Clone BS05476 Report

Search the DGRC for BS05476

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG4769-RA
Protein status:BS05476.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05476.3prime Sequence

850 bp (762 high quality bases) assembled on 2005-12-02

> BS05476.3prime
ATGGTCTAGAAAGCTTCTACTTCTCCTTGGGCACGAACACAATCTTCCGC
GACTTGAGCGACGACCACTTGTGCCGCTTAATGTAATACGAGATGACGGT
CAGGAAGCCAAGGATGCCAATCACCTTGATCAGCAGCTGCTTGCGATCGT
CGTGCTCCGGCTCGGAAGTCCACTTCAGGAAAGTGGCCACGTCCTTGGCC
AGCTGGCTCTGCGTCGGCGGTGTGCCGTCCTCGTACTCGATGACCTCGTT
GTACAACACCTGGGCCATGGAAATGGCACCGCCCGGGAAGTACGGGTTGA
AGTACTGACCCTCGCGCAGCACCACTCCGGCAGGAGCATCATGGTAGCCC
GTGAGCAGCGAGAAGATGTAATCCTCTCCGCCCTTGCGGGCCGACACGAT
GTAGCTCAGATCCGGAGGATAAGCACCGTTGTTGGCAGCACGGGCCGCTT
CCTCGTTGGGATACGGCGATGGGAAGTAGTCCGACAGCTTGCCAGGACGA
GTGTAGTAGTTGCCGGTGTCATCGGGACCGTCCTTGACCGTGATCTGCTC
GGCTTCAGCCTTGGCCTCGGCTTCGGTGTGGGTGACACCAACCAGATTGC
GGTAGGCAATGTATTGCATCGAGTGGCAGGCGGAGCACACCTGCTTGTAC
ACCTCGTAGCCGCGACGAACGCTCTGGTGGTCCAAAGCGTCGAAGAGGCC
CTTGTGGTTCCAGAGTTGCGCGGGGGAGTGCACCTCGCCGCCAGATGCCT
GCACGGACTGCTCCAGGGCGTAGATAGGGGCGCCCACTCCGCCGGTGATT
TGCTCCCAGGCGCCGATCAGCTTCTTTGTGCCACTGGCCCAGCTGCCGGC

BS05476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PA 924 CG4769-RA 141..924 800..17 3770 99.2 Minus
CG4769-PA 924 CG4769-RA 91..133 850..808 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 220..1055 850..15 4015 98.8 Minus
CG4769-RA 1521 CG4769-RA 220..1055 850..15 4015 98.8 Minus
CG14508-RA 1293 CG14508-RA 454..924 713..243 675 76.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 539..243 1425 98.7 Minus
3L 28110227 3L 5362101..5362332 246..15 1160 100 Minus
3L 28110227 3L 5361491..5361627 673..537 670 99.3 Minus
3L 28110227 3L 5360875..5361025 822..672 665 96 Minus
3R 32079331 3R 29203044..29203499 258..713 660 76.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:47:45 has no hits.

BS05476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:34 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 91..924 17..850 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:29 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 91..924 17..850 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:49 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 220..1060 10..850 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:18 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 220..1060 10..850 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:18 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5361695..5361988 245..538 98 -> Minus
3L 5360710..5360739 821..850 93 -> Minus
3L 5360877..5361025 672..820 98 -> Minus
3L 5361493..5361625 539..671 99 -> Minus
3L 5362103..5362337 10..244 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:49 Download gff for BS05476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5353810..5353839 821..850 93 -> Minus
arm_3L 5353977..5354125 672..820 98 -> Minus
arm_3L 5354593..5354725 539..671 99 -> Minus
arm_3L 5354795..5355088 245..538 98 -> Minus
arm_3L 5355203..5355437 10..244 99   Minus

