Clone BS05495 Report

Search the DGRC for BS05495

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptHis2Av-RA
Protein status:BS05495.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05495.3prime Sequence

456 bp (455 high quality bases) assembled on 2005-12-02

> BS05495.3prime
ATGGTCTAGAAAGCTTTTAGTAGGCCTGCGACAGAATGACGTTGCCCTTC
CGCTGCGGATCCTGCACCGTTTCCTCCTTTTTGCCGATCAGCGACTTGTG
TATGTGCGGAATGACACCGCCACCAGCGATGGTTGCCTTGATCAGGCTGT
CCAGCTCCTCGTCTCCGCGAATGGCGAGCTGTAAGTGGCGAGGAGTGATA
CGTTTCACTTTCAAGTCCTTCGATGCGTTGCCTGCCAACTCCAGGACCTC
GGCGGTCAGGTATTCCAATATGGCAGCGGAGTACACGGCTGCAGTGGCTC
CGACGCGTCCATGTGACGTAGTGCGGCTCTTGAGATGACGATGGATGCGA
CCCACGGGGAACTGAAGACCCGCGCGCGCGGAACGCGATACCGCCTTCGC
CTTGGCCTTGCCCGAATCCTTGCCTGCTTTACCGCCAGCCATGTCGACTG
ATAACT

BS05495.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5499-PA 426 His2Av-RA 1..426 442..17 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..590 442..17 2130 100 Minus
His2Av-RA 912 CG5499-RA 165..590 442..17 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868586 249..17 1165 100 Minus
3R 32079331 3R 26867666..26867784 364..246 595 100 Minus
3R 32079331 3R 26867408..26867486 440..362 395 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:16:09 has no hits.

BS05495.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:09 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:16 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:32:14 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 13..450 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:36 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 13..450 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:36 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26867403..26867486 362..447 97 -> Minus
3R 26867669..26867782 248..361 100 -> Minus
3R 26868356..26868588 13..247 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:32:14 Download gff for BS05495.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693125..22693208 362..447 97 -> Minus
arm_3R 22693391..22693504 248..361 100 -> Minus
arm_3R 22694078..22694310 13..247 99   Minus

BS05495.5prime Sequence

456 bp (455 high quality bases) assembled on 2005-12-02

> BS05495.5prime
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACTAAAAGCTTTC
TAGACC

BS05495.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5499-PA 426 His2Av-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..590 17..442 2130 100 Plus
His2Av-RA 912 CG5499-RA 165..590 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868586 210..442 1165 100 Plus
3R 32079331 3R 26867666..26867784 95..213 595 100 Plus
3R 32079331 3R 26867408..26867486 19..97 395 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:05:28 has no hits.

BS05495.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:10 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:17 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:14:42 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 9..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:34 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 9..446 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:34 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26868356..26868588 212..446 99   Plus
3R 26867403..26867486 12..97 97 -> Plus
3R 26867669..26867782 98..211 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:14:42 Download gff for BS05495.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693125..22693208 12..97 97 -> Plus
arm_3R 22693391..22693504 98..211 100 -> Plus
arm_3R 22694078..22694310 212..446 99   Plus

BS05495.complete Sequence

458 bp (458 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635148

> BS05495.complete
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACTAAAAGCTTTC
TAGACCAT

BS05495.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 426 CG5499-PB 1..426 17..442 2130 100 Plus
His2Av-RA 426 CG5499-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..590 17..442 2130 100 Plus
His2Av-RA 912 CG5499-RA 165..590 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868586 210..442 1165 100 Plus
3R 32079331 3R 26867666..26867784 95..213 595 100 Plus
3R 32079331 3R 26867408..26867486 19..97 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:36:51 has no hits.

BS05495.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:37 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:04 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 158..590 9..446 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:29 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 165..588 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:37 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 158..590 9..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:35 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 165..588 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:35 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26868356..26868584 212..440 100   Plus
3R 26867407..26867486 17..97 98 -> Plus
3R 26867669..26867782 98..211 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:29 Download gff for BS05495.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693129..22693208 17..97 98 -> Plus
arm_3R 22693391..22693504 98..211 100 -> Plus
arm_3R 22694078..22694306 212..440 100   Plus

BS05495.pep Sequence

Translation from 16 to 441

> BS05495.pep
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*

BS05495.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-PB 141 CG5499-PB 1..141 1..141 699 100 Plus
His2Av-PA 141 CG5499-PA 1..141 1..141 699 100 Plus
His2A:CG33865-PA 124 CG33865-PA 5..121 4..124 329 63.1 Plus
His2A:CG33862-PA 124 CG33862-PA 5..121 4..124 329 63.1 Plus
His2A:CG33859-PA 124 CG33859-PA 5..121 4..124 329 63.1 Plus