Clone BS05487 Report

Search the DGRC for BS05487

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptGstS1-RA
Protein status:BS05487.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05487.3prime Sequence

780 bp (779 high quality bases) assembled on 2005-12-02

> BS05487.3prime
ATGGTCTAGAAAGCTTTTAGACCTCGGTGACGGGGCGCTTCTCGATCCAG
GCCTTGATCGGTTCCAAAGCGTTGACGGCATCCACGACTCCGCGCAGAGC
TGGGTAGGGTTCCAACAGATCGCGCTTGACCATGTAGTTCATGTAGTCGG
TGATGCCTGCGAAGTAGACGTCGGCCCAGGTCAGCTTGCCCAGAGCCAGG
TGACCATCGTTGTCCTTGACGGTCTGCTCGAGCTTCTCCAGGTAGAATGG
AATGACCTCCGCATTCAGGGTGACCAACTTCTTCTCTTTAATCTCGTCCT
CCGGCTCGTACGAGACGACTGCAATTTTTAGACGGAAGTCATTGATGGTG
TCAACGACAATGTCGATCTGCAGATCCTCCCACGGAGTAGCGCCGCACAG
GCCGACAGTCTTGGCCAGGAATCGAGCCATCGAAATGCTCTGGTGCACAC
GCTTGCCGTCCACCTCCAGCACGGGCATCTGTCCCATGGGCATGGTGGGC
TTCAGGGCTGGCCACTCGTCGCGGGTGACGCGCACATCCTCGTACTCCTG
GTTGCCGTAGGCGAACAGGTAGCGCAGGGGCTCGGCCAACGCCTTCACGT
TGAAGTAGAAGAGCGTGTAGCTGTGCTTGATGGGCTCGGCGGGCTCTGCT
GGTGGAGCGGCCTCTCCGCCCTCGACGGCACCCTCGGCTCCCTCGGCGGG
TGGTGGCGCCTCTCCCTCGGCTGGTGGTGCTCCCTCAGCTGGTGGTGCTT
GTGCTTCATCGGCCATGTCGACTGATAACT

BS05487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8938-PA 750 GstS1-RA 1..750 766..17 3750 100 Minus
CG8938-PB 750 GstS1-RB 1..750 766..17 3750 100 Minus
CG8938-PC 750 GstS1-RC 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-RC 1461 CG8938-RC 525..1274 766..17 3750 100 Minus
GstS1-RB 1402 CG8938-RB 235..984 766..17 3750 100 Minus
GstS1-RA 1764 CG8938-RA 200..949 766..17 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17094765..17095035 496..766 1355 100 Plus
2R 25286936 2R 17094061..17094230 17..186 850 100 Plus
2R 25286936 2R 17094529..17094696 328..495 840 100 Plus
2R 25286936 2R 17094316..17094458 185..327 715 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:50:04 has no hits.

BS05487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:55 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8938-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:57 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8938-PC 1..750 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:12:08 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 197..952 11..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:08 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 197..952 11..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:08 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17094058..17094228 11..184 98 <- Plus
2R 17094316..17094458 185..327 100 <- Plus
2R 17094529..17094696 328..495 100 <- Plus
2R 17094765..17095038 496..769 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:12:08 Download gff for BS05487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12981563..12981733 11..184 98 <- Plus
arm_2R 12981821..12981963 185..327 100 <- Plus
arm_2R 12982034..12982201 328..495 100 <- Plus
arm_2R 12982270..12982543 496..769 99   Plus

BS05487.5prime Sequence

780 bp (762 high quality bases) assembled on 2005-12-02

> BS05487.5prime
GAAGTTATCAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGG
GAGCACCACCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAG
GGTGCCGTCGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCC
CATCAAGCACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCG
AGCCCCTGCGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTG
CGCGTCACCCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGG
ACAGATGCCCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTT
CGATGGCTCGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCG
TGGGAGGATCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCG
TCTAAAAATTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGA
AGAAGTTGGTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAG
CTCGAGCAGACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCT
GACCTGGGCCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACA
TGGTCAAGCGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTG
GATGCCGTCAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCC
CGTCACCGAGGTCTAAAAGCTTTCTAGACC

