Clone Sequence Records
BS05480.3prime Sequence
900 bp (729 high quality bases) assembled on 2005-12-02
> BS05480.3prime
ATGGTCTAGAAAGCTTTTAGAGCCACAGACGCACTTGCTGATCCCAACTG
GTGGACGCCAGGCACATGCCATTGGGGCACAGGCTGATGCAAGTGATGCG
GTTCTCGTGACCAGACAGTGTGCCCGTGTGCCGCTGCTTCATCGTGTCCC
ACGAGTGCACGTTGCCCTCAATGCCGCCGCACATGAGGTAGCGCCCGCTG
GTCGATAGAGCGCACGACGTGAAGCCAGTGTTCTTCTGGGGCGGTTCATA
CTGGGCGATTTGCTGGTCCGCCCGCAGGTCGTACATGCGCGCCGTTTGGT
CCTCCGAGCAGGAGGCGAACCCGAAGCCACTGGGATGGTAGCAGACGGAT
GACACGTCCATGTCGTGACCGAAGAACATCTGCTTGTGGCCCTCCTCTCG
CACATCCCACAACTTGGCAGTTTTGTCCACAGAGCCAGTGATATAGGTCT
TCATATCTGGCGAAAGCGATAAGCCAGCGATATCACCAGCGTGTCCATTG
AAATCCATTGTCTTGACACCCTTCTCCAGATCCCAATGGCATATTTTCAT
ATCTCCCGAGCCGGTGATCAGATGGCCATCGTCGAGGAAGCGACAGGAGC
TGAGGAATCCCTCGTAGCCCATCAGCTCTTTGACCATCTTGGCCACTCCG
GAGGCATCGCGATTGTTCACATCGTAGACGGTGCACTGGTTGTCCATTCC
TCCGCAGGCCACAAAGTTACCCGACGGCGAANAGGCCACCGTCATTACCC
AGGCGGATCTCAAGGGGATGATCTGCACCTTGTTGGCGGTCCAGGTGTCC
CAGATGATCAGCTTGCCGTCCAGCGATCCAGTGACGCAGTGCCGCGAGTC
CCCGGCAAAATGCACCGAATTCACCTTGTTGATGTGGCCCTTGAGATCTT
BS05480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8770-PA | 1041 | Gbeta76C-RA | 162..1041 | 896..17 | 4381 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 253..1132 | 896..17 | 4389 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688310..19688663 | 896..543 | 1759 | 99.7 | Minus |
3L | 28110227 | 3L | 19688718..19688919 | 542..341 | 1010 | 100 | Minus |
3L | 28110227 | 3L | 19689059..19689188 | 340..211 | 650 | 100 | Minus |
3L | 28110227 | 3L | 19689547..19689658 | 128..17 | 545 | 99.1 | Minus |
3L | 28110227 | 3L | 19689271..19689359 | 211..123 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:20:34 has no hits.
BS05480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:42 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 157..1041 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:40 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 157..1041 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:48:02 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 248..1135 | 12..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:51 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 248..1135 | 12..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:51 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19688305..19688663 | 543..900 | 99 | -> | Minus |
3L | 19688718..19688919 | 341..542 | 100 | -> | Minus |
3L | 19689059..19689188 | 211..340 | 100 | -> | Minus |
3L | 19689272..19689358 | 124..210 | 100 | -> | Minus |
3L | 19689552..19689661 | 12..123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:48:02 Download gff for
BS05480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19681405..19681763 | 543..900 | 99 | -> | Minus |
arm_3L | 19681818..19682019 | 341..542 | 100 | -> | Minus |
arm_3L | 19682159..19682288 | 211..340 | 100 | -> | Minus |
arm_3L | 19682372..19682458 | 124..210 | 100 | -> | Minus |
arm_3L | 19682652..19682761 | 12..123 | 97 | | Minus |
BS05480.5prime Sequence
897 bp (766 high quality bases) assembled on 2005-12-02
> BS05480.5prime
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCCAAACGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGG
BS05480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8770-PA | 1041 | Gbeta76C-RA | 1..881 | 17..897 | 4330 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 92..972 | 17..897 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688212..19688663 | 80..531 | 2245 | 99.8 | Plus |
3L | 28110227 | 3L | 19688718..19688919 | 532..733 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19689059..19689188 | 734..863 | 605 | 97.7 | Plus |
3L | 28110227 | 3L | 19687728..19687797 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:55:02 has no hits.
