Clone Sequence Records
BS05492.3prime Sequence
818 bp (726 high quality bases) assembled on 2005-12-02
> BS05492.3prime
ATGGTCTAGAAAGCTTTTAGAACTGGTTCGCGGGCAAATAATGATTGCCG
ATGGGACCGACGCCAGAGTTTCCGGCACCGTTCTCCGCAAATTGTCCCTC
TGAATGTTGCTGCTGTTGCTGTTCCTCCTCCTCCTCCTCTGGAGGATCCA
GGGATCCCACCACCGAGGTGATGGGGGCCACACCCTCGTCGGTGATGGTC
GAACTTCCTCCCAAAGTATCGTACTGTGACTGAATCTGCCGCTGGGCATT
CAGAGCTTCCTCTGGAGTGCGGTACTTGATGAAGAACACCTCCGGCTTAT
TGATGTGCTGTGGCGCCTCGGCAATGGCATCCTGCAGATCGGAGGCGGTC
GTCTTCTTGGCCAGCACATAGACCACGGTCTTCTCCTGCTTAAGGGTCTT
GGCCAAGTTAAGAGCCGCCGCGCGATTGGTCTGAGCCGGCGTCTTGACGA
ACAGCACATTGTAGTGGTTACGGGGCTGCTGGGCCAACTGGTTCAGCTCG
TCCTGGACCTCATCCTCAGACTCCTCGGGCGCCGAGTGGATGAAAAAGTT
TTTGGTCACAATGGGACGCTTGGGAATCCTGACACGCGGACGAGCGCGTC
GCTGCTGCTGGATGGGAGCGGTCTGGAAATTGACGGGGAAGCCGGCGGGC
ATGGGAAACGATCCGGCTGTGGGACGAACTGCAGGCTGGGCAGAATGGAA
CTGGCCAGCGGGCGGGAGGTAGGGCAGTGGGAGAGGTGGAAGCACCGGGT
GCGAGGATTGCTGGGGCTGGAGCTGCTGCTGCTGCTGCAGTTGCTGGTTC
AACAGGTGGGCCACAATG
BS05492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4060-PA | 927 | CG4060-RA | 126..927 | 818..17 | 4010 | 100 | Minus |
| CG32570-PA | 744 | CG32570-RA | 490..516 | 298..272 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-RA | 1126 | CG4060-RA | 218..1019 | 818..17 | 4010 | 100 | Minus |
| TwdlQ-RA | 893 | CG14250-RA | 554..679 | 298..173 | 180 | 77.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17141315..17142116 | 17..818 | 4010 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 155..105 | 111 | 68.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6861 | 142..105 | 109 | 76.3 | Minus |
BS05492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:05 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4060-PA | 126..927 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:11 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4060-PA | 126..927 | 17..818 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:23:01 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 218..1026 | 8..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:43 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 218..1026 | 8..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:43 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17141308..17142116 | 8..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:23:01 Download gff for
BS05492.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12967030..12967838 | 8..818 | 99 | | Plus |
BS05492.5prime Sequence
869 bp (770 high quality bases) assembled on 2005-12-02
> BS05492.5prime
GAAGTTATCAGTCGACATGAAGATATTTGTGACGGTTCTGATGGGCGCCA
TGTGCCTGAGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCGGGTTAC
AACTACCGCATCCAACAGCAGCAGCAGCAACAGCAACCGCCCATTGTGGC
CCACCTGTTGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGCCCCAGC
AATCCTCGCACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTCCCGCCC
GCTGGCCAGTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGCCGGATC
GTTTCCCATGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTCCCATCC
AGCAGCAGCGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGTCCCATT
GTGACCAAAAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGAGGATGA
GGTCCAGGACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACCACTACA
ATGTGCTGTTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCGGCTCTT
AACTTGGCCAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGTGCTGGC
CAAGAAGACGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGGCGCCAC
AGCACATCAATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACTCCAGAG
GAAGCTCTGAATGCCCAGCGGCAGATTCAGTCACAGTACGATACTTTGGG
AGGAAGTTCGACCATCACCGACGAGGGTGTGGCCCCCATCACCTCGGTGG
TGGGATCCCTGGATCCTCCAGAGGAGGAGGAGGAGGAAACAGCACAGCAG
CAACATTCAGAGGGACAAT
BS05492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4060-PA | 927 | CG4060-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG32570-PA | 744 | CG32570-RA | 490..516 | 662..688 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-RA | 1126 | CG4060-RA | 92..945 | 16..869 | 4225 | 99.8 | Plus |
| TwdlQ-RA | 893 | CG14250-RA | 554..679 | 662..787 | 180 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17141389..17142227 | 869..31 | 4120 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 05:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6869 | 99..212 | 206 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6892 | 100..202 | 197 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 89..202 | 190 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6870 | 99..232 | 184 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2526 | 100..233 | 179 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 103..202 | 173 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1161 | 113..201 | 161 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2560 | 100..221 | 159 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 100..194 | 157 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2455 | 113..201 | 155 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2888 | 100..202 | 152 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6946 | 99..232 | 151 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6920 | 99..188 | 147 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2869 | 99..201 | 141 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2682 | 114..204 | 135 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6893 | 100..137 | 124 | 84.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 940..999 | 76..137 | 124 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1581 | 100..140 | 121 | 80.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1148 | 96..137 | 117 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5636..5673 | 99..137 | 111 | 79.5 | Plus |
