Clone BS05496 Report

Search the DGRC for BS05496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:54
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptNap1-RA
Protein status:BS05496.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05496.3prime Sequence

896 bp (740 high quality bases) assembled on 2005-12-02

> BS05496.3prime
ATGGTCTAGAAAGCTTCTACTGATTCGGGCAGTCGTTGGGCGACTGCTTC
TTGATACCGGCTGATTTGGGGCCCTTTGGTGGCGGTGCATCGTCGTCGTC
GTACTCATCCTCCTCGTTCTCGTCATACTCCTCTTCGTCCTCATCGTCCT
CATCGTCGACGATGTCGCCAGTGTAGTAAAGCACTGCTTTTGGAATAATT
CTGGCGCGCAAGAAGTGACCAATTTCGAAGTCGGTGGCCAGGATCTGCTG
GGAGTCGTCGTCGACTTCCTCCTGGTCGCTCGGGACCTCTGGTGGGCTGA
AGAAATTGAAGAAGGAATCCGTCGGAACCTGCTTCACAATGGTGCGCACT
GCGCCGCGCTCCTTGTGCTTCTGCTTCTTGCGGATGGTCTTCACAGTAAG
GTTCATCTTCTTCTCCCAGTTAATGGTGCACCCCGTGCACTTGTAGATCT
CTGGGCCTTCAAATGCGAACGGATCGTTGGGATCCACGGTGGACTTCAAA
ACGTACTGCTTTGTGAGAACTGAGTTGGAGAAGTACTCGTTCTTGTCGAA
GTGAAACTCCAAGGTGTACGAATGCCCGTTGTCGTACTTGATGGAAATAT
CGATTAGCTTGCGGATGGCGGGCTCGTCGTGCGGCTGCACCATCTCAGAC
ATTATGGCCGTGTTGCGGAACACCGTCAGCCAGAAGCCGGGAATGCCCTT
GGCATCCTTGGGAATACTTTTCAAACTGCTCAGGGCCTCGCGGAAGTGCT
CGGCATCGGCCTCGTTGTCGGTCGACGACTCCGGTTCCTTCCACTGGGGC
TTCTCCTCGGCGGGGTCCACCTTGCCCTCGATGATCTCCCTGCGCTTATC
GAACAACGGCTGGTACTGCACCTGGTACTTCTGCTCCAGCTTGTAG

BS05496.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5330-PA 1113 Nap1-RA 234..1113 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 358..1237 896..17 4400 100 Minus
Nap1-RB 1393 CG5330-RB 375..1254 896..17 4400 100 Minus
Nap1-RA 1361 CG5330-RA 343..1222 896..17 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906381 575..896 1610 100 Plus
2R 25286936 2R 23905314..23905545 17..248 1160 100 Plus
2R 25286936 2R 23905605..23905794 245..434 950 100 Plus
2R 25286936 2R 23905855..23905997 433..575 715 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:22:32 has no hits.

BS05496.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:11 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-PA 234..1113 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:19 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5330-PA 234..1113 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:53 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 343..1225 11..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:54 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 343..1225 11..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:54 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23905311..23905541 11..244 98 <- Plus
2R 23905605..23905793 245..433 100 <- Plus
2R 23905856..23905996 434..574 100 <- Plus
2R 23906060..23906381 575..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:53 Download gff for BS05496.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19792834..19793064 11..244 98 <- Plus
arm_2R 19793128..19793316 245..433 100 <- Plus
arm_2R 19793379..19793519 434..574 100 <- Plus
arm_2R 19793583..19793904 575..896 100   Plus

BS05496.5prime Sequence

732 bp (730 high quality bases) assembled on 2005-11-29

> BS05496.5prime
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGA

BS05496.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5330-PA 1113 Nap1-RA 1..716 17..732 3580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 125..840 17..732 3580 100 Plus
Nap1-RB 1393 CG5330-RB 142..857 17..732 3580 100 Plus
Nap1-RA 1361 CG5330-RA 110..825 17..732 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906528 571..103 2345 100 Minus
2R 25286936 2R 23905855..23905997 713..571 715 100 Minus
2R 25286936 2R 23906614..23906700 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:24:04 has no hits.

BS05496.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:12 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:21 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5330-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:50 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..824 17..731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:35 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..824 17..731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:35 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23905856..23905996 572..712 100 <- Minus
2R 23905775..23905793 713..731 100 <- Minus
2R 23906060..23906528 103..571 100 <- Minus
2R 23906615..23906700 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:50 Download gff for BS05496.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19793298..19793316 713..731 100 <- Minus
arm_2R 19793379..19793519 572..712 100 <- Minus
arm_2R 19793583..19794051 103..571 100 <- Minus
arm_2R 19794138..19794223 17..102 100   Minus

BS05496.complete Sequence

1145 bp (1145 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638783

> BS05496.complete
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCA
GATCCTGGCCACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGAATTA
TTCCAAAAGCAGTGCTTTACTACACTGGCGACATCGTCGACGATGAGGAC
GATGAGGACGAAGAGGAGTATGACGAGAACGAGGAGGATGAGTACGACGA
CGACGATGCACCGCCACCAAAGGGCCCCAAATCAGCCGGTATCAAGAAGC
AGTCGCCCAACGACTGCCCGAATCAGTAGAAGCTTTCTAGACCAT

BS05496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1113 CG5330-PC 1..1113 17..1129 5565 100 Plus
Nap1-RB 1113 CG5330-PB 1..1113 17..1129 5565 100 Plus
Nap1-RA 1113 CG5330-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 125..1237 17..1129 5565 100 Plus
Nap1-RB 1393 CG5330-RB 142..1254 17..1129 5565 100 Plus
Nap1-RA 1361 CG5330-RA 110..1222 17..1129 5565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906528 571..103 2345 100 Minus
2R 25286936 2R 23905314..23905545 1129..898 1160 100 Minus
2R 25286936 2R 23905605..23905794 901..712 950 100 Minus
2R 25286936 2R 23905855..23905997 713..571 715 100 Minus
2R 25286936 2R 23906614..23906700 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:57:08 has no hits.

BS05496.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:52 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 1..1113 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:46 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 130..1245 17..1135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:53 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..1222 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:52 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 130..1245 17..1135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:47 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..1222 17..1129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:47 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23905314..23905541 902..1129 100 <- Minus
2R 23905605..23905793 713..901 100 <- Minus
2R 23905856..23905996 572..712 100 <- Minus
2R 23906060..23906528 103..571 100 <- Minus
2R 23906615..23906700 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:53 Download gff for BS05496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19792837..19793064 902..1129 100 <- Minus
arm_2R 19793128..19793316 713..901 100 <- Minus
arm_2R 19793379..19793519 572..712 100 <- Minus
arm_2R 19793583..19794051 103..571 100 <- Minus
arm_2R 19794138..19794223 17..102 100   Minus

BS05496.pep Sequence

Translation from 16 to 1128

> BS05496.pep
MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP
APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII
EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW
LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF
SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR
KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD
FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP
PKGPKSAGIKKQSPNDCPNQ*

BS05496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-PC 370 CG5330-PC 1..370 1..370 1974 100 Plus
Nap1-PB 370 CG5330-PB 1..370 1..370 1974 100 Plus
Nap1-PA 370 CG5330-PA 1..370 1..370 1974 100 Plus
CG3708-PB 362 CG3708-PB 46..340 30..325 602 40.9 Plus
mil-PA 283 CG5017-PA 37..277 60..347 425 33.7 Plus