Clone Sequence Records
BS05486.3prime Sequence
900 bp (735 high quality bases) assembled on 2005-12-02
> BS05486.3prime
ATGGTCTAGAAAGCTTTTATTCCCGATCCTTCTTGCTGACGTACTCCACG
CACTTGGAGGGATCGGTGGGAAAGTACTCTTGGCACTTGGTCATCAGTCG
TTTGAGACCCTGGATGTACTTCCGTTGTGTTTCATCGTTCATTACGTGGG
CTACGTTTTTGGAGAAAATCTTTTCGCGACCCGTACGAGCGTGGATACCC
ACCATAGTGACACCAATGGGCCAAGGCGCGTTTCCGATGGCCATTTCTAG
GTAGGCATCGCTTGCTGTGATATAGTTGCGGTTGAGCAGGTGCTTGCAGA
TGTCTCGCAGACTGTCCAGAATGTCCTCTGGCAGGGTGTGATGCTTTAAC
TTGCGAAACAGCGGCTTAACGTATTCCTTAGTCTGCGTGTAAATGACGCG
GGTCATTTTCACCTTTGTGGACATCTTTTCGTGCTTGCTGTAGTTGGCGA
TCTGGTCGTTCCACAGCTTGAGCAGGAAGGTGAGCAGCGTGATGATCACA
TCCATGTCGTAGTCCTTGTTGCGGCCCATATTTGCAGCCATTGTCTGTAT
GCTCTCCCACGACACGGACTCGTCGAGCTCAGCGAAGTCCGACTTCTTGT
CTTCCTTGGTGGTGGGTGTGTTGGCGAACATCTCCTGCAGGTAGGCGGCG
TCCACCTGCTCCATGGCCTCCTGGAAATCGTTGCGGAAACCGCGATTTGC
CTCTGGCTGCGAAATCTCGCATTGTCGCAATCGGTCAAAGGCCTCGGGCT
CCGTCTCGCCAAATATAAGGATGGGTTCGCCGCGTTCCCTTAGGCTCCGA
ATGACCTCCGTGCGCGGCAATATGTTCTGGCCATCGGCCACAAAACTGTA
CGCGCCTTCGGTCGTTTGTCCTTGTGCCTCGACGGACTCCTGCTTTATGT
BS05486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6011-PA | 1023 | Prp18-RA | 140..1023 | 900..17 | 4395 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp18-RA | 1304 | CG6011-RA | 218..1102 | 900..16 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19030170..19031054 | 16..900 | 4410 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:39:44 has no hits.
BS05486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:53 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-PA | 140..1023 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:54 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6011-PA | 140..1023 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:56 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 198..1085 | 11..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:19 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 218..1105 | 11..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:19 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19030167..19031054 | 11..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:56 Download gff for
BS05486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14855889..14856776 | 11..900 | 99 | | Plus |
BS05486.5prime Sequence
891 bp (725 high quality bases) assembled on 2005-12-02
> BS05486.5prime
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGCAAGCACCTGCTCAAACCGCACTATATCACAGCAAGCGATG
CCTACCTAGAAATGGCCATCGGAAACGCGCCTTGGCCCATTGGTGTCACT
ATGGTGGGTATCCACGCTCGTACGGGTCGCGAAAAGATTTT
BS05486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6011-PA | 1023 | Prp18-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
| CG6011-PA | 1023 | Prp18-RA | 764..875 | 780..891 | 560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp18-RA | 1304 | CG6011-RA | 77..953 | 15..891 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19030319..19031195 | 891..15 | 4325 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:03:50 has no hits.
BS05486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:54 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:56 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6011-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:14:21 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 46..933 | 2..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:57 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 66..953 | 2..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:57 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19030319..19031205 | 2..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:14:21 Download gff for
BS05486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14856041..14856927 | 2..891 | 99 | | Minus |
BS05486.complete Sequence
1055 bp (1055 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635140
> BS05486.complete
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGCAAGCACCTGCTCAACCGCAACTATATCACAGCAAGCGATG
CCTACCTAGAAATGGCCATCGGAAACGCGCCTTGGCCCATTGGTGTCACT
ATGGTGGGTATCCACGCTCGTACGGGTCGCGAAAAGATTTTCTCCAAAAA
CGTAGCCCACGTAATGAACGATGAAACACAACGGAAGTACATCCAGGGTC
TCAAACGACTGATGACCAAGTGCCAAGAGTACTTTCCCACCGATCCCTCC
AAGTGCGTGGAGTACGTCAGCAAGAAGGATCGGGAATAAAAGCTTTCTAG
ACCAT
BS05486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp18-RA | 1023 | CG6011-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp18-RA | 1304 | CG6011-RA | 77..1102 | 15..1040 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19030170..19031195 | 1040..15 | 5130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:01:30 has no hits.
BS05486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:03 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:59 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 46..1085 | 2..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:49 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 59..1079 | 17..1037 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:04 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 46..1085 | 2..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:35 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp18-RA | 79..1099 | 17..1037 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:35 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19030173..19031193 | 17..1037 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:49 Download gff for
BS05486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14855895..14856915 | 17..1037 | 100 | | Minus |
BS05486.pep Sequence
Translation from 16 to 1038
> BS05486.pep
MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQ
ESVEAQGQTTEGAYSFVADGQNILPRTEVIRRLRERGEPILIFGETEPEA
FDRLRQCEISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS
DFAELDESVSWESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANY
SKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKH
LLNRNYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVM
NDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVSKKDRE*
BS05486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp18-PA | 340 | CG6011-PA | 1..340 | 1..340 | 1760 | 100 | Plus |
