Clone BS05479 Report

Search the DGRC for BS05479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG7048-RA
Protein status:BS05479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05479.3prime Sequence

537 bp (536 high quality bases) assembled on 2005-12-02

> BS05479.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTCTGGGTAACCGCCGGCTGCGATTGC
TGCTGCGACTGCAATTTCGCTGCAGCAGCCTGCTTCATCTCCAGCACACT
CATCACTGAGTTATAGAAGCGCGTCTTTTGCAGGTGGATCTTTTCGATTT
TCTCGATCTGCTCCTGCACGTACTCCACGCGTCGCTTGAAGTAGTCTTTG
GAGCCTTCCAGATCCTTTTCAATGTAGTAGCCGGTGCCGATGTCTATGAC
GAACCTGTTGAGATCCTTGACCCGTCCTGGCACATACATACTGCTGGTCA
GGGGCACCAGGATCTGACGGTTCTCCCAATTGGGTTGAAAGGTTCCCAGC
GCCTCCTTGGATCCGGCGTACTTGGCTTGACAGCCGTGAAGCGTCGACAG
CGAGTCCTGTACGTTGGTAATCTCCTGCTCGAACTCCTGCTTGATCTGAA
TCAGCTGTTCCGGACTCAACTTGGTCAGGTCGATCATCTCGGACTTGGCG
GGTGCGCTTGGGGTGGCAGCCATGTCGACTGATAACT

BS05479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PA 507 CG7048-RA 1..507 523..17 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..763 523..16 2540 100 Minus
CG7048-RA 657 CG7048-RA 94..601 523..16 2540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 426..214 1065 100 Minus
3R 32079331 3R 22487779..22487979 216..16 1005 100 Minus
3R 32079331 3R 22487294..22487393 523..424 500 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:40:16 has no hits.

BS05479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:40 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..523 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:38 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..523 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:41:01 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 92..605 12..530 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:26 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 90..603 12..530 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:26 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22487290..22487392 425..530 97 -> Minus
3R 22487510..22487719 215..424 100 -> Minus
3R 22487781..22487981 12..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:41:01 Download gff for BS05479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313012..18313114 425..530 97 -> Minus
arm_3R 18313232..18313441 215..424 100 -> Minus
arm_3R 18313503..18313703 12..214 99   Minus

BS05479.5prime Sequence

537 bp (536 high quality bases) assembled on 2005-11-29

> BS05479.5prime
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCTAGAAGCTTTCTAGACC

BS05479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PA 507 CG7048-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..763 17..524 2540 100 Plus
CG7048-RA 657 CG7048-RA 94..601 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 114..326 1065 100 Plus
3R 32079331 3R 22487779..22487979 324..524 1005 100 Plus
3R 32079331 3R 22487294..22487393 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:38:10 has no hits.

BS05479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:41 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:38 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:18 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 92..605 10..528 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:32 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 90..603 10..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:32 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22487290..22487392 10..115 97 -> Plus
3R 22487510..22487719 116..325 100 -> Plus
3R 22487781..22487981 326..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:18 Download gff for BS05479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313012..18313114 10..115 97 -> Plus
arm_3R 18313232..18313441 116..325 100 -> Plus
arm_3R 18313503..18313703 326..528 99   Plus

BS05479.complete Sequence

539 bp (539 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635137

> BS05479.complete
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCTAGAAGCTTTCTAGACCAT

BS05479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 507 CG7048-PB 1..507 17..523 2535 100 Plus
CG7048-RA 507 CG7048-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..763 17..524 2540 100 Plus
CG7048-RA 657 CG7048-RA 94..601 17..524 2540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 114..326 1065 100 Plus
3R 32079331 3R 22487779..22487979 324..524 1005 100 Plus
3R 32079331 3R 22487294..22487393 17..116 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:34:57 has no hits.

BS05479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:59 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:55 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 86..599 10..528 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:31 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 96..602 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:00 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 86..599 10..528 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:49 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 94..600 17..523 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:49 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22487294..22487392 17..115 100 -> Plus
3R 22487510..22487719 116..325 100 -> Plus
3R 22487781..22487978 326..523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:31 Download gff for BS05479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313016..18313114 17..115 100 -> Plus
arm_3R 18313232..18313441 116..325 100 -> Plus
arm_3R 18313503..18313700 326..523 100   Plus

BS05479.pep Sequence

Translation from 16 to 522

> BS05479.pep
MAATPSAPAKSEMIDLTKLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQA
KYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYY
IEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVMSVLEMKQAA
AAKLQSQQQSQPAVTQSS*

BS05479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PB 168 CG7048-PB 1..168 1..168 846 100 Plus
CG7048-PA 168 CG7048-PA 1..168 1..168 846 100 Plus