Clone Sequence Records
BS05479.3prime Sequence
537 bp (536 high quality bases) assembled on 2005-12-02
> BS05479.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTCTGGGTAACCGCCGGCTGCGATTGC
TGCTGCGACTGCAATTTCGCTGCAGCAGCCTGCTTCATCTCCAGCACACT
CATCACTGAGTTATAGAAGCGCGTCTTTTGCAGGTGGATCTTTTCGATTT
TCTCGATCTGCTCCTGCACGTACTCCACGCGTCGCTTGAAGTAGTCTTTG
GAGCCTTCCAGATCCTTTTCAATGTAGTAGCCGGTGCCGATGTCTATGAC
GAACCTGTTGAGATCCTTGACCCGTCCTGGCACATACATACTGCTGGTCA
GGGGCACCAGGATCTGACGGTTCTCCCAATTGGGTTGAAAGGTTCCCAGC
GCCTCCTTGGATCCGGCGTACTTGGCTTGACAGCCGTGAAGCGTCGACAG
CGAGTCCTGTACGTTGGTAATCTCCTGCTCGAACTCCTGCTTGATCTGAA
TCAGCTGTTCCGGACTCAACTTGGTCAGGTCGATCATCTCGGACTTGGCG
GGTGCGCTTGGGGTGGCAGCCATGTCGACTGATAACT
BS05479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PA | 507 | CG7048-RA | 1..507 | 523..17 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..763 | 523..16 | 2540 | 100 | Minus |
CG7048-RA | 657 | CG7048-RA | 94..601 | 523..16 | 2540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 426..214 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 22487779..22487979 | 216..16 | 1005 | 100 | Minus |
3R | 32079331 | 3R | 22487294..22487393 | 523..424 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:40:16 has no hits.
BS05479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:40 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..523 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:38 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..523 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:41:01 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 92..605 | 12..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:26 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 90..603 | 12..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:26 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487290..22487392 | 425..530 | 97 | -> | Minus |
3R | 22487510..22487719 | 215..424 | 100 | -> | Minus |
3R | 22487781..22487981 | 12..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:41:01 Download gff for
BS05479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313012..18313114 | 425..530 | 97 | -> | Minus |
arm_3R | 18313232..18313441 | 215..424 | 100 | -> | Minus |
arm_3R | 18313503..18313703 | 12..214 | 99 | | Minus |
BS05479.5prime Sequence
537 bp (536 high quality bases) assembled on 2005-11-29
> BS05479.5prime
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCTAGAAGCTTTCTAGACC
BS05479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PA | 507 | CG7048-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..763 | 17..524 | 2540 | 100 | Plus |
CG7048-RA | 657 | CG7048-RA | 94..601 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 114..326 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 22487779..22487979 | 324..524 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 22487294..22487393 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:38:10 has no hits.
BS05479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:41 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:38 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:09:18 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 92..605 | 10..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:32 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 90..603 | 10..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:32 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487290..22487392 | 10..115 | 97 | -> | Plus |
3R | 22487510..22487719 | 116..325 | 100 | -> | Plus |
3R | 22487781..22487981 | 326..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:09:18 Download gff for
BS05479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313012..18313114 | 10..115 | 97 | -> | Plus |
arm_3R | 18313232..18313441 | 116..325 | 100 | -> | Plus |
arm_3R | 18313503..18313703 | 326..528 | 99 | | Plus |
BS05479.complete Sequence
539 bp (539 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635137
> BS05479.complete
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCTAGAAGCTTTCTAGACCAT
BS05479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 507 | CG7048-PB | 1..507 | 17..523 | 2535 | 100 | Plus |
CG7048-RA | 507 | CG7048-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..763 | 17..524 | 2540 | 100 | Plus |
CG7048-RA | 657 | CG7048-RA | 94..601 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 114..326 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 22487779..22487979 | 324..524 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 22487294..22487393 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:34:57 has no hits.
BS05479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:59 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:55 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 86..599 | 10..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:31 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 96..602 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:00 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 86..599 | 10..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:49 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 94..600 | 17..523 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:49 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487294..22487392 | 17..115 | 100 | -> | Plus |
3R | 22487510..22487719 | 116..325 | 100 | -> | Plus |
3R | 22487781..22487978 | 326..523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:31 Download gff for
BS05479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313016..18313114 | 17..115 | 100 | -> | Plus |
arm_3R | 18313232..18313441 | 116..325 | 100 | -> | Plus |
arm_3R | 18313503..18313700 | 326..523 | 100 | | Plus |
BS05479.pep Sequence
Translation from 16 to 522
> BS05479.pep
MAATPSAPAKSEMIDLTKLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQA
KYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYY
IEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVMSVLEMKQAA
AAKLQSQQQSQPAVTQSS*
BS05479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PB | 168 | CG7048-PB | 1..168 | 1..168 | 846 | 100 | Plus |
CG7048-PA | 168 | CG7048-PA | 1..168 | 1..168 | 846 | 100 | Plus |