Clone BS05477 Report

Search the DGRC for BS05477

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG6153-RA
Protein status:BS05477.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05477.3prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-02

> BS05477.3prime
ATGGTCTAGAAAGCTTCTATTGGATGGCTCTGCCGACTCCATCGAAAGCC
TTTTCCTTGTGATCCGCTGCATTGGCACGGGATTCGTAGTTGCATATGGT
TACGCCATGGTAATGAGCTTCTGTGAACTCTCCTCGAAGACCTATATAGT
AAATGCGTGTTATGTCTTCGCCAAAATTGCTGGGAAAGTAGAGGGAGAGA
TGGTGCACGGAGGAGAAGGTGACCACTTTGGGTGAGTACTCGATTTCTCC
GCGGGCATCGCGGGTCAGCTGGAACTCCTGGTCGGGCTTTGCTCTGGCAT
CATCAAAGGTCATCCTGGGTCGGTTCTTGAAGATTTTGACCATGTTTGGA
TGGGAGTCATCATTGGCCCCACTTATGATGATGCCCTTGAGCTTGATGTT
GCCGGTGAAGGGAATGTTGAAGAGGAGCTCTTCATCCGCATCGCTCTCCA
CGTACTTGGACAGATCCTGGCGCTTCTCGTACGGCTTAAAGACACTTTTT
CCCTGGCCATCCGTCTCCTCGTTCAGGCACTCCACATTGTCCAGATCGAT
TTTGGTGTACAAGCTGTACTCGATGCCCATTTCTAGGGCGTGGTCCACGT
CCGAGGCCTCGTGGCTGCAGCCGCCGTGATCGTGAGAGTGTCCGTGCGGC
ATGTCGACTGATAACT

BS05477.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PA 636 CG6153-RA 1..636 652..17 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..726 652..17 3180 100 Minus
CG6153-RA 774 CG6153-RA 91..726 652..17 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 652..333 1600 100 Minus
2L 23513712 2L 12693466..12693658 332..140 965 100 Minus
2L 23513712 2L 12693718..12693844 143..17 635 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:08:38 has no hits.

BS05477.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:36 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:32 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:43 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 11..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:20 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 11..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:20 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12693083..12693402 333..652 100 -> Minus
2L 12693466..12693656 142..332 100 -> Minus
2L 12693720..12693848 11..141 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:43 Download gff for BS05477.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693083..12693402 333..652 100 -> Minus
arm_2L 12693466..12693656 142..332 100 -> Minus
arm_2L 12693720..12693848 11..141 97   Minus

BS05477.5prime Sequence

666 bp (665 high quality bases) assembled on 2005-12-02

> BS05477.5prime
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAT
AGAAGCTTTCTAGACC

BS05477.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PA 636 CG6153-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..726 17..652 3180 100 Plus
CG6153-RA 774 CG6153-RA 91..726 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 17..336 1600 100 Plus
2L 23513712 2L 12693466..12693658 337..529 965 100 Plus
2L 23513712 2L 12693718..12693844 526..652 635 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:06:38 has no hits.

BS05477.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:37 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:34 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:14 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 17..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:42 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 17..658 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:42 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12693083..12693402 17..336 100 -> Plus
2L 12693466..12693656 337..527 100 -> Plus
2L 12693720..12693848 528..658 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:14 Download gff for BS05477.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693083..12693402 17..336 100 -> Plus
arm_2L 12693466..12693656 337..527 100 -> Plus
arm_2L 12693720..12693848 528..658 97   Plus

BS05477.complete Sequence

668 bp (668 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635135

> BS05477.complete
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAT
AGAAGCTTTCTAGACCAT

BS05477.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 636 CG6153-PC 1..636 17..652 3180 100 Plus
CG6153-RA 636 CG6153-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..726 17..652 3180 100 Plus
CG6153-RA 774 CG6153-RA 91..726 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 17..336 1600 100 Plus
2L 23513712 2L 12693466..12693658 337..529 965 100 Plus
2L 23513712 2L 12693718..12693844 526..652 635 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:06:42 has no hits.

BS05477.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:57 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:52 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 98..737 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:35 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..726 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:57 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 61..700 17..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:08 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..726 17..652 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:08 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12693083..12693402 17..336 100 -> Plus
2L 12693466..12693656 337..527 100 -> Plus
2L 12693720..12693844 528..652 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:35 Download gff for BS05477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693720..12693844 528..652 100   Plus
arm_2L 12693083..12693402 17..336 100 -> Plus
arm_2L 12693466..12693656 337..527 100 -> Plus

BS05477.pep Sequence

Translation from 16 to 651

> BS05477.pep
MPHGHSHDHGGCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQ
GKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDS
HPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKVVTFSSVH
HLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKE
KAFDGVGRAIQ*

BS05477.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PC 211 CG6153-PC 1..211 1..211 1130 100 Plus
CG6153-PA 211 CG6153-PA 1..211 1..211 1130 100 Plus