Clone Sequence Records
BS05476.3prime Sequence
850 bp (762 high quality bases) assembled on 2005-12-02
> BS05476.3prime
ATGGTCTAGAAAGCTTCTACTTCTCCTTGGGCACGAACACAATCTTCCGC
GACTTGAGCGACGACCACTTGTGCCGCTTAATGTAATACGAGATGACGGT
CAGGAAGCCAAGGATGCCAATCACCTTGATCAGCAGCTGCTTGCGATCGT
CGTGCTCCGGCTCGGAAGTCCACTTCAGGAAAGTGGCCACGTCCTTGGCC
AGCTGGCTCTGCGTCGGCGGTGTGCCGTCCTCGTACTCGATGACCTCGTT
GTACAACACCTGGGCCATGGAAATGGCACCGCCCGGGAAGTACGGGTTGA
AGTACTGACCCTCGCGCAGCACCACTCCGGCAGGAGCATCATGGTAGCCC
GTGAGCAGCGAGAAGATGTAATCCTCTCCGCCCTTGCGGGCCGACACGAT
GTAGCTCAGATCCGGAGGATAAGCACCGTTGTTGGCAGCACGGGCCGCTT
CCTCGTTGGGATACGGCGATGGGAAGTAGTCCGACAGCTTGCCAGGACGA
GTGTAGTAGTTGCCGGTGTCATCGGGACCGTCCTTGACCGTGATCTGCTC
GGCTTCAGCCTTGGCCTCGGCTTCGGTGTGGGTGACACCAACCAGATTGC
GGTAGGCAATGTATTGCATCGAGTGGCAGGCGGAGCACACCTGCTTGTAC
ACCTCGTAGCCGCGACGAACGCTCTGGTGGTCCAAAGCGTCGAAGAGGCC
CTTGTGGTTCCAGAGTTGCGCGGGGGAGTGCACCTCGCCGCCAGATGCCT
GCACGGACTGCTCCAGGGCGTAGATAGGGGCGCCCACTCCGCCGGTGATT
TGCTCCCAGGCGCCGATCAGCTTCTTTGTGCCACTGGCCCAGCTGCCGGC
BS05476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PA | 924 | CG4769-RA | 141..924 | 800..17 | 3770 | 99.2 | Minus |
CG4769-PA | 924 | CG4769-RA | 91..133 | 850..808 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 220..1055 | 850..15 | 4015 | 98.8 | Minus |
CG4769-RA | 1521 | CG4769-RA | 220..1055 | 850..15 | 4015 | 98.8 | Minus |
CG14508-RA | 1293 | CG14508-RA | 454..924 | 713..243 | 675 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 539..243 | 1425 | 98.7 | Minus |
3L | 28110227 | 3L | 5362101..5362332 | 246..15 | 1160 | 100 | Minus |
3L | 28110227 | 3L | 5361491..5361627 | 673..537 | 670 | 99.3 | Minus |
3L | 28110227 | 3L | 5360875..5361025 | 822..672 | 665 | 96 | Minus |
3R | 32079331 | 3R | 29203044..29203499 | 258..713 | 660 | 76.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:47:45 has no hits.
BS05476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:34 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 91..924 | 17..850 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:29 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 91..924 | 17..850 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:49 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 220..1060 | 10..850 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:18 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 220..1060 | 10..850 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:18 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5361695..5361988 | 245..538 | 98 | -> | Minus |
3L | 5360710..5360739 | 821..850 | 93 | -> | Minus |
3L | 5360877..5361025 | 672..820 | 98 | -> | Minus |
3L | 5361493..5361625 | 539..671 | 99 | -> | Minus |
3L | 5362103..5362337 | 10..244 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:49 Download gff for
BS05476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5353810..5353839 | 821..850 | 93 | -> | Minus |
arm_3L | 5353977..5354125 | 672..820 | 98 | -> | Minus |
arm_3L | 5354593..5354725 | 539..671 | 99 | -> | Minus |
arm_3L | 5354795..5355088 | 245..538 | 98 | -> | Minus |
arm_3L | 5355203..5355437 | 10..244 | 99 | | Minus |
BS05476.5prime Sequence
880 bp (757 high quality bases) assembled on 2005-12-02
> BS05476.5prime
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAG
BS05476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PA | 924 | CG4769-RA | 1..864 | 17..880 | 4170 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 129..993 | 16..880 | 4235 | 99.3 | Plus |
CG4769-RA | 1521 | CG4769-RA | 129..993 | 16..880 | 4235 | 99.3 | Plus |
CG14508-RA | 1293 | CG14508-RA | 454..924 | 244..714 | 675 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 418..714 | 1425 | 98.7 | Plus |
3L | 28110227 | 3L | 5362101..5362270 | 711..880 | 850 | 100 | Plus |
3L | 28110227 | 3L | 5360875..5361025 | 135..285 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5361491..5361627 | 284..420 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 29203044..29203499 | 699..244 | 660 | 76.3 | Minus |
3L | 28110227 | 3L | 5360339..5360412 | 16..89 | 370 | 100 | Plus |
3L | 28110227 | 3L | 5360688..5360739 | 85..136 | 245 | 98.1 | Plus |
Blast to na_te.dros performed 2015-02-09 23:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4184..4248 | 139..208 | 114 | 65.7 | Plus |