BS05492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:06 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4060-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:12 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4060-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:14:19 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 92..945 | 16..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:55 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 92..945 | 16..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:55 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17141389..17142226 | 32..869 | 99 | <- | Minus |
| 3R | 17142298..17142313 | 16..31 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:14:19 Download gff for
BS05492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12967111..12967948 | 32..869 | 99 | <- | Minus |
| arm_3R | 12968020..12968035 | 16..31 | 100 | | Minus |
BS05492.complete Sequence
959 bp (959 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635146
> BS05492.complete
GAAGTTATCAGTCGACATGAAGATATTTGTGACGGTTCTGATGGGCGCCA
TGTGCCTGAGCCTCAGCCAGGCTGACATCAGCTTGACCCAGGCGGGTTAC
AACTACCGCATCCAACAGCAGCAGCAGCAACAGCAACCGCCCATTGTGGC
CCACCTGTTGAACCAGCAACTGCAGCAGCAGCAGCAGCTCCAGCCCCAGC
AATCCTCGCACCCGGTGCTTCCACCTCTCCCACTGCCCTACCTCCCGCCC
GCTGGCCAGTTCCATTCTGCCCAGCCTGCAGTTCGTCCCACAGCCGGATC
GTTTCCCATGCCCGCCGGCTTCCCCGTCAATTTCCAGACCGCTCCCATCC
AGCAGCAGCGACGCGCTCGTCCGCGTGTCAGGATTCCCAAGCGTCCCATT
GTGACCAAAAACTTTTTCATCCACTCGGCGCCCGAGGAGTCTGAGGATGA
GGTCCAGGACGAGCTGAACCAGTTGGCCCAGCAGCCCCGTAACCACTACA
ATGTGCTGTTCGTCAAGACGCCGGCTCAGACCAATCGCGCGGCGGCTCTT
AACTTGGCCAAGACCCTTAAGCAGGAGAAGACCGTGGTCTATGTGCTGGC
CAAGAAGACGACCGCCTCCGATCTGCAGGATGCCATTGCCGAGGCGCCAC
AGCACATCAATAAGCCGGAGGTGTTCTTCATCAAGTACCGCACTCCAGAG
GAAGCTCTGAATGCCCAGCGGCAGATTCAGTCACAGTACGATACTTTGGG
AGGAAGTTCGACCATCACCGACGAGGGTGTGGCCCCCATCACCTCGGTGG
TGGGATCCCTGGATCCTCCAGAGGAGGAGGAGGAGGAACAGCAACAGCAG
CAACATTCAGAGGGACAATTTGCGGAGAACGGTGCCGGAAACTCTGGCGT
CGGTCCCATCGGCAATCATTATTTGCCCGCGAACCAGTTCTAAAAGCTTT
CTAGACCAT
BS05492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-RA | 927 | CG4060-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
| TwdlQ-RA | 738 | CG14250-PA | 487..612 | 662..787 | 180 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-RA | 1126 | CG4060-RA | 92..1019 | 16..943 | 4640 | 100 | Plus |
| TwdlQ-RA | 893 | CG14250-RA | 554..679 | 662..787 | 180 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17141315..17142227 | 943..31 | 4565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6869 | 99..212 | 206 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6892 | 100..202 | 197 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 89..202 | 190 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6870 | 99..232 | 184 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2526 | 100..233 | 179 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2405 | 103..202 | 173 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1161 | 113..201 | 161 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2560 | 100..221 | 159 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 100..194 | 157 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2455 | 113..201 | 155 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2888 | 100..202 | 152 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6946 | 99..232 | 151 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6920 | 99..188 | 147 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2869 | 99..201 | 141 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2682 | 114..204 | 135 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6893 | 100..137 | 124 | 84.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 940..999 | 76..137 | 124 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1581 | 100..140 | 121 | 80.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1148 | 96..137 | 117 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5636..5673 | 99..137 | 111 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6768 | 805..855 | 111 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6861 | 818..855 | 109 | 76.3 | Plus |
BS05492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:54:50 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:43 Download gff for
BS05492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 86..1020 | 16..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:56 Download gff for
BS05492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 93..1017 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:54:50 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:29 Download gff for
BS05492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlW-RA | 93..1017 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:29 Download gff for
BS05492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17141317..17142226 | 32..941 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:56 Download gff for
BS05492.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12967039..12967948 | 32..941 | 100 | <- | Minus |
BS05492.pep Sequence
Translation from 16 to 942
> BS05492.pep
MKIFVTVLMGAMCLSLSQADISLTQAGYNYRIQQQQQQQQPPIVAHLLNQ
QLQQQQQLQPQQSSHPVLPPLPLPYLPPAGQFHSAQPAVRPTAGSFPMPA
GFPVNFQTAPIQQQRRARPRVRIPKRPIVTKNFFIHSAPEESEDEVQDEL
NQLAQQPRNHYNVLFVKTPAQTNRAAALNLAKTLKQEKTVVYVLAKKTTA
SDLQDAIAEAPQHINKPEVFFIKYRTPEEALNAQRQIQSQYDTLGGSSTI
TDEGVAPITSVVGSLDPPEEEEEEQQQQQHSEGQFAENGAGNSGVGPIGN
HYLPANQF*
BS05492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlW-PA | 308 | CG4060-PA | 1..308 | 1..308 | 1590 | 100 | Plus |
| TwdlV-PA | 251 | CG14640-PA | 51..250 | 89..306 | 376 | 42.5 | Plus |
| TwdlG-PC | 278 | CG14643-PC | 19..275 | 27..306 | 371 | 35.5 | Plus |
| TwdlG-PB | 278 | CG14643-PB | 19..275 | 27..306 | 371 | 35.5 | Plus |
| TwdlG-PA | 278 | CG14643-PA | 19..275 | 27..306 | 371 | 35.5 | Plus |
