Clone Sequence Records
BS05490.3prime Sequence
924 bp (837 high quality bases) assembled on 2005-12-02
> BS05490.3prime
ATGGTCTAGAAAGCTTTTAGCTTTCTTCCACCAGGGAGAAGCTGAGGCGT
CTCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTG
ACAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCT
GGCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTG
TCCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGA
CCTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGA
TCTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGC
TGCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGG
GGAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCC
GCGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCG
GGGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTG
GCTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCT
GCCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGC
AGCACCTTGCGGTTGCTCTCGAGGATGGCATCGATCATGCGCTCCAGGGT
CACATCGCCCATCTGGCTGGAACTGAGCGTATTCTGTTCGCCGGTCGGAG
GTGCTGGATGCGGATGCGGATGTGGTAGTGGCTTCTGCTCCAGGTAACGC
GGCTTCTCGAAGTAGCTGTCCGGGATGCCCATGCCGCGCAGGGCGATCAG
GGAGCCAGGAATGATGGCGGCATTGGGCGAGTACTCCGCCTCGAAGGTGG
GCAGTGTGCAGGCAAACTTCAAGG
BS05490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 314..1218 | 921..17 | 4500 | 99.8 | Minus |
CG15646-PA | 1233 | CG15646-RA | 742..1049 | 550..243 | 1415 | 98.3 | Minus |
CG15646-PA | 1233 | CG15646-RA | 514..752 | 772..534 | 1095 | 98.3 | Minus |
CG15646-PA | 1233 | CG15646-RA | 359..524 | 921..756 | 755 | 98.1 | Minus |
CG15646-PA | 1233 | CG15646-RA | 1071..1124 | 230..177 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 685..1589 | 921..17 | 4510 | 99.9 | Minus |
CG12708-RA | 1586 | CG12708-RA | 569..1473 | 921..17 | 4510 | 99.9 | Minus |
CG15646-RB | 1697 | CG15646-RB | 646..1411 | 921..177 | 3190 | 95 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676720..15677624 | 921..17 | 4510 | 99.9 | Minus |
X | 23542271 | X | 15668171..15668936 | 177..921 | 3075 | 94.6 | Plus |
Blast to na_te.dros performed 2015-02-11 11:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 647..548 | 148 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 681..551 | 146 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 647..548 | 141 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 647..562 | 139 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 648..582 | 134 | 68.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 667..566 | 134 | 66.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 690..582 | 120 | 60.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 667..607 | 120 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 638..537 | 113 | 59.2 | Minus |
BS05490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:01 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 311..1218 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:05 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 311..1218 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:43 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 541..1452 | 12..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:05 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 566..1477 | 12..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:05 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676717..15677628 | 12..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:43 Download gff for
BS05490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570750..15571661 | 12..924 | 99 | | Minus |
BS05490.5prime Sequence
905 bp (800 high quality bases) assembled on 2005-11-29
> BS05490.5prime
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCANGATGCCAAGCGGCATTCCCTGCA
GCTGC
BS05490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 1..889 | 17..905 | 4426 | 99.8 | Plus |
CG15646-PA | 1233 | CG15646-RA | 127..524 | 98..495 | 1790 | 97.9 | Plus |
CG15646-PA | 1233 | CG15646-RA | 514..752 | 479..717 | 1095 | 98.3 | Plus |
CG15646-PA | 1233 | CG15646-RA | 742..946 | 701..905 | 931 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1260 | 17..905 | 4434 | 99.9 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1144 | 17..905 | 4434 | 99.9 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1233 | 98..905 | 3709 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677295 | 17..905 | 4434 | 99.9 | Plus |
X | 23542271 | X | 15668349..15669168 | 905..98 | 3659 | 97 | Minus |
Blast to na_te.dros performed 2015-02-12 05:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 604..703 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 570..700 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 604..703 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 604..689 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 603..669 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 584..685 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 561..669 | 120 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 584..644 | 120 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 613..714 | 113 | 59.2 | Plus |
BS05490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:02 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:07 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:30 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 226..1119 | 10..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:00 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 251..1144 | 10..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:00 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676402..15677295 | 10..905 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:30 Download gff for
BS05490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570435..15571328 | 10..905 | 99 | | Plus |
BS05490.complete Sequence
1250 bp (1250 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635144
> BS05490.complete
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCACCACAAAGA
TCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGCTTGCAGCGGCCAGG
TCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGCCACATCAGTCCGGA
CAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGAGGAGGAGCACTGCC
AGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGCTGGAGGATGCCTGT
CAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGAGACGCCACGAAGAG
ACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCTAAAAGCTTTCTAGACCAT
BS05490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1218 | CG12708-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
CG12708-RA | 1218 | CG12708-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
CG15646-RB | 1233 | CG15646-PB | 127..1124 | 98..1074 | 4160 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1589 | 17..1234 | 6090 | 100 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1473 | 17..1234 | 6090 | 100 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1411 | 98..1074 | 4160 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677624 | 17..1234 | 6090 | 100 | Plus |
X | 23542271 | X | 15668171..15669168 | 1074..98 | 4160 | 95.4 | Minus |
Blast to na_te.dros performed 2014-11-27 15:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 604..703 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 570..700 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 604..703 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 604..689 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 603..669 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 584..685 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 561..669 | 120 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 613..714 | 113 | 59.2 | Plus |
BS05490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:43 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:40 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 245..1471 | 10..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:57 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 231..1446 | 17..1232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:44 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 245..1471 | 10..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:41 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 256..1471 | 17..1232 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:41 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676407..15677622 | 17..1232 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:57 Download gff for
BS05490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570440..15571655 | 17..1232 | 100 | | Plus |
BS05490.pep Sequence
Translation from 16 to 1233
> BS05490.pep
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEES*
BS05490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PB | 405 | CG12708-PB | 1..405 | 1..405 | 2099 | 100 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..405 | 1..405 | 2099 | 100 | Plus |
CG15646-PB | 410 | CG15646-PB | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG15646-PA | 410 | CG15646-PA | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG12496-PA | 353 | CG12496-PA | 1..259 | 1..253 | 196 | 29.8 | Plus |