Clone BS05494 Report

Search the DGRC for BS05494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG12129-RA
Protein status:BS05494.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05494.3prime Sequence

942 bp (742 high quality bases) assembled on 2005-12-02

> BS05494.3prime
ATGGTCTAGAAAGCTTTTAGAATTCGAGACTACCGCTTATCTTATAGAAC
TCATCCTCGGAGCGCGAATTCAATACGCACAGATGTACAGCCTGGCACTG
GGCTACTCCGAAATCGAAGTCTCCAAAGCGCTTGAGGATCTCGCGAGCGT
CAAAGCTGTTACCAGATTTATTTGCCTTATTGCGGTAGCGGTTGTTCATC
ACCGTCATGTGCAGTTTAATGGATTCACGTTCAATATTGTCTGTAGCGCA
CAGTGCTGTAGTCTGAAAGTGGGCCAGACACTGATCCGCAAACTTTTGCA
GATCCGGAGACTCGATGCGGGCATACAGAATGCGAGTGGAGCTTGGATCG
TCGTTCATAATCTCCAGGCCCTTAACTTTAATTTGGAAAGGTATTTTAAG
GCCATCCAGTAAACGACGACATGATTCCAGATTCTTCAGGGCTTCTTGGC
GTTCAATGTCATCTAGCAGCACATAGACGCCTAAGGTAAGATGAATGCAG
CACTCCGGAGTGAAAAGCTCCTTATCGATGCCTGGCAACTCGGCCTCCAA
AATGCATTTCTTTAGTTCCATAAAACGCTCCTTGACTTCTCCAGAGTTTA
GAGCCACGGCCAAAAAGTGTGTCGGTTTCATTTTTTTTCGTAAAGAGGCT
ACAAGATGGTGGATTTGTCGCAGTGCAGCGCATACTTGACTGCGTTGCTT
GGCCTTGATAGTCACTTCGTTTGACCTATCGTTCGGACGCGGAACAAAGA
TCTCTGTACGGGTCTCTTCCTCTATGCGGCGCTTCGTAGATCCTTTCATG
CCAATTAGTCCACCGTAAAATGATTTGGACACATGAATGGAAAGACTAAA
ATCGCCATTTGCTGACTCCTTAATACATTTGACAACCGCATCGTCCTCGT
CATCATCATCATCACCATAAGATCCGGCTCTTCGTAGGCTTT

BS05494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 1059 CG12129-RA 156..1059 920..17 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 230..1156 942..17 4610 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034615 561..17 2725 100 Minus
2R 25286936 2R 10033757..10034021 824..560 1325 100 Minus
2R 25286936 2R 10033608..10033703 920..825 480 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:38:24 has no hits.

BS05494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:07 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 133..1059 17..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:14 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 133..1059 17..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:33 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 230..1164 10..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:34 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 230..1164 10..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:34 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10033533..10033551 924..942 100 -> Minus
2R 10033604..10033703 825..923 99 -> Minus
2R 10033757..10034021 560..824 100 -> Minus
2R 10034073..10034623 10..559 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:33 Download gff for BS05494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5921038..5921056 924..942 100 -> Minus
arm_2R 5921109..5921208 825..923 99 -> Minus
arm_2R 5921262..5921526 560..824 100 -> Minus
arm_2R 5921578..5922128 10..559 99   Minus

BS05494.5prime Sequence

908 bp (796 high quality bases) assembled on 2005-11-29

> BS05494.5prime
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACC

BS05494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 1059 CG12129-RA 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 97..989 16..908 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034448 531..908 1890 100 Plus
2R 25286936 2R 10033757..10034021 268..532 1325 100 Plus
2R 25286936 2R 10033400..10033551 16..167 760 100 Plus
2R 25286936 2R 10033603..10033703 167..267 505 100 Plus
Blast to na_te.dros performed 2015-02-02 12:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1429..1526 15..111 118 60.6 Plus

BS05494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:08 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:15 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:35 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 92..989 7..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:19 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 92..989 7..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:19 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10033604..10033703 168..267 100 -> Plus
2R 10033395..10033551 11..167 98 -> Plus
2R 10033757..10034021 268..532 100 -> Plus
2R 10034073..10034448 533..908 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:35 Download gff for BS05494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5921578..5921953 533..908 100   Plus
arm_2R 5920900..5921056 11..167 98 -> Plus
arm_2R 5921109..5921208 168..267 100 -> Plus
arm_2R 5921262..5921526 268..532 100 -> Plus

BS05494.complete Sequence

1091 bp (1091 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635147

> BS05494.complete
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACCGCAATAAGGCAAATAAATCTGGTAACAGCTTTGACGCTCGCG
AGATCCTCAAGCGCTTTGGAGACTTCGATTTCGGAGTAGCCCAGTGCCAG
GCTGTACATCTGTGCGTATTGAATTCGCGCTCCGAGGATGAGTTCTATAA
GATAAGCGGTAGTCTCGAATTCTAAAAGCTTTCTAGACCAT

BS05494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1059 CG12129-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 97..1156 16..1075 5300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034615 531..1075 2725 100 Plus
2R 25286936 2R 10033757..10034021 268..532 1325 100 Plus
2R 25286936 2R 10033400..10033551 16..167 760 100 Plus
2R 25286936 2R 10033603..10033703 167..267 505 100 Plus
Blast to na_te.dros performed 2014-11-27 08:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1429..1526 15..111 118 60.6 Plus

BS05494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:51 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:44 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 102..1174 7..1082 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:14 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 98..1154 17..1073 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:51 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 102..1174 7..1082 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:29 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 98..1154 17..1073 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:29 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10033401..10033551 17..167 100 -> Plus
2R 10033604..10033703 168..267 100 -> Plus
2R 10033757..10034021 268..532 100 -> Plus
2R 10034073..10034613 533..1073 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:14 Download gff for BS05494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5920906..5921056 17..167 100 -> Plus
arm_2R 5921109..5921208 168..267 100 -> Plus
arm_2R 5921262..5921526 268..532 100 -> Plus
arm_2R 5921578..5922118 533..1073 100   Plus

BS05494.pep Sequence

Translation from 16 to 1074

> BS05494.pep
MSREVLSPPVQKMSQNRRYRVNVVHDDFGGDKWNGQNQRNKLEYKAYEEP
DLYGDDDDDEDDAVVKCIKESANGDFSLSIHVSKSFYGGLIGMKGSTKRR
IEEETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMK
PTHFLAVALNSGEVKERFMELKKCILEAELPGIDKELFTPECCIHLTLGV
YVLLDDIERQEALKNLESCRRLLDGLKIPFQIKVKGLEIMNDDPSSTRIL
YARIESPDLQKFADQCLAHFQTTALCATDNIERESIKLHMTVMNNRYRNK
ANKSGNSFDAREILKRFGDFDFGVAQCQAVHLCVLNSRSEDEFYKISGSL
EF*

BS05494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 352 CG12129-PA 1..352 1..352 1833 100 Plus