Clone BS05489 Report

Search the DGRC for BS05489

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptDf31-RA
Protein status:BS05489.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05489.5prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-02

> BS05489.5prime
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCTAAAAGCTTTCTAGACC

BS05489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2207-PF 552 Df31-RF 1..552 17..568 2760 100 Plus
CG2207-PA 552 Df31-RA 1..552 17..568 2760 100 Plus
CG2207-PB 552 Df31-RB 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..684 17..568 2760 100 Plus
Df31-RA 1532 CG2207-RA 241..792 17..568 2760 100 Plus
Df31-RF 2083 CG2207-RF 241..792 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 410..43 1840 100 Minus
2L 23513712 2L 21627600..21627761 568..407 810 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:51:02 has no hits.

BS05489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:00 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PF 1..552 17..568 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:04 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PB 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:52 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..792 12..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:51 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..792 12..568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:51 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21627600..21627757 411..568 100 <- Minus
2L 21627842..21628209 43..410 100 <- Minus
2L 21629667..21629697 12..42 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:52 Download gff for BS05489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21627600..21627757 411..568 100 <- Minus
arm_2L 21627842..21628209 43..410 100 <- Minus
arm_2L 21629667..21629697 12..42 93   Minus

BS05489.3prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-02

> BS05489.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCCACTTCGCTAGCCTCGGCCCCATTC
TGAACCTCATCCTTTGTGCTGGCCTCATCAAGCTTAGCCTTTTTCTCCGG
CGTGGCGACGGCCTCATCTGCCTTGGCTGCAGCCTCATCCACCTTCCGCT
TTACAGCCTCAATGGCGGGAGCATCTGTTGAGTCACCGTTGGTGACCTCC
TCGGAGCCATTCTCGACAGCAGGTAGAACAGCTTCGCTGCTCTCTTTTTT
GGTGTCCTCCCCATCGGCAGCGGAATCCTCTTTTTTATCCTCGTCCTTCT
TCTCATCCTTATCGGCGGCAAAAGAAACAGTGGGCTCAGACGCCTTTTCA
CCATCGACTGCGTCGGTGGGCTCGGTCGCGCTGCTGTCGGCGGCTCCGTT
CTCCTTGGCTACGCTCTCCTCTTCGGCGCCACCGTTTTCTGTGATGCTCG
CCTTCTCAGCTGCTACCTCCTCGGCGGCAACTGCATCTTTCTTCACAGCA
TCAACTTCCTCAGCTGCGACCTTCTCGACAACAGGGGTCTCATTCTTTTG
CTCAGCCACATCAGCCATGTCGACTGATAACT

BS05489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2207-PF 552 Df31-RF 1..552 568..17 2760 100 Minus
CG2207-PA 552 Df31-RA 1..552 568..17 2760 100 Minus
CG2207-PB 552 Df31-RB 1..552 568..17 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..684 568..17 2760 100 Minus
Df31-RA 1532 CG2207-RA 241..792 568..17 2760 100 Minus
Df31-RF 2083 CG2207-RF 241..792 568..17 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 175..542 1840 100 Plus
2L 23513712 2L 21627600..21627761 17..178 810 100 Plus
Blast to na_te.dros performed on 2015-02-03 13:49:26 has no hits.

BS05489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:12:59 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PF 1..552 17..568 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:03 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PB 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:04:13 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..792 17..573 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:52:35 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..792 17..573 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:52:35 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21627842..21628209 175..542 100 <- Plus
2L 21629667..21629697 543..573 93   Plus
2L 21627600..21627757 17..174 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:04:13 Download gff for BS05489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21627600..21627757 17..174 100 <- Plus
arm_2L 21627842..21628209 175..542 100 <- Plus
arm_2L 21629667..21629697 543..573 93   Plus

BS05489.complete Sequence

584 bp (584 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635143

> BS05489.complete
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCTAAAAGCTTTCTAGACCAT

BS05489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 552 CG2207-PB 1..552 17..568 2760 100 Plus
Df31-RA 552 CG2207-PA 1..552 17..568 2760 100 Plus
Df31-RF 552 CG2207-PF 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..684 17..568 2760 100 Plus
Df31-RA 1532 CG2207-RA 241..792 17..568 2760 100 Plus
Df31-RF 2083 CG2207-RF 241..792 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 410..43 1840 100 Minus
2L 23513712 2L 21627600..21627761 568..407 810 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:43:29 has no hits.

BS05489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:42 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RB 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:38 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 232..788 12..568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:07 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 241..790 17..566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:42 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RB 124..680 12..568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:26 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 241..790 17..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:26 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21627602..21627757 411..566 100 <- Minus
2L 21627842..21628209 43..410 100 <- Minus
2L 21629667..21629692 17..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:07 Download gff for BS05489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21627602..21627757 411..566 100 <- Minus
arm_2L 21627842..21628209 43..410 100 <- Minus
arm_2L 21629667..21629692 17..42 100   Minus

BS05489.pep Sequence

Translation from 16 to 567

> BS05489.pep
MADVAEQKNETPVVEKVAAEEVDAVKKDAVAAEEVAAEKASITENGGAEE
ESVAKENGAADSSATEPTDAVDGEKASEPTVSFAADKDEKKDEDKKEDSA
ADGEDTKKESSEAVLPAVENGSEEVTNGDSTDAPAIEAVKRKVDEAAAKA
DEAVATPEKKAKLDEASTKDEVQNGAEASEVAA*

BS05489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-PB 183 CG2207-PB 1..183 1..183 886 100 Plus
Df31-PA 183 CG2207-PA 1..183 1..183 886 100 Plus
Df31-PF 183 CG2207-PF 1..183 1..183 886 100 Plus