Clone Sequence Records
BS05487.3prime Sequence
780 bp (779 high quality bases) assembled on 2005-12-02
> BS05487.3prime
ATGGTCTAGAAAGCTTTTAGACCTCGGTGACGGGGCGCTTCTCGATCCAG
GCCTTGATCGGTTCCAAAGCGTTGACGGCATCCACGACTCCGCGCAGAGC
TGGGTAGGGTTCCAACAGATCGCGCTTGACCATGTAGTTCATGTAGTCGG
TGATGCCTGCGAAGTAGACGTCGGCCCAGGTCAGCTTGCCCAGAGCCAGG
TGACCATCGTTGTCCTTGACGGTCTGCTCGAGCTTCTCCAGGTAGAATGG
AATGACCTCCGCATTCAGGGTGACCAACTTCTTCTCTTTAATCTCGTCCT
CCGGCTCGTACGAGACGACTGCAATTTTTAGACGGAAGTCATTGATGGTG
TCAACGACAATGTCGATCTGCAGATCCTCCCACGGAGTAGCGCCGCACAG
GCCGACAGTCTTGGCCAGGAATCGAGCCATCGAAATGCTCTGGTGCACAC
GCTTGCCGTCCACCTCCAGCACGGGCATCTGTCCCATGGGCATGGTGGGC
TTCAGGGCTGGCCACTCGTCGCGGGTGACGCGCACATCCTCGTACTCCTG
GTTGCCGTAGGCGAACAGGTAGCGCAGGGGCTCGGCCAACGCCTTCACGT
TGAAGTAGAAGAGCGTGTAGCTGTGCTTGATGGGCTCGGCGGGCTCTGCT
GGTGGAGCGGCCTCTCCGCCCTCGACGGCACCCTCGGCTCCCTCGGCGGG
TGGTGGCGCCTCTCCCTCGGCTGGTGGTGCTCCCTCAGCTGGTGGTGCTT
GTGCTTCATCGGCCATGTCGACTGATAACT
BS05487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8938-PA | 750 | GstS1-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
CG8938-PB | 750 | GstS1-RB | 1..750 | 766..17 | 3750 | 100 | Minus |
CG8938-PC | 750 | GstS1-RC | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstS1-RC | 1461 | CG8938-RC | 525..1274 | 766..17 | 3750 | 100 | Minus |
GstS1-RB | 1402 | CG8938-RB | 235..984 | 766..17 | 3750 | 100 | Minus |
GstS1-RA | 1764 | CG8938-RA | 200..949 | 766..17 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17094765..17095035 | 496..766 | 1355 | 100 | Plus |
2R | 25286936 | 2R | 17094061..17094230 | 17..186 | 850 | 100 | Plus |
2R | 25286936 | 2R | 17094529..17094696 | 328..495 | 840 | 100 | Plus |
2R | 25286936 | 2R | 17094316..17094458 | 185..327 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:50:04 has no hits.
BS05487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:55 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8938-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:57 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8938-PC | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:08 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 197..952 | 11..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:08 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 197..952 | 11..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:08 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17094058..17094228 | 11..184 | 98 | <- | Plus |
2R | 17094316..17094458 | 185..327 | 100 | <- | Plus |
2R | 17094529..17094696 | 328..495 | 100 | <- | Plus |
2R | 17094765..17095038 | 496..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:08 Download gff for
BS05487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12981563..12981733 | 11..184 | 98 | <- | Plus |
arm_2R | 12981821..12981963 | 185..327 | 100 | <- | Plus |
arm_2R | 12982034..12982201 | 328..495 | 100 | <- | Plus |
arm_2R | 12982270..12982543 | 496..769 | 99 | | Plus |
BS05487.5prime Sequence
780 bp (762 high quality bases) assembled on 2005-12-02
> BS05487.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGG
GAGCACCACCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAG
GGTGCCGTCGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCC
CATCAAGCACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCG
AGCCCCTGCGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTG
CGCGTCACCCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGG
ACAGATGCCCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTT
CGATGGCTCGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCG
TGGGAGGATCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCG
TCTAAAAATTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGA
AGAAGTTGGTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAG
CTCGAGCAGACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCT
GACCTGGGCCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACA
TGGTCAAGCGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTG
GATGCCGTCAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCC
CGTCACCGAGGTCTAAAAGCTTTCTAGACC
BS05487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8938-PA | 750 | GstS1-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG8938-PB | 750 | GstS1-RB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG8938-PC | 750 | GstS1-RC | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstS1-RC | 1461 | CG8938-RC | 525..1274 | 17..766 | 3750 | 100 | Plus |
GstS1-RB | 1402 | CG8938-RB | 235..984 | 17..766 | 3750 | 100 | Plus |
GstS1-RA | 1764 | CG8938-RA | 200..949 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17094765..17095035 | 287..17 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 17094061..17094230 | 766..597 | 850 | 100 | Minus |
2R | 25286936 | 2R | 17094529..17094696 | 455..288 | 840 | 100 | Minus |
2R | 25286936 | 2R | 17094316..17094458 | 598..456 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:08:00 has no hits.
