Clone BS05491 Report

Search the DGRC for BS05491

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL16-RA
Protein status:BS05491.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05491.3prime Sequence

762 bp (761 high quality bases) assembled on 2005-12-02

> BS05491.3prime
ATGGTCTAGAAAGCTTCTACAGGTGCTTGCCGAACCACTTGTGGTCCACG
GGCGAGAGCCAACGGTGGCAGCCGCTGAGGTTGTTCTGGATCACGTACTT
CATGGTAAAGGGGTTCTCATTCTGGCGGGTCTGTTCCTCCTCGGCGACGC
GCTGTTCGTCGAGCATCTCCTGGGAAACGACGGTGGCCTGGAAGGGCAGC
TGGTTGGCCACCTGCTGCAGGAACTGCTTGACCTCAACGAACTCGCACTT
GCCGGCTATCTCGACAATGACGCGACCGGCCTTGATGGGGGTCACGTAGT
GGTCGATGGCTCCCTTTCCGCCGCCCATCCGTTGGCCCTGGCCCTTCTTA
GTGATCGGCTGCCAGGGTGCGGGAACGCGCCATGTGGCGAACATAGTGTT
GACGTTCATCTTGCGTCCGATGGTCAAACGCATCATTTCGTAGTGGCCCC
AGCGCAGGCGCCCTCCGCCAGTGGCCACGATTGCGTACTGCTTATGGAGC
AGCGTGTTGTGCACCATCTCCGGACCGCGCATGTATCGCAGGCGCTTCTG
CATCTTTGGCGGACGGATGTTTGGCGGCAGCTGGGGCTGGCGCTCAATGA
CCCTCAGCTTGGGTCTCTCCGGCTGCTCCACATTCTGGTATTTAATAGGC
GGAGCGAAATACTTAAGACCGGCTGTGTTGACAATTGCCATGTTGCCCGA
CGCAAGGCTTTGCTTAAAGAGCTGGGAGACTAACTTTAATGAGAGCATGT
CGACTGATAACT

BS05491.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..732 748..17 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..824 749..16 3670 100 Minus
mRpL16-RA 869 CG3109-RA 91..824 749..16 3670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891230 633..16 3090 100 Minus
X 23542271 X 1890478..1890543 699..634 330 100 Minus
X 23542271 X 1890346..1890395 749..700 250 100 Minus
Blast to na_te.dros performed on 2015-02-06 13:05:23 has no hits.

BS05491.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:03 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..748 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:08 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..748 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:49:24 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..824 16..753 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:38 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..824 16..753 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:38 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1890342..1890395 700..753 96 -> Minus
X 1890478..1890543 634..699 100 -> Minus
X 1890613..1891230 16..633 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:49:24 Download gff for BS05491.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784375..1784428 700..753 96 -> Minus
arm_X 1784511..1784576 634..699 100 -> Minus
arm_X 1784646..1785263 16..633 100   Minus

BS05491.5prime Sequence

762 bp (761 high quality bases) assembled on 2005-11-29

> BS05491.5prime
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGTAGAA
GCTTTCTAGACC

BS05491.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..824 16..749 3670 100 Plus
mRpL16-RA 869 CG3109-RA 91..824 16..749 3670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891230 132..749 3090 100 Plus
X 23542271 X 1890478..1890543 66..131 330 100 Plus
X 23542271 X 1890346..1890395 16..65 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:06:07 has no hits.

BS05491.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:04 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:09 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:26 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..824 12..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:31 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..824 12..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:31 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1890342..1890395 12..65 96 -> Plus
X 1890478..1890543 66..131 100 -> Plus
X 1890613..1891230 132..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:26 Download gff for BS05491.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784511..1784576 66..131 100 -> Plus
arm_X 1784375..1784428 12..65 96 -> Plus
arm_X 1784646..1785263 132..749 100   Plus

BS05491.complete Sequence

764 bp (764 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635145

> BS05491.complete
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGTAGAA
GCTTTCTAGACCAT

BS05491.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 732 CG3109-PB 1..732 17..748 3660 100 Plus
mRpL16-RA 732 CG3109-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..824 16..749 3670 100 Plus
mRpL16-RA 869 CG3109-RA 91..824 16..749 3670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891230 132..749 3090 100 Plus
X 23542271 X 1890478..1890543 66..131 330 100 Plus
X 23542271 X 1890346..1890395 16..65 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:14 has no hits.

BS05491.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:46 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:41 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 44..781 12..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:13 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 92..823 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:46 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 44..781 12..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:36 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 92..823 17..748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:36 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
X 1890347..1890395 17..65 100 -> Plus
X 1890478..1890543 66..131 100 -> Plus
X 1890613..1891229 132..748 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:13 Download gff for BS05491.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784380..1784428 17..65 100 -> Plus
arm_X 1784511..1784576 66..131 100 -> Plus
arm_X 1784646..1785262 132..748 100   Plus

BS05491.pep Sequence

Translation from 16 to 747

> BS05491.pep
MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV
IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW
GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH
YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR
VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHL*

BS05491.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-PB 243 CG3109-PB 1..243 1..243 1292 100 Plus
mRpL16-PA 243 CG3109-PA 1..243 1..243 1292 100 Plus