Clone BS05478 Report

Search the DGRC for BS05478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptJafrac1-RA
Protein status:BS05478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05478.3prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-02

> BS05478.3prime
ATGGTCTAGAAAGCTTTTAGGAGGTGGTCTCGAAGTACTCCTTGGACTTG
GTGGGATCGGCCACCATGGTCTTCTGGCCGGGCTTCCAGTTGGCGGGGCA
GACCTCGCCGTACTTGTCGGTGTACTGGAAGGCCTGGACGAGACGCAGGG
TCTCCTCCACACTGCGACCTACGGGCAGATCGTTGACGGTGATCTGGCGC
AAGTTCTGCTTGTCATCGATGATGAACAGGCCGCGGAAGGGGATGCCAGT
CTCCTCATCGAGCACTCCATAGTCGCGGGCCACCTTCATCGACTTGTCAG
CCAGCAGTGGAATGTCCATGCTGCCCAGACCACCCTGCTTCCTTGGCGTG
TTGATCCAGGCCAAGTGGGTGAACTGGCTGTCCGTGGAGCAACCGATCAC
CTCGCAATTGATCTTGCGGAACTCGGCGGCGCTCTCCGAGAACGCAATGA
TCTCGGTGGGGCACACGAAGGTGAAGTCCAGCGGGTAGAAGAAAAGCACC
AGGTATTTGCCCTTGTAGTCGCTCAACTTGATGTCCTTGAAAACACCGTT
GACGACGGCGGTGCCGGCGAATGCGGGAGCGGGCTTCTGTAGCTGGGGCA
TGTCGACTGATAACT

BS05478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1633-PB 585 Jafrac1-RB 1..585 601..17 2925 100 Minus
CG1633-PA 585 Jafrac1-RA 1..585 601..17 2925 100 Minus
CG5826-PA 705 Prx5037-RA 196..263 520..453 140 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..793 602..16 2935 100 Minus
Jafrac1-RE 976 CG1633-RE 104..689 601..16 2930 100 Minus
Jafrac1-RC 1051 CG1633-RC 179..764 601..16 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331707 601..16 2930 100 Minus
3L 28110227 3L 15208172..15208477 361..56 390 75.2 Minus
3L 28110227 3L 3043441..3043611 473..303 240 76 Minus
3L 28110227 3L 3043713..3043818 201..96 185 78.3 Minus
Blast to na_te.dros performed on 2015-02-09 01:54:59 has no hits.

BS05478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:38 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PB 1..585 17..601 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:35 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:58:49 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..803 8..602 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:46 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..803 8..602 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:46 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331717 8..601 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:58:49 Download gff for BS05478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225750 8..601 99   Minus

BS05478.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-11-29

> BS05478.5prime
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCTA
AAAGCTTTCTAGACC

BS05478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1633-PB 585 Jafrac1-RB 1..585 17..601 2925 100 Plus
CG1633-PA 585 Jafrac1-RA 1..585 17..601 2925 100 Plus
CG5826-PA 705 Prx5037-RA 196..263 98..165 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..793 16..602 2935 100 Plus
Jafrac1-RE 976 CG1633-RE 104..689 17..602 2930 100 Plus
Jafrac1-RC 1051 CG1633-RC 179..764 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331707 17..602 2930 100 Plus
3L 28110227 3L 15208172..15208477 257..562 390 75.2 Plus
3L 28110227 3L 3043441..3043611 145..315 240 76 Plus
3L 28110227 3L 3043713..3043818 417..522 185 78.3 Plus
Blast to na_te.dros performed on 2015-02-12 07:11:15 has no hits.

BS05478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:39 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PB 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:36 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:47 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..803 16..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:47 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..803 16..610 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:47 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331717 17..610 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:47 Download gff for BS05478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225750 17..610 99   Plus

BS05478.complete Sequence

617 bp (617 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635136

> BS05478.complete
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCTA
AAAGCTTTCTAGACCAT

BS05478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RE 585 CG1633-PE 1..585 17..601 2925 100 Plus
Jafrac1-RD 585 CG1633-PD 1..585 17..601 2925 100 Plus
Jafrac1-RC 585 CG1633-PC 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..793 16..602 2935 100 Plus
Jafrac1-RE 976 CG1633-RE 104..689 17..602 2930 100 Plus
Jafrac1-RC 1051 CG1633-RC 179..764 17..602 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331707 17..602 2930 100 Plus
3L 28110227 3L 15208172..15208477 257..562 390 75.2 Plus
3L 28110227 3L 3043441..3043611 145..315 240 76 Plus
3L 28110227 3L 3043713..3043818 417..522 185 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 10:43:08 has no hits.

BS05478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:58 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:42 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 130..733 10..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:40 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 208..790 17..599 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:58 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 130..733 10..610 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:05 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 208..790 17..599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:05 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331704 17..599 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:40 Download gff for BS05478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225737 17..599 100   Plus

BS05478.pep Sequence

Translation from 16 to 600

> BS05478.pep
MPQLQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTE
IIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLL
ADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEE
TLRLVQAFQYTDKYGEVCPANWKPGQKTMVADPTKSKEYFETTS*

BS05478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-PE 194 CG1633-PE 1..194 1..194 1021 100 Plus
Jafrac1-PD 194 CG1633-PD 1..194 1..194 1021 100 Plus
Jafrac1-PC 194 CG1633-PC 1..194 1..194 1021 100 Plus
Jafrac1-PA 194 CG1633-PA 1..194 1..194 1021 100 Plus
Jafrac1-PB 194 CG1633-PB 1..194 1..194 1021 100 Plus