Clone Sequence Records
BS05495.3prime Sequence
456 bp (455 high quality bases) assembled on 2005-12-02
> BS05495.3prime
ATGGTCTAGAAAGCTTTTAGTAGGCCTGCGACAGAATGACGTTGCCCTTC
CGCTGCGGATCCTGCACCGTTTCCTCCTTTTTGCCGATCAGCGACTTGTG
TATGTGCGGAATGACACCGCCACCAGCGATGGTTGCCTTGATCAGGCTGT
CCAGCTCCTCGTCTCCGCGAATGGCGAGCTGTAAGTGGCGAGGAGTGATA
CGTTTCACTTTCAAGTCCTTCGATGCGTTGCCTGCCAACTCCAGGACCTC
GGCGGTCAGGTATTCCAATATGGCAGCGGAGTACACGGCTGCAGTGGCTC
CGACGCGTCCATGTGACGTAGTGCGGCTCTTGAGATGACGATGGATGCGA
CCCACGGGGAACTGAAGACCCGCGCGCGCGGAACGCGATACCGCCTTCGC
CTTGGCCTTGCCCGAATCCTTGCCTGCTTTACCGCCAGCCATGTCGACTG
ATAACT
BS05495.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5499-PA | 426 | His2Av-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..590 | 442..17 | 2130 | 100 | Minus |
His2Av-RA | 912 | CG5499-RA | 165..590 | 442..17 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:16:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868586 | 249..17 | 1165 | 100 | Minus |
3R | 32079331 | 3R | 26867666..26867784 | 364..246 | 595 | 100 | Minus |
3R | 32079331 | 3R | 26867408..26867486 | 440..362 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:16:09 has no hits.
BS05495.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:09 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:16 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:32:14 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 13..450 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:36 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 13..450 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:36 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26867403..26867486 | 362..447 | 97 | -> | Minus |
3R | 26867669..26867782 | 248..361 | 100 | -> | Minus |
3R | 26868356..26868588 | 13..247 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:32:14 Download gff for
BS05495.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693125..22693208 | 362..447 | 97 | -> | Minus |
arm_3R | 22693391..22693504 | 248..361 | 100 | -> | Minus |
arm_3R | 22694078..22694310 | 13..247 | 99 | | Minus |
BS05495.5prime Sequence
456 bp (455 high quality bases) assembled on 2005-12-02
> BS05495.5prime
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACTAAAAGCTTTC
TAGACC
BS05495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5499-PA | 426 | His2Av-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..590 | 17..442 | 2130 | 100 | Plus |
His2Av-RA | 912 | CG5499-RA | 165..590 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868586 | 210..442 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 26867666..26867784 | 95..213 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26867408..26867486 | 19..97 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:05:28 has no hits.
BS05495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:10 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:17 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:14:42 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:34 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 9..446 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:34 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26868356..26868588 | 212..446 | 99 | | Plus |
3R | 26867403..26867486 | 12..97 | 97 | -> | Plus |
3R | 26867669..26867782 | 98..211 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:14:42 Download gff for
BS05495.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693125..22693208 | 12..97 | 97 | -> | Plus |
arm_3R | 22693391..22693504 | 98..211 | 100 | -> | Plus |
arm_3R | 22694078..22694310 | 212..446 | 99 | | Plus |
BS05495.complete Sequence
458 bp (458 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635148
> BS05495.complete
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACTAAAAGCTTTC
TAGACCAT
BS05495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 426 | CG5499-PB | 1..426 | 17..442 | 2130 | 100 | Plus |
His2Av-RA | 426 | CG5499-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..590 | 17..442 | 2130 | 100 | Plus |
His2Av-RA | 912 | CG5499-RA | 165..590 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868586 | 210..442 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 26867666..26867784 | 95..213 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26867408..26867486 | 19..97 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:36:51 has no hits.
BS05495.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:37 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:04 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 158..590 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:29 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 165..588 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:37 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 158..590 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:35 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 165..588 | 17..440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:35 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26868356..26868584 | 212..440 | 100 | | Plus |
3R | 26867407..26867486 | 17..97 | 98 | -> | Plus |
3R | 26867669..26867782 | 98..211 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:29 Download gff for
BS05495.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693129..22693208 | 17..97 | 98 | -> | Plus |
arm_3R | 22693391..22693504 | 98..211 | 100 | -> | Plus |
arm_3R | 22694078..22694306 | 212..440 | 100 | | Plus |
BS05495.pep Sequence
Translation from 16 to 441
> BS05495.pep
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAY*
BS05495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-PB | 141 | CG5499-PB | 1..141 | 1..141 | 699 | 100 | Plus |
His2Av-PA | 141 | CG5499-PA | 1..141 | 1..141 | 699 | 100 | Plus |
His2A:CG33865-PA | 124 | CG33865-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33862-PA | 124 | CG33862-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33859-PA | 124 | CG33859-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |