Clone BS05488 Report

Search the DGRC for BS05488

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMob4-RA
Protein status:BS05488.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05488.3prime Sequence

702 bp (701 high quality bases) assembled on 2005-12-02

> BS05488.3prime
ATGGTCTAGAAAGCTTCTAAGCCTCGCTTTCGCCAGGGGCCGCGTTTTCA
CCCACGTTGATGGGCACGATCAGATTCTCCTTCGACATCAGATTATATTT
TGTGACGAAATGCGTGAAACGGTGGCACAGATACGTCTCGGCCTCGAATT
CGTCGAAAATGCGACGATGGTGAAAGTAGGCGTGCGAGAAGATGCGATAC
ACCCGCCGACATACGGAGCCCAGCTTGGTTACCGACGACTCCTTGATGGA
CACCCTGCTAGGGAAGTACTTGTTGCTGTTTAGCAGACAGGCGGCACCGT
CCAGCGTGTGGCGTGTGTAGTCAATGGCCGGACATTCCTTGGGCGTCTTG
TGCGCGGCGCACAGGAATATCCACTGGTCAGTGGCTGTCATCTGGGTGCA
CGTCGACGGCGAGCACTCCTTCTGCAGCCGCACTGCCAGGCCGTTCAGCT
CCATGCAGAACTGGCGCAGGTGCTCGTACTTCCACACGCCCTCATCCTGG
GCTTCGGGCATGGTCAGTATGAGTTCCACGTTGCTCGGGTCGCGCTTAAT
CAGCTGCTGTATGTACTGCTGCACCGCCAGCGTGCTGTCCATCTCCTCCA
GGGGCTCGTCGGGCCAGCGACAGAAGTCCTTGGATTTTGTGCCTGGCCGG
TTCCTACGCAATATGGTCGAGCCGTCAGCCATCTTCATGTCGACTGATAA
CT

BS05488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3403-PA 672 CG3403-RA 1..672 688..17 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..938 690..13 3375 99.9 Minus
Mob4-RB 1426 CG3403-RB 261..950 690..13 3245 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 254..630 1885 100 Plus
2R 25286936 2R 6695590..6695834 13..257 1210 99.6 Plus
2R 25286936 2R 6696339..6696401 628..690 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:38:35 has no hits.

BS05488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:57 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:00 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..688 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:36 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..938 13..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:35 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..938 13..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:35 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6695590..6695831 13..254 99 <- Plus
2R 6695892..6696265 255..628 100 <- Plus
2R 6696340..6696401 629..690 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:36 Download gff for BS05488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583095..2583336 13..254 99 <- Plus
arm_2R 2583397..2583770 255..628 100 <- Plus
arm_2R 2583845..2583906 629..690 100   Plus

BS05488.5prime Sequence

702 bp (654 high quality bases) assembled on 2005-12-02

> BS05488.5prime
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTTAGAAGCTTTCTAGA
CC

BS05488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3403-PA 672 CG3403-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..938 15..692 3375 99.9 Plus
Mob4-RB 1426 CG3403-RB 261..950 15..692 3245 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 451..75 1885 100 Minus
2R 25286936 2R 6695590..6695834 692..448 1210 99.6 Minus
2R 25286936 2R 6696339..6696401 77..15 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:27:43 has no hits.

BS05488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:58 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:01 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:22 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..938 15..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:06 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..938 15..692 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:06 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6695590..6695831 451..692 99 <- Minus
2R 6695892..6696265 77..450 100 <- Minus
2R 6696340..6696401 15..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:22 Download gff for BS05488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583095..2583336 451..692 99 <- Minus
arm_2R 2583397..2583770 77..450 100 <- Minus
arm_2R 2583845..2583906 15..76 100   Minus

BS05488.complete Sequence

704 bp (704 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635142

> BS05488.complete
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTTAGAAGCTTTCTAGA
CCAT

BS05488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 672 CG3403-PA 1..672 17..688 3360 100 Plus
Mob4-RB 684 CG3403-PB 1..684 17..688 3205 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..938 15..692 3375 99.9 Plus
Mob4-RB 1426 CG3403-RB 261..950 15..692 3220 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 451..75 1885 100 Minus
2R 25286936 2R 6695590..6695834 692..448 1210 99.6 Minus
2R 25286936 2R 6696339..6696401 77..15 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:04:43 has no hits.

BS05488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:06 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:03 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 225..902 15..692 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:52 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 263..934 17..688 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:06 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 225..902 15..692 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:07 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 263..934 17..688 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:07 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6695594..6695831 451..688 100 <- Minus
2R 6695892..6696265 77..450 100 <- Minus
2R 6696340..6696399 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:52 Download gff for BS05488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583099..2583336 451..688 100 <- Minus
arm_2R 2583397..2583770 77..450 100 <- Minus
arm_2R 2583845..2583904 17..76 100   Minus

BS05488.pep Sequence

Translation from 16 to 687

> BS05488.pep
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEA*

BS05488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-PA 223 CG3403-PA 1..223 1..223 1198 100 Plus
Mob4-PB 227 CG3403-PB 1..227 1..223 1183 98.2 Plus
Mob3-PA 220 CG4946-PA 44..205 53..206 149 23.5 Plus