BS05487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:56 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8938-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:58 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8938-PC | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:27 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 197..952 | 14..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:52 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 197..952 | 14..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:52 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17094529..17094696 | 288..455 | 100 | <- | Minus |
2R | 17094058..17094228 | 599..772 | 98 | <- | Minus |
2R | 17094316..17094458 | 456..598 | 100 | <- | Minus |
2R | 17094765..17095038 | 14..287 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:27 Download gff for
BS05487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12982034..12982201 | 288..455 | 100 | <- | Minus |
arm_2R | 12981563..12981733 | 599..772 | 98 | <- | Minus |
arm_2R | 12981821..12981963 | 456..598 | 100 | <- | Minus |
arm_2R | 12982270..12982543 | 14..287 | 99 | | Minus |
BS05487.complete Sequence
782 bp (782 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635141
> BS05487.complete
GAAGTTATCAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGG
GAGCACCACCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAG
GGTGCCGTCGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCC
CATCAAGCACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCG
AGCCCCTGCGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTG
CGCGTCACCCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGG
ACAGATGCCCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTT
CGATGGCTCGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCG
TGGGAGGATCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCG
TCTAAAAATTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGA
AGAAGTTGGTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAG
CTCGAGCAGACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCT
GACCTGGGCCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACA
TGGTCAAGCGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTG
GATGCCGTCAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCC
CGTCACCGAGGTCTAAAAGCTTTCTAGACCAT
BS05487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstS1-RC | 750 | CG8938-PC | 1..750 | 17..766 | 3750 | 100 | Plus |
GstS1-RB | 750 | CG8938-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
GstS1-RA | 750 | CG8938-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstS1-RC | 1461 | CG8938-RC | 525..1274 | 17..766 | 3750 | 100 | Plus |
GstS1-RB | 1402 | CG8938-RB | 235..984 | 17..766 | 3750 | 100 | Plus |
GstS1-RA | 1764 | CG8938-RA | 200..949 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17094765..17095035 | 287..17 | 1355 | 100 | Minus |
2R | 25286936 | 2R | 17094061..17094230 | 766..597 | 850 | 100 | Minus |
2R | 25286936 | 2R | 17094529..17094696 | 455..288 | 840 | 100 | Minus |
2R | 25286936 | 2R | 17094316..17094458 | 598..456 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:44 has no hits.
BS05487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:05 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RC | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:01 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RC | 226..981 | 14..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:20 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 200..947 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:05 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RC | 226..981 | 14..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:58 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstS1-RA | 200..947 | 17..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:58 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17094316..17094458 | 456..598 | 100 | <- | Minus |
2R | 17094529..17094696 | 288..455 | 100 | <- | Minus |
2R | 17094063..17094228 | 599..764 | 100 | <- | Minus |
2R | 17094765..17095035 | 17..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:20 Download gff for
BS05487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12981568..12981733 | 599..764 | 100 | <- | Minus |
arm_2R | 12981821..12981963 | 456..598 | 100 | <- | Minus |
arm_2R | 12982034..12982201 | 288..455 | 100 | <- | Minus |
arm_2R | 12982270..12982540 | 17..287 | 100 | | Minus |
BS05487.pep Sequence
Translation from 16 to 765
> BS05487.pep
MADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY
TLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVL
EVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAV
VSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADV
YFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV*
BS05487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstS1-PC | 249 | CG8938-PC | 1..249 | 1..249 | 1306 | 100 | Plus |
GstS1-PB | 249 | CG8938-PB | 1..249 | 1..249 | 1306 | 100 | Plus |
GstS1-PA | 249 | CG8938-PA | 1..249 | 1..249 | 1306 | 100 | Plus |
GstS1-PD | 250 | CG8938-PD | 1..250 | 1..249 | 1273 | 98 | Plus |