3L | 28110227 | 3L | 1558828..1559104 | 13..289 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:33 has no hits.
BS05475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:16 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-RA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:14 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-RA | 496..1406 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:16:45 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 510..1407 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:16 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7864-RA | 496..1406 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:37 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pex10-RA | 510..1407 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:37 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1558832..1559104 | 17..289 | 99 | -> | Plus |
3L | 1559159..1559783 | 290..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:16:45 Download gff for
BS05475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1558832..1559104 | 17..289 | 99 | -> | Plus |
arm_3L | 1559159..1559783 | 290..914 | 100 | | Plus |
BS05475.pep Sequence
Translation from 16 to 915
> BS05475.pep
MDFRNARARQPEIVRSVQKDARYTNELAEDLSDVLRLTGPRNWIKYNQMC
RLLAELSYHGFASANNLQTLGEEYTGIIQVDGNYKQIPSRLLQLIAIVLE
FGGDSLFQRLMQKLDTYVANNDEIRTEIKPQLKKIIQRLRQSPSYVKALH
KSLFYLDASKYQLSKRTTGINYVLIRHWLQPEFSLYGYKILGVITFLQVS
VSLAISGWDAWREHKRQQLESIKQAGKNFLQRSSSTKDVDPNTPQCILCL
EPRSDSSLTPCGHIFCWSCLLEWLEERDECPLCRESLKKSQVILLQNYA*
BS05475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pex10-PB | 299 | CG7864-PB | 1..299 | 1..299 | 1562 | 100 | Plus |
Pex10-PA | 299 | CG7864-PA | 1..299 | 1..299 | 1562 | 100 | Plus |