Clone Sequence Records
BS05494.3prime Sequence
942 bp (742 high quality bases) assembled on 2005-12-02
> BS05494.3prime
ATGGTCTAGAAAGCTTTTAGAATTCGAGACTACCGCTTATCTTATAGAAC
TCATCCTCGGAGCGCGAATTCAATACGCACAGATGTACAGCCTGGCACTG
GGCTACTCCGAAATCGAAGTCTCCAAAGCGCTTGAGGATCTCGCGAGCGT
CAAAGCTGTTACCAGATTTATTTGCCTTATTGCGGTAGCGGTTGTTCATC
ACCGTCATGTGCAGTTTAATGGATTCACGTTCAATATTGTCTGTAGCGCA
CAGTGCTGTAGTCTGAAAGTGGGCCAGACACTGATCCGCAAACTTTTGCA
GATCCGGAGACTCGATGCGGGCATACAGAATGCGAGTGGAGCTTGGATCG
TCGTTCATAATCTCCAGGCCCTTAACTTTAATTTGGAAAGGTATTTTAAG
GCCATCCAGTAAACGACGACATGATTCCAGATTCTTCAGGGCTTCTTGGC
GTTCAATGTCATCTAGCAGCACATAGACGCCTAAGGTAAGATGAATGCAG
CACTCCGGAGTGAAAAGCTCCTTATCGATGCCTGGCAACTCGGCCTCCAA
AATGCATTTCTTTAGTTCCATAAAACGCTCCTTGACTTCTCCAGAGTTTA
GAGCCACGGCCAAAAAGTGTGTCGGTTTCATTTTTTTTCGTAAAGAGGCT
ACAAGATGGTGGATTTGTCGCAGTGCAGCGCATACTTGACTGCGTTGCTT
GGCCTTGATAGTCACTTCGTTTGACCTATCGTTCGGACGCGGAACAAAGA
TCTCTGTACGGGTCTCTTCCTCTATGCGGCGCTTCGTAGATCCTTTCATG
CCAATTAGTCCACCGTAAAATGATTTGGACACATGAATGGAAAGACTAAA
ATCGCCATTTGCTGACTCCTTAATACATTTGACAACCGCATCGTCCTCGT
CATCATCATCATCACCATAAGATCCGGCTCTTCGTAGGCTTT
BS05494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 1059 | CG12129-RA | 156..1059 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 230..1156 | 942..17 | 4610 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034615 | 561..17 | 2725 | 100 | Minus |
2R | 25286936 | 2R | 10033757..10034021 | 824..560 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 10033608..10033703 | 920..825 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:38:24 has no hits.
BS05494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:07 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 133..1059 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:14 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 133..1059 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:33 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 230..1164 | 10..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:34 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 230..1164 | 10..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:34 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033533..10033551 | 924..942 | 100 | -> | Minus |
2R | 10033604..10033703 | 825..923 | 99 | -> | Minus |
2R | 10033757..10034021 | 560..824 | 100 | -> | Minus |
2R | 10034073..10034623 | 10..559 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:33 Download gff for
BS05494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5921038..5921056 | 924..942 | 100 | -> | Minus |
arm_2R | 5921109..5921208 | 825..923 | 99 | -> | Minus |
arm_2R | 5921262..5921526 | 560..824 | 100 | -> | Minus |
arm_2R | 5921578..5922128 | 10..559 | 99 | | Minus |
BS05494.5prime Sequence
908 bp (796 high quality bases) assembled on 2005-11-29
> BS05494.5prime
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACC
BS05494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 1059 | CG12129-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 97..989 | 16..908 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034448 | 531..908 | 1890 | 100 | Plus |
2R | 25286936 | 2R | 10033757..10034021 | 268..532 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 10033400..10033551 | 16..167 | 760 | 100 | Plus |
2R | 25286936 | 2R | 10033603..10033703 | 167..267 | 505 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 12:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1429..1526 | 15..111 | 118 | 60.6 | Plus |
BS05494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:08 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:15 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:35 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 92..989 | 7..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:19 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 92..989 | 7..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:19 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033604..10033703 | 168..267 | 100 | -> | Plus |
2R | 10033395..10033551 | 11..167 | 98 | -> | Plus |
2R | 10033757..10034021 | 268..532 | 100 | -> | Plus |
2R | 10034073..10034448 | 533..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:35 Download gff for
BS05494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5921578..5921953 | 533..908 | 100 | | Plus |
arm_2R | 5920900..5921056 | 11..167 | 98 | -> | Plus |
arm_2R | 5921109..5921208 | 168..267 | 100 | -> | Plus |
arm_2R | 5921262..5921526 | 268..532 | 100 | -> | Plus |
BS05494.complete Sequence
1091 bp (1091 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635147
> BS05494.complete
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACCGCAATAAGGCAAATAAATCTGGTAACAGCTTTGACGCTCGCG
AGATCCTCAAGCGCTTTGGAGACTTCGATTTCGGAGTAGCCCAGTGCCAG
GCTGTACATCTGTGCGTATTGAATTCGCGCTCCGAGGATGAGTTCTATAA
GATAAGCGGTAGTCTCGAATTCTAAAAGCTTTCTAGACCAT
BS05494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1059 | CG12129-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 97..1156 | 16..1075 | 5300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034615 | 531..1075 | 2725 | 100 | Plus |
2R | 25286936 | 2R | 10033757..10034021 | 268..532 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 10033400..10033551 | 16..167 | 760 | 100 | Plus |
2R | 25286936 | 2R | 10033603..10033703 | 167..267 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1429..1526 | 15..111 | 118 | 60.6 | Plus |
BS05494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:51 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:44 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 102..1174 | 7..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:14 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 98..1154 | 17..1073 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:51 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 102..1174 | 7..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:29 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 98..1154 | 17..1073 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:29 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033401..10033551 | 17..167 | 100 | -> | Plus |
2R | 10033604..10033703 | 168..267 | 100 | -> | Plus |
2R | 10033757..10034021 | 268..532 | 100 | -> | Plus |
2R | 10034073..10034613 | 533..1073 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:14 Download gff for
BS05494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5920906..5921056 | 17..167 | 100 | -> | Plus |
arm_2R | 5921109..5921208 | 168..267 | 100 | -> | Plus |
arm_2R | 5921262..5921526 | 268..532 | 100 | -> | Plus |
arm_2R | 5921578..5922118 | 533..1073 | 100 | | Plus |
BS05494.pep Sequence
Translation from 16 to 1074
> BS05494.pep
MSREVLSPPVQKMSQNRRYRVNVVHDDFGGDKWNGQNQRNKLEYKAYEEP
DLYGDDDDDEDDAVVKCIKESANGDFSLSIHVSKSFYGGLIGMKGSTKRR
IEEETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMK
PTHFLAVALNSGEVKERFMELKKCILEAELPGIDKELFTPECCIHLTLGV
YVLLDDIERQEALKNLESCRRLLDGLKIPFQIKVKGLEIMNDDPSSTRIL
YARIESPDLQKFADQCLAHFQTTALCATDNIERESIKLHMTVMNNRYRNK
ANKSGNSFDAREILKRFGDFDFGVAQCQAVHLCVLNSRSEDEFYKISGSL
EF*
BS05494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 352 | CG12129-PA | 1..352 | 1..352 | 1833 | 100 | Plus |