BS05476.5prime Sequence

880 bp (757 high quality bases) assembled on 2005-12-02

> BS05476.5prime
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAG

BS05476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PA 924 CG4769-RA 1..864 17..880 4170 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 129..993 16..880 4235 99.3 Plus
CG4769-RA 1521 CG4769-RA 129..993 16..880 4235 99.3 Plus
CG14508-RA 1293 CG14508-RA 454..924 244..714 675 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 418..714 1425 98.7 Plus
3L 28110227 3L 5362101..5362270 711..880 850 100 Plus
3L 28110227 3L 5360875..5361025 135..285 755 100 Plus
3L 28110227 3L 5361491..5361627 284..420 670 99.3 Plus
3R 32079331 3R 29203044..29203499 699..244 660 76.3 Minus
3L 28110227 3L 5360339..5360412 16..89 370 100 Plus
3L 28110227 3L 5360688..5360739 85..136 245 98.1 Plus
Blast to na_te.dros performed 2015-02-09 23:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4184..4248 139..208 114 65.7 Plus

BS05476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:35 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:31 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:49 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 120..993 8..880 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:13 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 120..993 8..880 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:13 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5361493..5361625 286..418 99 -> Plus
3L 5360877..5361025 137..285 100 -> Plus
3L 5360330..5360411 8..88 95 -> Plus
3L 5360692..5360739 89..136 97 -> Plus
3L 5361695..5361988 419..712 98 -> Plus
3L 5362103..5362270 713..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:49 Download gff for BS05476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5353430..5353511 8..88 95 -> Plus
arm_3L 5353792..5353839 89..136 97 -> Plus
arm_3L 5353977..5354125 137..285 100 -> Plus
arm_3L 5354593..5354725 286..418 99 -> Plus
arm_3L 5354795..5355088 419..712 98 -> Plus
arm_3L 5355203..5355370 713..880 100   Plus

BS05476.complete Sequence

956 bp (956 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635134

> BS05476.complete
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGCGGAAGATTGTGTTCGTGCCCAAGGAGAAGTAGAAGCTTTCTA
GACCAT

BS05476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 924 CG4769-PB 1..924 17..940 4530 99.4 Plus
CG4769-RA 924 CG4769-PA 1..924 17..940 4530 99.4 Plus
CG14508-RA 1035 CG14508-PA 237..692 244..699 660 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 129..1055 16..942 4545 99.4 Plus
CG4769-RA 1521 CG4769-RA 129..1055 16..942 4545 99.4 Plus
CG14508-RA 1293 CG14508-RA 454..909 244..699 660 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 418..714 1425 98.7 Plus
3L 28110227 3L 5362101..5362332 711..942 1160 100 Plus
3L 28110227 3L 5360875..5361025 135..285 755 100 Plus
3L 28110227 3L 5361491..5361627 284..420 670 99.3 Plus
3R 32079331 3R 29203044..29203499 699..244 660 76.3 Minus
3L 28110227 3L 5360339..5360412 16..89 370 100 Plus
3L 28110227 3L 5360688..5360739 85..136 245 98.1 Plus
Blast to na_te.dros performed 2014-11-27 20:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4184..4248 139..208 114 65.7 Plus

BS05476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:56 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:51 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 141..1081 8..947 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:10 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 130..1053 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:56 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 141..1081 8..947 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:10 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 130..1053 17..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:10 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5360877..5361025 137..285 100 -> Plus
3L 5361493..5361625 286..418 99 -> Plus
3L 5361695..5361988 419..712 98 -> Plus
3L 5362103..5362330 713..940 100   Plus
3L 5360340..5360411 17..88 100 -> Plus
3L 5360692..5360739 89..136 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:10 Download gff for BS05476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5353440..5353511 17..88 100 -> Plus
arm_3L 5353792..5353839 89..136 97 -> Plus
arm_3L 5353977..5354125 137..285 100 -> Plus
arm_3L 5354593..5354725 286..418 99 -> Plus
arm_3L 5354795..5355088 419..712 98 -> Plus
arm_3L 5355203..5355430 713..940 100   Plus

BS05476.pep Sequence

Translation from 16 to 939

> BS05476.pep
MAATLRRFHGLRLLKSAPALSLQQAKNLSSAGSWASGNKKLIGALGAITG
GVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQ
VCSACHSMQYIAYRNLVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPG
KLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGYH
DAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKD
VATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKI
VFVPKEK*

BS05476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PB 307 CG4769-PB 1..307 1..307 1605 100 Plus
CG4769-PA 307 CG4769-PA 1..307 1..307 1605 100 Plus
CG14508-PA 344 CG14508-PA 35..309 32..305 1010 70.5 Plus