Clone Sequence Records
BS05491.3prime Sequence
762 bp (761 high quality bases) assembled on 2005-12-02
> BS05491.3prime
ATGGTCTAGAAAGCTTCTACAGGTGCTTGCCGAACCACTTGTGGTCCACG
GGCGAGAGCCAACGGTGGCAGCCGCTGAGGTTGTTCTGGATCACGTACTT
CATGGTAAAGGGGTTCTCATTCTGGCGGGTCTGTTCCTCCTCGGCGACGC
GCTGTTCGTCGAGCATCTCCTGGGAAACGACGGTGGCCTGGAAGGGCAGC
TGGTTGGCCACCTGCTGCAGGAACTGCTTGACCTCAACGAACTCGCACTT
GCCGGCTATCTCGACAATGACGCGACCGGCCTTGATGGGGGTCACGTAGT
GGTCGATGGCTCCCTTTCCGCCGCCCATCCGTTGGCCCTGGCCCTTCTTA
GTGATCGGCTGCCAGGGTGCGGGAACGCGCCATGTGGCGAACATAGTGTT
GACGTTCATCTTGCGTCCGATGGTCAAACGCATCATTTCGTAGTGGCCCC
AGCGCAGGCGCCCTCCGCCAGTGGCCACGATTGCGTACTGCTTATGGAGC
AGCGTGTTGTGCACCATCTCCGGACCGCGCATGTATCGCAGGCGCTTCTG
CATCTTTGGCGGACGGATGTTTGGCGGCAGCTGGGGCTGGCGCTCAATGA
CCCTCAGCTTGGGTCTCTCCGGCTGCTCCACATTCTGGTATTTAATAGGC
GGAGCGAAATACTTAAGACCGGCTGTGTTGACAATTGCCATGTTGCCCGA
CGCAAGGCTTTGCTTAAAGAGCTGGGAGACTAACTTTAATGAGAGCATGT
CGACTGATAACT
BS05491.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3109-PA | 732 | mRpL16-RA | 1..732 | 748..17 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..824 | 749..16 | 3670 | 100 | Minus |
mRpL16-RA | 869 | CG3109-RA | 91..824 | 749..16 | 3670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891230 | 633..16 | 3090 | 100 | Minus |
X | 23542271 | X | 1890478..1890543 | 699..634 | 330 | 100 | Minus |
X | 23542271 | X | 1890346..1890395 | 749..700 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 13:05:23 has no hits.
BS05491.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:03 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:08 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:24 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..824 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:38 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..824 | 16..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:38 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890342..1890395 | 700..753 | 96 | -> | Minus |
X | 1890478..1890543 | 634..699 | 100 | -> | Minus |
X | 1890613..1891230 | 16..633 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:24 Download gff for
BS05491.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784375..1784428 | 700..753 | 96 | -> | Minus |
arm_X | 1784511..1784576 | 634..699 | 100 | -> | Minus |
arm_X | 1784646..1785263 | 16..633 | 100 | | Minus |
BS05491.5prime Sequence
762 bp (761 high quality bases) assembled on 2005-11-29
> BS05491.5prime
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGTAGAA
GCTTTCTAGACC
BS05491.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3109-PA | 732 | mRpL16-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..824 | 16..749 | 3670 | 100 | Plus |
mRpL16-RA | 869 | CG3109-RA | 91..824 | 16..749 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891230 | 132..749 | 3090 | 100 | Plus |
X | 23542271 | X | 1890478..1890543 | 66..131 | 330 | 100 | Plus |
X | 23542271 | X | 1890346..1890395 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:06:07 has no hits.
BS05491.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:04 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:09 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:26 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..824 | 12..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:31 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..824 | 12..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:31 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890342..1890395 | 12..65 | 96 | -> | Plus |
X | 1890478..1890543 | 66..131 | 100 | -> | Plus |
X | 1890613..1891230 | 132..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:26 Download gff for
BS05491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784511..1784576 | 66..131 | 100 | -> | Plus |
arm_X | 1784375..1784428 | 12..65 | 96 | -> | Plus |
arm_X | 1784646..1785263 | 132..749 | 100 | | Plus |
BS05491.complete Sequence
764 bp (764 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635145
> BS05491.complete
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGTAGAA
GCTTTCTAGACCAT
BS05491.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 732 | CG3109-PB | 1..732 | 17..748 | 3660 | 100 | Plus |
mRpL16-RA | 732 | CG3109-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..824 | 16..749 | 3670 | 100 | Plus |
mRpL16-RA | 869 | CG3109-RA | 91..824 | 16..749 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891230 | 132..749 | 3090 | 100 | Plus |
X | 23542271 | X | 1890478..1890543 | 66..131 | 330 | 100 | Plus |
X | 23542271 | X | 1890346..1890395 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:14 has no hits.
BS05491.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:46 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:41 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 44..781 | 12..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:13 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 92..823 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:46 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 44..781 | 12..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:36 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 92..823 | 17..748 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:36 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890347..1890395 | 17..65 | 100 | -> | Plus |
X | 1890478..1890543 | 66..131 | 100 | -> | Plus |
X | 1890613..1891229 | 132..748 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:13 Download gff for
BS05491.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784380..1784428 | 17..65 | 100 | -> | Plus |
arm_X | 1784511..1784576 | 66..131 | 100 | -> | Plus |
arm_X | 1784646..1785262 | 132..748 | 100 | | Plus |
BS05491.pep Sequence
Translation from 16 to 747
> BS05491.pep
MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV
IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW
GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH
YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR
VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHL*
BS05491.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-PB | 243 | CG3109-PB | 1..243 | 1..243 | 1292 | 100 | Plus |
mRpL16-PA | 243 | CG3109-PA | 1..243 | 1..243 | 1292 | 100 | Plus |