BS05476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:35 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:31 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:49 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 120..993 | 8..880 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:13 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 120..993 | 8..880 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:13 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5361493..5361625 | 286..418 | 99 | -> | Plus |
3L | 5360877..5361025 | 137..285 | 100 | -> | Plus |
3L | 5360330..5360411 | 8..88 | 95 | -> | Plus |
3L | 5360692..5360739 | 89..136 | 97 | -> | Plus |
3L | 5361695..5361988 | 419..712 | 98 | -> | Plus |
3L | 5362103..5362270 | 713..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:49 Download gff for
BS05476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5353430..5353511 | 8..88 | 95 | -> | Plus |
arm_3L | 5353792..5353839 | 89..136 | 97 | -> | Plus |
arm_3L | 5353977..5354125 | 137..285 | 100 | -> | Plus |
arm_3L | 5354593..5354725 | 286..418 | 99 | -> | Plus |
arm_3L | 5354795..5355088 | 419..712 | 98 | -> | Plus |
arm_3L | 5355203..5355370 | 713..880 | 100 | | Plus |
BS05476.complete Sequence
956 bp (956 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635134
> BS05476.complete
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGCGGAAGATTGTGTTCGTGCCCAAGGAGAAGTAGAAGCTTTCTA
GACCAT
BS05476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 924 | CG4769-PB | 1..924 | 17..940 | 4530 | 99.4 | Plus |
CG4769-RA | 924 | CG4769-PA | 1..924 | 17..940 | 4530 | 99.4 | Plus |
CG14508-RA | 1035 | CG14508-PA | 237..692 | 244..699 | 660 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 129..1055 | 16..942 | 4545 | 99.4 | Plus |
CG4769-RA | 1521 | CG4769-RA | 129..1055 | 16..942 | 4545 | 99.4 | Plus |
CG14508-RA | 1293 | CG14508-RA | 454..909 | 244..699 | 660 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 418..714 | 1425 | 98.7 | Plus |
3L | 28110227 | 3L | 5362101..5362332 | 711..942 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 5360875..5361025 | 135..285 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5361491..5361627 | 284..420 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 29203044..29203499 | 699..244 | 660 | 76.3 | Minus |
3L | 28110227 | 3L | 5360339..5360412 | 16..89 | 370 | 100 | Plus |
3L | 28110227 | 3L | 5360688..5360739 | 85..136 | 245 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-27 20:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4184..4248 | 139..208 | 114 | 65.7 | Plus |
BS05476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:56 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:51 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 141..1081 | 8..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:10 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 130..1053 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:56 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 141..1081 | 8..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:10 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 130..1053 | 17..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:10 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5360877..5361025 | 137..285 | 100 | -> | Plus |
3L | 5361493..5361625 | 286..418 | 99 | -> | Plus |
3L | 5361695..5361988 | 419..712 | 98 | -> | Plus |
3L | 5362103..5362330 | 713..940 | 100 | | Plus |
3L | 5360340..5360411 | 17..88 | 100 | -> | Plus |
3L | 5360692..5360739 | 89..136 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:10 Download gff for
BS05476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5353440..5353511 | 17..88 | 100 | -> | Plus |
arm_3L | 5353792..5353839 | 89..136 | 97 | -> | Plus |
arm_3L | 5353977..5354125 | 137..285 | 100 | -> | Plus |
arm_3L | 5354593..5354725 | 286..418 | 99 | -> | Plus |
arm_3L | 5354795..5355088 | 419..712 | 98 | -> | Plus |
arm_3L | 5355203..5355430 | 713..940 | 100 | | Plus |
BS05476.pep Sequence
Translation from 16 to 939
> BS05476.pep
MAATLRRFHGLRLLKSAPALSLQQAKNLSSAGSWASGNKKLIGALGAITG
GVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQ
VCSACHSMQYIAYRNLVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPG
KLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGYH
DAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKD
VATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKI
VFVPKEK*
BS05476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PB | 307 | CG4769-PB | 1..307 | 1..307 | 1605 | 100 | Plus |
CG4769-PA | 307 | CG4769-PA | 1..307 | 1..307 | 1605 | 100 | Plus |
CG14508-PA | 344 | CG14508-PA | 35..309 | 32..305 | 1010 | 70.5 | Plus |