BS05487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8938-PA 750 GstS1-RA 1..750 17..766 3750 100 Plus
CG8938-PB 750 GstS1-RB 1..750 17..766 3750 100 Plus
CG8938-PC 750 GstS1-RC 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-RC 1461 CG8938-RC 525..1274 17..766 3750 100 Plus
GstS1-RB 1402 CG8938-RB 235..984 17..766 3750 100 Plus
GstS1-RA 1764 CG8938-RA 200..949 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17094765..17095035 287..17 1355 100 Minus
2R 25286936 2R 17094061..17094230 766..597 850 100 Minus
2R 25286936 2R 17094529..17094696 455..288 840 100 Minus
2R 25286936 2R 17094316..17094458 598..456 715 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:08:00 has no hits.

BS05487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:56 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8938-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:41:58 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8938-PC 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:57:27 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 197..952 14..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:52 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 197..952 14..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:52 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17094529..17094696 288..455 100 <- Minus
2R 17094058..17094228 599..772 98 <- Minus
2R 17094316..17094458 456..598 100 <- Minus
2R 17094765..17095038 14..287 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:57:27 Download gff for BS05487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12982034..12982201 288..455 100 <- Minus
arm_2R 12981563..12981733 599..772 98 <- Minus
arm_2R 12981821..12981963 456..598 100 <- Minus
arm_2R 12982270..12982543 14..287 99   Minus

BS05487.complete Sequence

782 bp (782 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635141

> BS05487.complete
GAAGTTATCAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGG
GAGCACCACCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAG
GGTGCCGTCGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCC
CATCAAGCACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCG
AGCCCCTGCGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTG
CGCGTCACCCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGG
ACAGATGCCCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTT
CGATGGCTCGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCG
TGGGAGGATCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCG
TCTAAAAATTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGA
AGAAGTTGGTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAG
CTCGAGCAGACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCT
GACCTGGGCCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACA
TGGTCAAGCGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTG
GATGCCGTCAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCC
CGTCACCGAGGTCTAAAAGCTTTCTAGACCAT

BS05487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-RC 750 CG8938-PC 1..750 17..766 3750 100 Plus
GstS1-RB 750 CG8938-PB 1..750 17..766 3750 100 Plus
GstS1-RA 750 CG8938-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-RC 1461 CG8938-RC 525..1274 17..766 3750 100 Plus
GstS1-RB 1402 CG8938-RB 235..984 17..766 3750 100 Plus
GstS1-RA 1764 CG8938-RA 200..949 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17094765..17095035 287..17 1355 100 Minus
2R 25286936 2R 17094061..17094230 766..597 850 100 Minus
2R 25286936 2R 17094529..17094696 455..288 840 100 Minus
2R 25286936 2R 17094316..17094458 598..456 715 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:44 has no hits.

BS05487.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:05 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:01 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 226..981 14..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:20 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 200..947 17..764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:05 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RC 226..981 14..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:58 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
GstS1-RA 200..947 17..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:58 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17094316..17094458 456..598 100 <- Minus
2R 17094529..17094696 288..455 100 <- Minus
2R 17094063..17094228 599..764 100 <- Minus
2R 17094765..17095035 17..287 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:20 Download gff for BS05487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12981568..12981733 599..764 100 <- Minus
arm_2R 12981821..12981963 456..598 100 <- Minus
arm_2R 12982034..12982201 288..455 100 <- Minus
arm_2R 12982270..12982540 17..287 100   Minus

BS05487.pep Sequence

Translation from 16 to 765

> BS05487.pep
MADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY
TLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVL
EVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAV
VSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADV
YFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEV*

BS05487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
GstS1-PC 249 CG8938-PC 1..249 1..249 1306 100 Plus
GstS1-PB 249 CG8938-PB 1..249 1..249 1306 100 Plus
GstS1-PA 249 CG8938-PA 1..249 1..249 1306 100 Plus
GstS1-PD 250 CG8938-PD 1..250 1..249 1273 98 Plus