Clone BS05490 Report

Search the DGRC for BS05490

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG12708-RA
Protein status:BS05490.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05490.3prime Sequence

924 bp (837 high quality bases) assembled on 2005-12-02

> BS05490.3prime
ATGGTCTAGAAAGCTTTTAGCTTTCTTCCACCAGGGAGAAGCTGAGGCGT
CTCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTG
ACAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCT
GGCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTG
TCCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGA
CCTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGA
TCTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGC
TGCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGG
GGAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCC
GCGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCG
GGGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTG
GCTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCT
GCCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGC
AGCACCTTGCGGTTGCTCTCGAGGATGGCATCGATCATGCGCTCCAGGGT
CACATCGCCCATCTGGCTGGAACTGAGCGTATTCTGTTCGCCGGTCGGAG
GTGCTGGATGCGGATGCGGATGTGGTAGTGGCTTCTGCTCCAGGTAACGC
GGCTTCTCGAAGTAGCTGTCCGGGATGCCCATGCCGCGCAGGGCGATCAG
GGAGCCAGGAATGATGGCGGCATTGGGCGAGTACTCCGCCTCGAAGGTGG
GCAGTGTGCAGGCAAACTTCAAGG

BS05490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 314..1218 921..17 4500 99.8 Minus
CG15646-PA 1233 CG15646-RA 742..1049 550..243 1415 98.3 Minus
CG15646-PA 1233 CG15646-RA 514..752 772..534 1095 98.3 Minus
CG15646-PA 1233 CG15646-RA 359..524 921..756 755 98.1 Minus
CG15646-PA 1233 CG15646-RA 1071..1124 230..177 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 685..1589 921..17 4510 99.9 Minus
CG12708-RA 1586 CG12708-RA 569..1473 921..17 4510 99.9 Minus
CG15646-RB 1697 CG15646-RB 646..1411 921..177 3190 95 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676720..15677624 921..17 4510 99.9 Minus
X 23542271 X 15668171..15668936 177..921 3075 94.6 Plus
Blast to na_te.dros performed 2015-02-11 11:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 647..548 148 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 681..551 146 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 647..548 141 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 647..562 139 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 648..582 134 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 667..566 134 66.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 690..582 120 60.6 Minus
roo 9092 roo DM_ROO 9092bp 1098..1160 667..607 120 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 638..537 113 59.2 Minus

BS05490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:01 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 311..1218 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:05 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 311..1218 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:43 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 541..1452 12..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:05 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 566..1477 12..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:05 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15676717..15677628 12..924 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:43 Download gff for BS05490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570750..15571661 12..924 99   Minus

BS05490.5prime Sequence

905 bp (800 high quality bases) assembled on 2005-11-29

> BS05490.5prime
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCANGATGCCAAGCGGCATTCCCTGCA
GCTGC

BS05490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 1..889 17..905 4426 99.8 Plus
CG15646-PA 1233 CG15646-RA 127..524 98..495 1790 97.9 Plus
CG15646-PA 1233 CG15646-RA 514..752 479..717 1095 98.3 Plus
CG15646-PA 1233 CG15646-RA 742..946 701..905 931 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1260 17..905 4434 99.9 Plus
CG12708-RA 1586 CG12708-RA 256..1144 17..905 4434 99.9 Plus
CG15646-RB 1697 CG15646-RB 414..1233 98..905 3709 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677295 17..905 4434 99.9 Plus
X 23542271 X 15668349..15669168 905..98 3659 97 Minus
Blast to na_te.dros performed 2015-02-12 05:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 604..703 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 570..700 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 604..703 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 604..689 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 603..669 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 584..685 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 561..669 120 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1098..1160 584..644 120 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 613..714 113 59.2 Plus

BS05490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:02 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:07 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:30 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 226..1119 10..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:00 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 251..1144 10..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:00 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15676402..15677295 10..905 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:30 Download gff for BS05490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570435..15571328 10..905 99   Plus

BS05490.complete Sequence

1250 bp (1250 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635144

> BS05490.complete
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCACCACAAAGA
TCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGCTTGCAGCGGCCAGG
TCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGCCACATCAGTCCGGA
CAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGAGGAGGAGCACTGCC
AGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGCTGGAGGATGCCTGT
CAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGAGACGCCACGAAGAG
ACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCTAAAAGCTTTCTAGACCAT

BS05490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1218 CG12708-PB 1..1218 17..1234 6090 100 Plus
CG12708-RA 1218 CG12708-PA 1..1218 17..1234 6090 100 Plus
CG15646-RB 1233 CG15646-PB 127..1124 98..1074 4160 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1589 17..1234 6090 100 Plus
CG12708-RA 1586 CG12708-RA 256..1473 17..1234 6090 100 Plus
CG15646-RB 1697 CG15646-RB 414..1411 98..1074 4160 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677624 17..1234 6090 100 Plus
X 23542271 X 15668171..15669168 1074..98 4160 95.4 Minus
Blast to na_te.dros performed 2014-11-27 15:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 604..703 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 570..700 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 604..703 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 604..689 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 603..669 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 584..685 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 561..669 120 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 613..714 113 59.2 Plus

BS05490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:43 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 1..1218 17..1234 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:40 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 245..1471 10..1239 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:57 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 231..1446 17..1232 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:44 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 245..1471 10..1239 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:41 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 256..1471 17..1232 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:41 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
X 15676407..15677622 17..1232 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:57 Download gff for BS05490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570440..15571655 17..1232 100   Plus

BS05490.pep Sequence

Translation from 16 to 1233

> BS05490.pep
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEES*

BS05490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PB 405 CG12708-PB 1..405 1..405 2099 100 Plus
CG12708-PA 405 CG12708-PA 1..405 1..405 2099 100 Plus
CG15646-PB 410 CG15646-PB 1..405 1..404 1670 81.3 Plus
CG15646-PA 410 CG15646-PA 1..405 1..404 1670 81.3 Plus
CG12496-PA 353 CG12496-PA 1..259 1..253 196 29.8 Plus