Clone Sequence Records
BS05488.3prime Sequence
702 bp (701 high quality bases) assembled on 2005-12-02
> BS05488.3prime
ATGGTCTAGAAAGCTTCTAAGCCTCGCTTTCGCCAGGGGCCGCGTTTTCA
CCCACGTTGATGGGCACGATCAGATTCTCCTTCGACATCAGATTATATTT
TGTGACGAAATGCGTGAAACGGTGGCACAGATACGTCTCGGCCTCGAATT
CGTCGAAAATGCGACGATGGTGAAAGTAGGCGTGCGAGAAGATGCGATAC
ACCCGCCGACATACGGAGCCCAGCTTGGTTACCGACGACTCCTTGATGGA
CACCCTGCTAGGGAAGTACTTGTTGCTGTTTAGCAGACAGGCGGCACCGT
CCAGCGTGTGGCGTGTGTAGTCAATGGCCGGACATTCCTTGGGCGTCTTG
TGCGCGGCGCACAGGAATATCCACTGGTCAGTGGCTGTCATCTGGGTGCA
CGTCGACGGCGAGCACTCCTTCTGCAGCCGCACTGCCAGGCCGTTCAGCT
CCATGCAGAACTGGCGCAGGTGCTCGTACTTCCACACGCCCTCATCCTGG
GCTTCGGGCATGGTCAGTATGAGTTCCACGTTGCTCGGGTCGCGCTTAAT
CAGCTGCTGTATGTACTGCTGCACCGCCAGCGTGCTGTCCATCTCCTCCA
GGGGCTCGTCGGGCCAGCGACAGAAGTCCTTGGATTTTGTGCCTGGCCGG
TTCCTACGCAATATGGTCGAGCCGTCAGCCATCTTCATGTCGACTGATAA
CT
BS05488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3403-PA | 672 | CG3403-RA | 1..672 | 688..17 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..938 | 690..13 | 3375 | 99.9 | Minus |
Mob4-RB | 1426 | CG3403-RB | 261..950 | 690..13 | 3245 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 254..630 | 1885 | 100 | Plus |
2R | 25286936 | 2R | 6695590..6695834 | 13..257 | 1210 | 99.6 | Plus |
2R | 25286936 | 2R | 6696339..6696401 | 628..690 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:38:35 has no hits.
BS05488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:57 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:00 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..688 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:36 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..938 | 13..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:35 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..938 | 13..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:35 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695590..6695831 | 13..254 | 99 | <- | Plus |
2R | 6695892..6696265 | 255..628 | 100 | <- | Plus |
2R | 6696340..6696401 | 629..690 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:36 Download gff for
BS05488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583095..2583336 | 13..254 | 99 | <- | Plus |
arm_2R | 2583397..2583770 | 255..628 | 100 | <- | Plus |
arm_2R | 2583845..2583906 | 629..690 | 100 | | Plus |
BS05488.5prime Sequence
702 bp (654 high quality bases) assembled on 2005-12-02
> BS05488.5prime
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTTAGAAGCTTTCTAGA
CC
BS05488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3403-PA | 672 | CG3403-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..938 | 15..692 | 3375 | 99.9 | Plus |
Mob4-RB | 1426 | CG3403-RB | 261..950 | 15..692 | 3245 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 451..75 | 1885 | 100 | Minus |
2R | 25286936 | 2R | 6695590..6695834 | 692..448 | 1210 | 99.6 | Minus |
2R | 25286936 | 2R | 6696339..6696401 | 77..15 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:27:43 has no hits.
BS05488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:58 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:01 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:38:22 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..938 | 15..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:06 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..938 | 15..692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:06 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695590..6695831 | 451..692 | 99 | <- | Minus |
2R | 6695892..6696265 | 77..450 | 100 | <- | Minus |
2R | 6696340..6696401 | 15..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:38:22 Download gff for
BS05488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583095..2583336 | 451..692 | 99 | <- | Minus |
arm_2R | 2583397..2583770 | 77..450 | 100 | <- | Minus |
arm_2R | 2583845..2583906 | 15..76 | 100 | | Minus |
BS05488.complete Sequence
704 bp (704 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635142
> BS05488.complete
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTTAGAAGCTTTCTAGA
CCAT
BS05488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 672 | CG3403-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Mob4-RB | 684 | CG3403-PB | 1..684 | 17..688 | 3205 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..938 | 15..692 | 3375 | 99.9 | Plus |
Mob4-RB | 1426 | CG3403-RB | 261..950 | 15..692 | 3220 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 451..75 | 1885 | 100 | Minus |
2R | 25286936 | 2R | 6695590..6695834 | 692..448 | 1210 | 99.6 | Minus |
2R | 25286936 | 2R | 6696339..6696401 | 77..15 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:04:43 has no hits.
BS05488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:55:06 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 1..672 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:31:03 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 225..902 | 15..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:52 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 263..934 | 17..688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:55:06 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 225..902 | 15..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:07 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 263..934 | 17..688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:07 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695594..6695831 | 451..688 | 100 | <- | Minus |
2R | 6695892..6696265 | 77..450 | 100 | <- | Minus |
2R | 6696340..6696399 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:52 Download gff for
BS05488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583099..2583336 | 451..688 | 100 | <- | Minus |
arm_2R | 2583397..2583770 | 77..450 | 100 | <- | Minus |
arm_2R | 2583845..2583904 | 17..76 | 100 | | Minus |
BS05488.pep Sequence
Translation from 16 to 687
> BS05488.pep
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEA*
BS05488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-PA | 223 | CG3403-PA | 1..223 | 1..223 | 1198 | 100 | Plus |
Mob4-PB | 227 | CG3403-PB | 1..227 | 1..223 | 1183 | 98.2 | Plus |
Mob3-PA | 220 | CG4946-PA | 44..205 | 53..206 | 149 | 23.5 | Plus |