Clone Sequence Records
BS05481.3prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-02
> BS05481.3prime
ATGGTCTAGAAAGCTTTTACTCAATGCTAAGTGGCTTAAACTCGCCCTCC
TTAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGA
AGGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCC
CGTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCG
GTGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTG
TACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCT
CGCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGA
TCGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTC
TCCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGT
ACGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGA
AGACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAA
AACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACT
GCAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCC
GACTCAATCATTTTGTATTCGGCCAGAATTTTATACTCCTGCTGTATGGT
TGTGATCAGCAACTTGTCATCTTTCTTATGCGCATCCAAATCGAGAGTCA
TGTCGACTGATAACT
BS05481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..735 | 751..17 | 3675 | 100 | Minus |
CG10536-PA | 645 | cbx-RA | 1..645 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..830 | 751..15 | 3685 | 100 | Minus |
cbx-RA | 1036 | CG10536-RA | 253..958 | 720..15 | 3530 | 100 | Minus |
cbx-RC | 766 | CG10536-RC | 72..456 | 724..322 | 1735 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864588..9865070 | 15..497 | 2415 | 100 | Plus |
2R | 25286936 | 2R | 9865124..9865227 | 497..600 | 520 | 100 | Plus |
2R | 25286936 | 2R | 9865424..9865509 | 666..751 | 430 | 100 | Plus |
2R | 25286936 | 2R | 9865290..9865354 | 601..665 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:54:36 has no hits.
BS05481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:44 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:42 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:30:18 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..838 | 7..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:56:38 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..838 | 7..751 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:56:38 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864580..9865069 | 7..496 | 99 | <- | Plus |
2R | 9865124..9865227 | 497..600 | 100 | <- | Plus |
2R | 9865290..9865354 | 601..665 | 100 | <- | Plus |
2R | 9865424..9865509 | 666..751 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:30:18 Download gff for
BS05481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752085..5752574 | 7..496 | 99 | <- | Plus |
arm_2R | 5752629..5752732 | 497..600 | 100 | <- | Plus |
arm_2R | 5752795..5752859 | 601..665 | 100 | <- | Plus |
arm_2R | 5752929..5753014 | 666..751 | 100 | | Plus |
BS05481.5prime Sequence
765 bp (708 high quality bases) assembled on 2005-11-29
> BS05481.5prime
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGTA
NNAGCTTTCTAGACC
BS05481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..734 | 17..750 | 3670 | 100 | Plus |
CG10536-PA | 645 | cbx-RA | 1..644 | 107..750 | 3220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..827 | 17..750 | 3670 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 253..955 | 48..750 | 3515 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 72..456 | 44..446 | 1735 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864591..9865070 | 750..271 | 2400 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 271..168 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865509 | 102..17 | 430 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 167..103 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:42:25 has no hits.
BS05481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:45 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:44 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..735 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:40 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..827 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:27 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..827 | 17..750 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:27 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864591..9865069 | 272..750 | 100 | <- | Minus |
2R | 9865124..9865227 | 168..271 | 100 | <- | Minus |
2R | 9865290..9865354 | 103..167 | 100 | <- | Minus |
2R | 9865424..9865509 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:40 Download gff for
BS05481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752795..5752859 | 103..167 | 100 | <- | Minus |
arm_2R | 5752929..5753014 | 17..102 | 100 | | Minus |
arm_2R | 5752096..5752574 | 272..750 | 100 | <- | Minus |
arm_2R | 5752629..5752732 | 168..271 | 100 | <- | Minus |
BS05481.complete Sequence
767 bp (767 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635139
> BS05481.complete
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGTA
AAAGCTTTCTAGACCAT
BS05481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 735 | CG10536-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
cbx-RA | 645 | CG10536-PA | 1..645 | 107..751 | 3225 | 100 | Plus |
cbx-RC | 552 | CG10536-PC | 1..322 | 107..446 | 1395 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..830 | 17..753 | 3685 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 253..958 | 48..753 | 3530 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 72..456 | 44..446 | 1710 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864588..9865070 | 753..271 | 2415 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 271..168 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865509 | 102..17 | 430 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 167..103 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:26 has no hits.
BS05481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:02 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:58 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 75..819 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:36 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..826 | 17..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:02 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 75..819 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:40 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..826 | 17..749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:40 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864592..9865069 | 272..749 | 100 | <- | Minus |
2R | 9865124..9865227 | 168..271 | 100 | <- | Minus |
2R | 9865290..9865354 | 103..167 | 100 | <- | Minus |
2R | 9865424..9865509 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:36 Download gff for
BS05481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752097..5752574 | 272..749 | 100 | <- | Minus |
arm_2R | 5752629..5752732 | 168..271 | 100 | <- | Minus |
arm_2R | 5752795..5752859 | 103..167 | 100 | <- | Minus |
arm_2R | 5752929..5753014 | 17..102 | 100 | | Minus |
BS05481.pep Sequence
Translation from 16 to 750
> BS05481.pep
MTLDLDAHKKDDKLLITTIQQEYKILAEYKMIESEKLSGIYVIPSYANSL
QWFGVFFGRQGLYAESVFRFTILLPDRFPDDKSLPSIIFQQDVIHPHVCP
YTHSLDVSHAFPEWRCGEDHLWQLLKYLQVIFSDPLDSIRGIEVDKLKNS
EAAELLMNNKEEYVARVQENIKESKEHIFDTPPTEDPHYIVFEKFQQDVH
GPVLERIKAGRSKLTEPSAQQANGGHATGLSWVKEGEFKPLSIE*
BS05481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-PB | 244 | CG10536-PB | 1..244 | 1..244 | 1290 | 100 | Plus |
cbx-PA | 214 | CG10536-PA | 1..214 | 31..244 | 1139 | 100 | Plus |
cbx-PC | 183 | CG10536-PC | 1..183 | 31..244 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 11..211 | 16..209 | 492 | 45.5 | Plus |