Clone Sequence Records
BS05489.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-02
> BS05489.5prime
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCTAAAAGCTTTCTAGACC
BS05489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2207-PF | 552 | Df31-RF | 1..552 | 17..568 | 2760 | 100 | Plus |
CG2207-PA | 552 | Df31-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG2207-PB | 552 | Df31-RB | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..684 | 17..568 | 2760 | 100 | Plus |
Df31-RA | 1532 | CG2207-RA | 241..792 | 17..568 | 2760 | 100 | Plus |
Df31-RF | 2083 | CG2207-RF | 241..792 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 410..43 | 1840 | 100 | Minus |
2L | 23513712 | 2L | 21627600..21627761 | 568..407 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:51:02 has no hits.
BS05489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:00 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PF | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:04 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PB | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:52 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..792 | 12..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:51 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..792 | 12..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:51 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627600..21627757 | 411..568 | 100 | <- | Minus |
2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
2L | 21629667..21629697 | 12..42 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:52 Download gff for
BS05489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21627600..21627757 | 411..568 | 100 | <- | Minus |
arm_2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
arm_2L | 21629667..21629697 | 12..42 | 93 | | Minus |
BS05489.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-02
> BS05489.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCCACTTCGCTAGCCTCGGCCCCATTC
TGAACCTCATCCTTTGTGCTGGCCTCATCAAGCTTAGCCTTTTTCTCCGG
CGTGGCGACGGCCTCATCTGCCTTGGCTGCAGCCTCATCCACCTTCCGCT
TTACAGCCTCAATGGCGGGAGCATCTGTTGAGTCACCGTTGGTGACCTCC
TCGGAGCCATTCTCGACAGCAGGTAGAACAGCTTCGCTGCTCTCTTTTTT
GGTGTCCTCCCCATCGGCAGCGGAATCCTCTTTTTTATCCTCGTCCTTCT
TCTCATCCTTATCGGCGGCAAAAGAAACAGTGGGCTCAGACGCCTTTTCA
CCATCGACTGCGTCGGTGGGCTCGGTCGCGCTGCTGTCGGCGGCTCCGTT
CTCCTTGGCTACGCTCTCCTCTTCGGCGCCACCGTTTTCTGTGATGCTCG
CCTTCTCAGCTGCTACCTCCTCGGCGGCAACTGCATCTTTCTTCACAGCA
TCAACTTCCTCAGCTGCGACCTTCTCGACAACAGGGGTCTCATTCTTTTG
CTCAGCCACATCAGCCATGTCGACTGATAACT
BS05489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2207-PF | 552 | Df31-RF | 1..552 | 568..17 | 2760 | 100 | Minus |
CG2207-PA | 552 | Df31-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG2207-PB | 552 | Df31-RB | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..684 | 568..17 | 2760 | 100 | Minus |
Df31-RA | 1532 | CG2207-RA | 241..792 | 568..17 | 2760 | 100 | Minus |
Df31-RF | 2083 | CG2207-RF | 241..792 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 175..542 | 1840 | 100 | Plus |
2L | 23513712 | 2L | 21627600..21627761 | 17..178 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:49:26 has no hits.
BS05489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:59 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PF | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:03 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PB | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:13 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..792 | 17..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:35 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..792 | 17..573 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:35 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627842..21628209 | 175..542 | 100 | <- | Plus |
2L | 21629667..21629697 | 543..573 | 93 | | Plus |
2L | 21627600..21627757 | 17..174 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:13 Download gff for
BS05489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21627600..21627757 | 17..174 | 100 | <- | Plus |
arm_2L | 21627842..21628209 | 175..542 | 100 | <- | Plus |
arm_2L | 21629667..21629697 | 543..573 | 93 | | Plus |
BS05489.complete Sequence
584 bp (584 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635143
> BS05489.complete
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCTAAAAGCTTTCTAGACCAT
BS05489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 552 | CG2207-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
Df31-RA | 552 | CG2207-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Df31-RF | 552 | CG2207-PF | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..684 | 17..568 | 2760 | 100 | Plus |
Df31-RA | 1532 | CG2207-RA | 241..792 | 17..568 | 2760 | 100 | Plus |
Df31-RF | 2083 | CG2207-RF | 241..792 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 410..43 | 1840 | 100 | Minus |
2L | 23513712 | 2L | 21627600..21627761 | 568..407 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:29 has no hits.
BS05489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:42 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RB | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:38 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 232..788 | 12..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:07 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 241..790 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:42 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RB | 124..680 | 12..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:26 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 241..790 | 17..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:26 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627602..21627757 | 411..566 | 100 | <- | Minus |
2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
2L | 21629667..21629692 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:07 Download gff for
BS05489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21627602..21627757 | 411..566 | 100 | <- | Minus |
arm_2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
arm_2L | 21629667..21629692 | 17..42 | 100 | | Minus |
BS05489.pep Sequence
Translation from 16 to 567
> BS05489.pep
MADVAEQKNETPVVEKVAAEEVDAVKKDAVAAEEVAAEKASITENGGAEE
ESVAKENGAADSSATEPTDAVDGEKASEPTVSFAADKDEKKDEDKKEDSA
ADGEDTKKESSEAVLPAVENGSEEVTNGDSTDAPAIEAVKRKVDEAAAKA
DEAVATPEKKAKLDEASTKDEVQNGAEASEVAA*
BS05489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-PB | 183 | CG2207-PB | 1..183 | 1..183 | 886 | 100 | Plus |
Df31-PA | 183 | CG2207-PA | 1..183 | 1..183 | 886 | 100 | Plus |
Df31-PF | 183 | CG2207-PF | 1..183 | 1..183 | 886 | 100 | Plus |