Clone BS05481 Report

Search the DGRC for BS05481

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptcbx-RB
Protein status:BS05481.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05481.3prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-02

> BS05481.3prime
ATGGTCTAGAAAGCTTTTACTCAATGCTAAGTGGCTTAAACTCGCCCTCC
TTAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGA
AGGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCC
CGTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCG
GTGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTG
TACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCT
CGCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGA
TCGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTC
TCCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGT
ACGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGA
AGACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAA
AACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACT
GCAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCC
GACTCAATCATTTTGTATTCGGCCAGAATTTTATACTCCTGCTGTATGGT
TGTGATCAGCAACTTGTCATCTTTCTTATGCGCATCCAAATCGAGAGTCA
TGTCGACTGATAACT

BS05481.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PB 735 cbx-RB 1..735 751..17 3675 100 Minus
CG10536-PA 645 cbx-RA 1..645 661..17 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 94..830 751..15 3685 100 Minus
cbx-RA 1036 CG10536-RA 253..958 720..15 3530 100 Minus
cbx-RC 766 CG10536-RC 72..456 724..322 1735 95.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864588..9865070 15..497 2415 100 Plus
2R 25286936 2R 9865124..9865227 497..600 520 100 Plus
2R 25286936 2R 9865424..9865509 666..751 430 100 Plus
2R 25286936 2R 9865290..9865354 601..665 325 100 Plus
Blast to na_te.dros performed on 2015-02-01 08:54:36 has no hits.

BS05481.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:44 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:42 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:18 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..838 7..751 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:38 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..838 7..751 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:38 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864580..9865069 7..496 99 <- Plus
2R 9865124..9865227 497..600 100 <- Plus
2R 9865290..9865354 601..665 100 <- Plus
2R 9865424..9865509 666..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:18 Download gff for BS05481.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752085..5752574 7..496 99 <- Plus
arm_2R 5752629..5752732 497..600 100 <- Plus
arm_2R 5752795..5752859 601..665 100 <- Plus
arm_2R 5752929..5753014 666..751 100   Plus

BS05481.5prime Sequence

765 bp (708 high quality bases) assembled on 2005-11-29

> BS05481.5prime
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGTA
NNAGCTTTCTAGACC

BS05481.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10536-PB 735 cbx-RB 1..734 17..750 3670 100 Plus
CG10536-PA 645 cbx-RA 1..644 107..750 3220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 94..827 17..750 3670 100 Plus
cbx-RA 1036 CG10536-RA 253..955 48..750 3515 100 Plus
cbx-RC 766 CG10536-RC 72..456 44..446 1735 95.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864591..9865070 750..271 2400 100 Minus
2R 25286936 2R 9865124..9865227 271..168 520 100 Minus
2R 25286936 2R 9865424..9865509 102..17 430 100 Minus
2R 25286936 2R 9865290..9865354 167..103 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:42:25 has no hits.

BS05481.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:45 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-PB 1..735 17..751 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:44 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10536-PB 1..735 17..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:40 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..827 17..750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:27 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..827 17..750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:27 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9864591..9865069 272..750 100 <- Minus
2R 9865124..9865227 168..271 100 <- Minus
2R 9865290..9865354 103..167 100 <- Minus
2R 9865424..9865509 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:40 Download gff for BS05481.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752795..5752859 103..167 100 <- Minus
arm_2R 5752929..5753014 17..102 100   Minus
arm_2R 5752096..5752574 272..750 100 <- Minus
arm_2R 5752629..5752732 168..271 100 <- Minus

BS05481.complete Sequence

767 bp (767 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635139

> BS05481.complete
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGTA
AAAGCTTTCTAGACCAT

BS05481.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 735 CG10536-PB 1..735 17..751 3675 100 Plus
cbx-RA 645 CG10536-PA 1..645 107..751 3225 100 Plus
cbx-RC 552 CG10536-PC 1..322 107..446 1395 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-RB 908 CG10536-RB 94..830 17..753 3685 100 Plus
cbx-RA 1036 CG10536-RA 253..958 48..753 3530 100 Plus
cbx-RC 766 CG10536-RC 72..456 44..446 1710 95.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9864588..9865070 753..271 2415 100 Minus
2R 25286936 2R 9865124..9865227 271..168 520 100 Minus
2R 25286936 2R 9865424..9865509 102..17 430 100 Minus
2R 25286936 2R 9865290..9865354 167..103 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:09:26 has no hits.

BS05481.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:02 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:58 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 75..819 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:36 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..826 17..749 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:02 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 75..819 17..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:40 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
cbx-RB 94..826 17..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:40 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9864592..9865069 272..749 100 <- Minus
2R 9865124..9865227 168..271 100 <- Minus
2R 9865290..9865354 103..167 100 <- Minus
2R 9865424..9865509 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:36 Download gff for BS05481.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5752097..5752574 272..749 100 <- Minus
arm_2R 5752629..5752732 168..271 100 <- Minus
arm_2R 5752795..5752859 103..167 100 <- Minus
arm_2R 5752929..5753014 17..102 100   Minus

BS05481.pep Sequence

Translation from 16 to 750

> BS05481.pep
MTLDLDAHKKDDKLLITTIQQEYKILAEYKMIESEKLSGIYVIPSYANSL
QWFGVFFGRQGLYAESVFRFTILLPDRFPDDKSLPSIIFQQDVIHPHVCP
YTHSLDVSHAFPEWRCGEDHLWQLLKYLQVIFSDPLDSIRGIEVDKLKNS
EAAELLMNNKEEYVARVQENIKESKEHIFDTPPTEDPHYIVFEKFQQDVH
GPVLERIKAGRSKLTEPSAQQANGGHATGLSWVKEGEFKPLSIE*

BS05481.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
cbx-PB 244 CG10536-PB 1..244 1..244 1290 100 Plus
cbx-PA 214 CG10536-PA 1..214 31..244 1139 100 Plus
cbx-PC 183 CG10536-PC 1..183 31..244 937 85.5 Plus
CG16894-PA 266 CG16894-PA 11..211 16..209 492 45.5 Plus