Clone Sequence Records
BS05477.3prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-02
> BS05477.3prime
ATGGTCTAGAAAGCTTCTATTGGATGGCTCTGCCGACTCCATCGAAAGCC
TTTTCCTTGTGATCCGCTGCATTGGCACGGGATTCGTAGTTGCATATGGT
TACGCCATGGTAATGAGCTTCTGTGAACTCTCCTCGAAGACCTATATAGT
AAATGCGTGTTATGTCTTCGCCAAAATTGCTGGGAAAGTAGAGGGAGAGA
TGGTGCACGGAGGAGAAGGTGACCACTTTGGGTGAGTACTCGATTTCTCC
GCGGGCATCGCGGGTCAGCTGGAACTCCTGGTCGGGCTTTGCTCTGGCAT
CATCAAAGGTCATCCTGGGTCGGTTCTTGAAGATTTTGACCATGTTTGGA
TGGGAGTCATCATTGGCCCCACTTATGATGATGCCCTTGAGCTTGATGTT
GCCGGTGAAGGGAATGTTGAAGAGGAGCTCTTCATCCGCATCGCTCTCCA
CGTACTTGGACAGATCCTGGCGCTTCTCGTACGGCTTAAAGACACTTTTT
CCCTGGCCATCCGTCTCCTCGTTCAGGCACTCCACATTGTCCAGATCGAT
TTTGGTGTACAAGCTGTACTCGATGCCCATTTCTAGGGCGTGGTCCACGT
CCGAGGCCTCGTGGCTGCAGCCGCCGTGATCGTGAGAGTGTCCGTGCGGC
ATGTCGACTGATAACT
BS05477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PA | 636 | CG6153-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..726 | 652..17 | 3180 | 100 | Minus |
CG6153-RA | 774 | CG6153-RA | 91..726 | 652..17 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 652..333 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 12693466..12693658 | 332..140 | 965 | 100 | Minus |
2L | 23513712 | 2L | 12693718..12693844 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:08:38 has no hits.
BS05477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:36 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:32 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:43 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 11..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:20 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 11..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:20 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693083..12693402 | 333..652 | 100 | -> | Minus |
2L | 12693466..12693656 | 142..332 | 100 | -> | Minus |
2L | 12693720..12693848 | 11..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:43 Download gff for
BS05477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693083..12693402 | 333..652 | 100 | -> | Minus |
arm_2L | 12693466..12693656 | 142..332 | 100 | -> | Minus |
arm_2L | 12693720..12693848 | 11..141 | 97 | | Minus |
BS05477.5prime Sequence
666 bp (665 high quality bases) assembled on 2005-12-02
> BS05477.5prime
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAT
AGAAGCTTTCTAGACC
BS05477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PA | 636 | CG6153-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..726 | 17..652 | 3180 | 100 | Plus |
CG6153-RA | 774 | CG6153-RA | 91..726 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 17..336 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 12693466..12693658 | 337..529 | 965 | 100 | Plus |
2L | 23513712 | 2L | 12693718..12693844 | 526..652 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:06:38 has no hits.
BS05477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:37 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:34 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:14 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:42 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 17..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:42 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
2L | 12693720..12693848 | 528..658 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:14 Download gff for
BS05477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
arm_2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
arm_2L | 12693720..12693848 | 528..658 | 97 | | Plus |
BS05477.complete Sequence
668 bp (668 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635135
> BS05477.complete
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAT
AGAAGCTTTCTAGACCAT
BS05477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 636 | CG6153-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
CG6153-RA | 636 | CG6153-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..726 | 17..652 | 3180 | 100 | Plus |
CG6153-RA | 774 | CG6153-RA | 91..726 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 17..336 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 12693466..12693658 | 337..529 | 965 | 100 | Plus |
2L | 23513712 | 2L | 12693718..12693844 | 526..652 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:06:42 has no hits.
BS05477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:57 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:52 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 98..737 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:35 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..726 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:57 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 61..700 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:08 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..726 | 17..652 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:08 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
2L | 12693720..12693844 | 528..652 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:35 Download gff for
BS05477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693720..12693844 | 528..652 | 100 | | Plus |
arm_2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
arm_2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
BS05477.pep Sequence
Translation from 16 to 651
> BS05477.pep
MPHGHSHDHGGCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQ
GKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDS
HPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKVVTFSSVH
HLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKE
KAFDGVGRAIQ*
BS05477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PC | 211 | CG6153-PC | 1..211 | 1..211 | 1130 | 100 | Plus |
CG6153-PA | 211 | CG6153-PA | 1..211 | 1..211 | 1130 | 100 | Plus |