Clone BS05480 Report

Search the DGRC for BS05480

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptGbeta76C-RA
Protein status:BS05480.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05480.3prime Sequence

900 bp (729 high quality bases) assembled on 2005-12-02

> BS05480.3prime
ATGGTCTAGAAAGCTTTTAGAGCCACAGACGCACTTGCTGATCCCAACTG
GTGGACGCCAGGCACATGCCATTGGGGCACAGGCTGATGCAAGTGATGCG
GTTCTCGTGACCAGACAGTGTGCCCGTGTGCCGCTGCTTCATCGTGTCCC
ACGAGTGCACGTTGCCCTCAATGCCGCCGCACATGAGGTAGCGCCCGCTG
GTCGATAGAGCGCACGACGTGAAGCCAGTGTTCTTCTGGGGCGGTTCATA
CTGGGCGATTTGCTGGTCCGCCCGCAGGTCGTACATGCGCGCCGTTTGGT
CCTCCGAGCAGGAGGCGAACCCGAAGCCACTGGGATGGTAGCAGACGGAT
GACACGTCCATGTCGTGACCGAAGAACATCTGCTTGTGGCCCTCCTCTCG
CACATCCCACAACTTGGCAGTTTTGTCCACAGAGCCAGTGATATAGGTCT
TCATATCTGGCGAAAGCGATAAGCCAGCGATATCACCAGCGTGTCCATTG
AAATCCATTGTCTTGACACCCTTCTCCAGATCCCAATGGCATATTTTCAT
ATCTCCCGAGCCGGTGATCAGATGGCCATCGTCGAGGAAGCGACAGGAGC
TGAGGAATCCCTCGTAGCCCATCAGCTCTTTGACCATCTTGGCCACTCCG
GAGGCATCGCGATTGTTCACATCGTAGACGGTGCACTGGTTGTCCATTCC
TCCGCAGGCCACAAAGTTACCCGACGGCGAANAGGCCACCGTCATTACCC
AGGCGGATCTCAAGGGGATGATCTGCACCTTGTTGGCGGTCCAGGTGTCC
CAGATGATCAGCTTGCCGTCCAGCGATCCAGTGACGCAGTGCCGCGAGTC
CCCGGCAAAATGCACCGAATTCACCTTGTTGATGTGGCCCTTGAGATCTT

BS05480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8770-PA 1041 Gbeta76C-RA 162..1041 896..17 4381 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 253..1132 896..17 4389 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688310..19688663 896..543 1759 99.7 Minus
3L 28110227 3L 19688718..19688919 542..341 1010 100 Minus
3L 28110227 3L 19689059..19689188 340..211 650 100 Minus
3L 28110227 3L 19689547..19689658 128..17 545 99.1 Minus
3L 28110227 3L 19689271..19689359 211..123 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:20:34 has no hits.

BS05480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:42 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 157..1041 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:40 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 157..1041 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:48:02 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 248..1135 12..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 248..1135 12..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19688305..19688663 543..900 99 -> Minus
3L 19688718..19688919 341..542 100 -> Minus
3L 19689059..19689188 211..340 100 -> Minus
3L 19689272..19689358 124..210 100 -> Minus
3L 19689552..19689661 12..123 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:48:02 Download gff for BS05480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19681405..19681763 543..900 99 -> Minus
arm_3L 19681818..19682019 341..542 100 -> Minus
arm_3L 19682159..19682288 211..340 100 -> Minus
arm_3L 19682372..19682458 124..210 100 -> Minus
arm_3L 19682652..19682761 12..123 97   Minus

BS05480.5prime Sequence

897 bp (766 high quality bases) assembled on 2005-12-02

> BS05480.5prime
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCCAAACGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGG

BS05480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8770-PA 1041 Gbeta76C-RA 1..881 17..897 4330 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 92..972 17..897 4360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688212..19688663 80..531 2245 99.8 Plus
3L 28110227 3L 19688718..19688919 532..733 1010 100 Plus
3L 28110227 3L 19689059..19689188 734..863 605 97.7 Plus
3L 28110227 3L 19687728..19687797 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:55:02 has no hits.