BS05480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:43 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:41 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:37 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 88..972 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:07 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 88..972 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:07 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19689059..19689188 | 734..863 | 98 | -> | Plus |
3L | 19689272..19689305 | 864..897 | 100 | | Plus |
3L | 19687724..19687796 | 9..85 | 94 | -> | Plus |
3L | 19688218..19688663 | 86..531 | 100 | -> | Plus |
3L | 19688718..19688919 | 532..733 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:37 Download gff for
BS05480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19680824..19680896 | 9..85 | 94 | -> | Plus |
arm_3L | 19681318..19681763 | 86..531 | 100 | -> | Plus |
arm_3L | 19681818..19682019 | 532..733 | 100 | -> | Plus |
arm_3L | 19682159..19682288 | 734..863 | 98 | -> | Plus |
arm_3L | 19682372..19682405 | 864..897 | 100 | | Plus |
BS05480.complete Sequence
1073 bp (1073 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635138
> BS05480.complete
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGGCGG
CATTGAGGGCAACGTGCACTCGTGGGACACGATGAAGCAGCGGCACACGG
GCACACTGTCTGGTCACGAGAACCGCATCACTTGCATCAGCCTGTGCCCC
AATGGCATGTGCCTGGCGTCCACCAGTTGGGATCAGCAAGTGCGTCTGTG
GCTCTAAAAGCTTTCTAGACCAT
BS05480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1041 | CG8770-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 92..1132 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688212..19688663 | 80..531 | 2245 | 99.8 | Plus |
3L | 28110227 | 3L | 19688718..19688919 | 532..733 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19689059..19689188 | 734..863 | 650 | 100 | Plus |
3L | 28110227 | 3L | 19689547..19689658 | 946..1057 | 545 | 99.1 | Plus |
3L | 28110227 | 3L | 19689271..19689359 | 863..951 | 445 | 100 | Plus |
3L | 28110227 | 3L | 19687728..19687797 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:01:57 has no hits.
BS05480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:01 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:56 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 97..1144 | 9..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:19 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 92..1130 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:01 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 97..1144 | 9..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:08 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 92..1130 | 17..1055 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:08 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19687728..19687796 | 17..85 | 100 | -> | Plus |
3L | 19689272..19689358 | 864..950 | 100 | -> | Plus |
3L | 19689552..19689656 | 951..1055 | 100 | | Plus |
3L | 19688718..19688919 | 532..733 | 100 | -> | Plus |
3L | 19689059..19689188 | 734..863 | 100 | -> | Plus |
3L | 19688218..19688663 | 86..531 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:19 Download gff for
BS05480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19680828..19680896 | 17..85 | 100 | -> | Plus |
arm_3L | 19681318..19681763 | 86..531 | 100 | -> | Plus |
arm_3L | 19681818..19682019 | 532..733 | 100 | -> | Plus |
arm_3L | 19682159..19682288 | 734..863 | 100 | -> | Plus |
arm_3L | 19682372..19682458 | 864..950 | 100 | -> | Plus |
arm_3L | 19682652..19682756 | 951..1055 | 100 | | Plus |
BS05480.pep Sequence
Translation from 16 to 1056
> BS05480.pep
MPKIDPETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFS
SKKILKGHINKVNSVHFAGDSRHCVTGSLDGKLIIWDTWTANKVQIIPLR
SAWVMTVAFSPSGNFVACGGMDNQCTVYDVNNRDASGVAKMVKELMGYEG
FLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDFNGHAGDIAGLSLSP
DMKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGFGFASC
SEDQTARMYDLRADQQIAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNV
HSWDTMKQRHTGTLSGHENRITCISLCPNGMCLASTSWDQQVRLWL*
BS05480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-PA | 346 | CG8770-PA | 1..346 | 1..346 | 1889 | 100 | Plus |
Gbeta13F-PH | 340 | CG10545-PH | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PG | 340 | CG10545-PG | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PF | 340 | CG10545-PF | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PE | 340 | CG10545-PE | 3..339 | 7..345 | 838 | 43.7 | Plus |