Clone Sequence Records
BS05478.3prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-02
> BS05478.3prime
ATGGTCTAGAAAGCTTTTAGGAGGTGGTCTCGAAGTACTCCTTGGACTTG
GTGGGATCGGCCACCATGGTCTTCTGGCCGGGCTTCCAGTTGGCGGGGCA
GACCTCGCCGTACTTGTCGGTGTACTGGAAGGCCTGGACGAGACGCAGGG
TCTCCTCCACACTGCGACCTACGGGCAGATCGTTGACGGTGATCTGGCGC
AAGTTCTGCTTGTCATCGATGATGAACAGGCCGCGGAAGGGGATGCCAGT
CTCCTCATCGAGCACTCCATAGTCGCGGGCCACCTTCATCGACTTGTCAG
CCAGCAGTGGAATGTCCATGCTGCCCAGACCACCCTGCTTCCTTGGCGTG
TTGATCCAGGCCAAGTGGGTGAACTGGCTGTCCGTGGAGCAACCGATCAC
CTCGCAATTGATCTTGCGGAACTCGGCGGCGCTCTCCGAGAACGCAATGA
TCTCGGTGGGGCACACGAAGGTGAAGTCCAGCGGGTAGAAGAAAAGCACC
AGGTATTTGCCCTTGTAGTCGCTCAACTTGATGTCCTTGAAAACACCGTT
GACGACGGCGGTGCCGGCGAATGCGGGAGCGGGCTTCTGTAGCTGGGGCA
TGTCGACTGATAACT
BS05478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1633-PB | 585 | Jafrac1-RB | 1..585 | 601..17 | 2925 | 100 | Minus |
CG1633-PA | 585 | Jafrac1-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
CG5826-PA | 705 | Prx5037-RA | 196..263 | 520..453 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..793 | 602..16 | 2935 | 100 | Minus |
Jafrac1-RE | 976 | CG1633-RE | 104..689 | 601..16 | 2930 | 100 | Minus |
Jafrac1-RC | 1051 | CG1633-RC | 179..764 | 601..16 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331707 | 601..16 | 2930 | 100 | Minus |
3L | 28110227 | 3L | 15208172..15208477 | 361..56 | 390 | 75.2 | Minus |
3L | 28110227 | 3L | 3043441..3043611 | 473..303 | 240 | 76 | Minus |
3L | 28110227 | 3L | 3043713..3043818 | 201..96 | 185 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:54:59 has no hits.
BS05478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:38 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PB | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:35 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:58:49 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..803 | 8..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:11:46 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..803 | 8..602 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:11:46 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331717 | 8..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:58:49 Download gff for
BS05478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225750 | 8..601 | 99 | | Minus |
BS05478.5prime Sequence
615 bp (614 high quality bases) assembled on 2005-11-29
> BS05478.5prime
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCTA
AAAGCTTTCTAGACC
BS05478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1633-PB | 585 | Jafrac1-RB | 1..585 | 17..601 | 2925 | 100 | Plus |
CG1633-PA | 585 | Jafrac1-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG5826-PA | 705 | Prx5037-RA | 196..263 | 98..165 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..793 | 16..602 | 2935 | 100 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 104..689 | 17..602 | 2930 | 100 | Plus |
Jafrac1-RC | 1051 | CG1633-RC | 179..764 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331707 | 17..602 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 15208172..15208477 | 257..562 | 390 | 75.2 | Plus |
3L | 28110227 | 3L | 3043441..3043611 | 145..315 | 240 | 76 | Plus |
3L | 28110227 | 3L | 3043713..3043818 | 417..522 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:11:15 has no hits.
BS05478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:39 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PB | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:36 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:47 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..803 | 16..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:47 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..803 | 16..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:47 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331717 | 17..610 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:47 Download gff for
BS05478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225750 | 17..610 | 99 | | Plus |
BS05478.complete Sequence
617 bp (617 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635136
> BS05478.complete
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCTA
AAAGCTTTCTAGACCAT
BS05478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RE | 585 | CG1633-PE | 1..585 | 17..601 | 2925 | 100 | Plus |
Jafrac1-RD | 585 | CG1633-PD | 1..585 | 17..601 | 2925 | 100 | Plus |
Jafrac1-RC | 585 | CG1633-PC | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..793 | 16..602 | 2935 | 100 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 104..689 | 17..602 | 2930 | 100 | Plus |
Jafrac1-RC | 1051 | CG1633-RC | 179..764 | 17..602 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331707 | 17..602 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 15208172..15208477 | 257..562 | 390 | 75.2 | Plus |
3L | 28110227 | 3L | 3043441..3043611 | 145..315 | 240 | 76 | Plus |
3L | 28110227 | 3L | 3043713..3043818 | 417..522 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:43:08 has no hits.
BS05478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:58 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:42 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 130..733 | 10..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:38:40 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 208..790 | 17..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:58 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 130..733 | 10..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:05 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 208..790 | 17..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:05 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331704 | 17..599 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:38:40 Download gff for
BS05478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225737 | 17..599 | 100 | | Plus |
BS05478.pep Sequence
Translation from 16 to 600
> BS05478.pep
MPQLQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTE
IIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLL
ADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEE
TLRLVQAFQYTDKYGEVCPANWKPGQKTMVADPTKSKEYFETTS*
BS05478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-PE | 194 | CG1633-PE | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PD | 194 | CG1633-PD | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PC | 194 | CG1633-PC | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PA | 194 | CG1633-PA | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PB | 194 | CG1633-PB | 1..194 | 1..194 | 1021 | 100 | Plus |