BS05480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:43 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:41 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:37 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 88..972 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:07 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 88..972 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:07 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19689059..19689188 734..863 98 -> Plus
3L 19689272..19689305 864..897 100   Plus
3L 19687724..19687796 9..85 94 -> Plus
3L 19688218..19688663 86..531 100 -> Plus
3L 19688718..19688919 532..733 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:37 Download gff for BS05480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19680824..19680896 9..85 94 -> Plus
arm_3L 19681318..19681763 86..531 100 -> Plus
arm_3L 19681818..19682019 532..733 100 -> Plus
arm_3L 19682159..19682288 734..863 98 -> Plus
arm_3L 19682372..19682405 864..897 100   Plus

BS05480.complete Sequence

1073 bp (1073 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635138

> BS05480.complete
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGGCGG
CATTGAGGGCAACGTGCACTCGTGGGACACGATGAAGCAGCGGCACACGG
GCACACTGTCTGGTCACGAGAACCGCATCACTTGCATCAGCCTGTGCCCC
AATGGCATGTGCCTGGCGTCCACCAGTTGGGATCAGCAAGTGCGTCTGTG
GCTCTAAAAGCTTTCTAGACCAT

BS05480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1041 CG8770-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 92..1132 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688212..19688663 80..531 2245 99.8 Plus
3L 28110227 3L 19688718..19688919 532..733 1010 100 Plus
3L 28110227 3L 19689059..19689188 734..863 650 100 Plus
3L 28110227 3L 19689547..19689658 946..1057 545 99.1 Plus
3L 28110227 3L 19689271..19689359 863..951 445 100 Plus
3L 28110227 3L 19687728..19687797 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:01:57 has no hits.

BS05480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:01 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:56 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 97..1144 9..1062 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:19 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 92..1130 17..1055 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:01 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 97..1144 9..1062 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:08 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 92..1130 17..1055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:08 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19687728..19687796 17..85 100 -> Plus
3L 19689272..19689358 864..950 100 -> Plus
3L 19689552..19689656 951..1055 100   Plus
3L 19688718..19688919 532..733 100 -> Plus
3L 19689059..19689188 734..863 100 -> Plus
3L 19688218..19688663 86..531 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:19 Download gff for BS05480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19680828..19680896 17..85 100 -> Plus
arm_3L 19681318..19681763 86..531 100 -> Plus
arm_3L 19681818..19682019 532..733 100 -> Plus
arm_3L 19682159..19682288 734..863 100 -> Plus
arm_3L 19682372..19682458 864..950 100 -> Plus
arm_3L 19682652..19682756 951..1055 100   Plus

BS05480.pep Sequence

Translation from 16 to 1056

> BS05480.pep
MPKIDPETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFS
SKKILKGHINKVNSVHFAGDSRHCVTGSLDGKLIIWDTWTANKVQIIPLR
SAWVMTVAFSPSGNFVACGGMDNQCTVYDVNNRDASGVAKMVKELMGYEG
FLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDFNGHAGDIAGLSLSP
DMKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGFGFASC
SEDQTARMYDLRADQQIAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNV
HSWDTMKQRHTGTLSGHENRITCISLCPNGMCLASTSWDQQVRLWL*

BS05480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-PA 346 CG8770-PA 1..346 1..346 1889 100 Plus
Gbeta13F-PH 340 CG10545-PH 3..339 7..345 838 43.7 Plus
Gbeta13F-PG 340 CG10545-PG 3..339 7..345 838 43.7 Plus
Gbeta13F-PF 340 CG10545-PF 3..339 7..345 838 43.7 Plus
Gbeta13F-PE 340 CG10545-PE 3..339 7..345 838 43.7 Plus