Clone Sequence Records
BS05496.3prime Sequence
896 bp (740 high quality bases) assembled on 2005-12-02
> BS05496.3prime
ATGGTCTAGAAAGCTTCTACTGATTCGGGCAGTCGTTGGGCGACTGCTTC
TTGATACCGGCTGATTTGGGGCCCTTTGGTGGCGGTGCATCGTCGTCGTC
GTACTCATCCTCCTCGTTCTCGTCATACTCCTCTTCGTCCTCATCGTCCT
CATCGTCGACGATGTCGCCAGTGTAGTAAAGCACTGCTTTTGGAATAATT
CTGGCGCGCAAGAAGTGACCAATTTCGAAGTCGGTGGCCAGGATCTGCTG
GGAGTCGTCGTCGACTTCCTCCTGGTCGCTCGGGACCTCTGGTGGGCTGA
AGAAATTGAAGAAGGAATCCGTCGGAACCTGCTTCACAATGGTGCGCACT
GCGCCGCGCTCCTTGTGCTTCTGCTTCTTGCGGATGGTCTTCACAGTAAG
GTTCATCTTCTTCTCCCAGTTAATGGTGCACCCCGTGCACTTGTAGATCT
CTGGGCCTTCAAATGCGAACGGATCGTTGGGATCCACGGTGGACTTCAAA
ACGTACTGCTTTGTGAGAACTGAGTTGGAGAAGTACTCGTTCTTGTCGAA
GTGAAACTCCAAGGTGTACGAATGCCCGTTGTCGTACTTGATGGAAATAT
CGATTAGCTTGCGGATGGCGGGCTCGTCGTGCGGCTGCACCATCTCAGAC
ATTATGGCCGTGTTGCGGAACACCGTCAGCCAGAAGCCGGGAATGCCCTT
GGCATCCTTGGGAATACTTTTCAAACTGCTCAGGGCCTCGCGGAAGTGCT
CGGCATCGGCCTCGTTGTCGGTCGACGACTCCGGTTCCTTCCACTGGGGC
TTCTCCTCGGCGGGGTCCACCTTGCCCTCGATGATCTCCCTGCGCTTATC
GAACAACGGCTGGTACTGCACCTGGTACTTCTGCTCCAGCTTGTAG
BS05496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5330-PA | 1113 | Nap1-RA | 234..1113 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 358..1237 | 896..17 | 4400 | 100 | Minus |
Nap1-RB | 1393 | CG5330-RB | 375..1254 | 896..17 | 4400 | 100 | Minus |
Nap1-RA | 1361 | CG5330-RA | 343..1222 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906381 | 575..896 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 23905314..23905545 | 17..248 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 23905605..23905794 | 245..434 | 950 | 100 | Plus |
2R | 25286936 | 2R | 23905855..23905997 | 433..575 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:22:32 has no hits.
BS05496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:11 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-PA | 234..1113 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:19 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5330-PA | 234..1113 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:53 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 343..1225 | 11..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:54 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 343..1225 | 11..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:54 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905311..23905541 | 11..244 | 98 | <- | Plus |
2R | 23905605..23905793 | 245..433 | 100 | <- | Plus |
2R | 23905856..23905996 | 434..574 | 100 | <- | Plus |
2R | 23906060..23906381 | 575..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:53 Download gff for
BS05496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19792834..19793064 | 11..244 | 98 | <- | Plus |
arm_2R | 19793128..19793316 | 245..433 | 100 | <- | Plus |
arm_2R | 19793379..19793519 | 434..574 | 100 | <- | Plus |
arm_2R | 19793583..19793904 | 575..896 | 100 | | Plus |
BS05496.5prime Sequence
732 bp (730 high quality bases) assembled on 2005-11-29
> BS05496.5prime
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGA
BS05496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5330-PA | 1113 | Nap1-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 125..840 | 17..732 | 3580 | 100 | Plus |
Nap1-RB | 1393 | CG5330-RB | 142..857 | 17..732 | 3580 | 100 | Plus |
Nap1-RA | 1361 | CG5330-RA | 110..825 | 17..732 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906528 | 571..103 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 23905855..23905997 | 713..571 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23906614..23906700 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:24:04 has no hits.
BS05496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:12 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:21 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5330-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:50 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..824 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:35 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..824 | 17..731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:35 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905856..23905996 | 572..712 | 100 | <- | Minus |
2R | 23905775..23905793 | 713..731 | 100 | <- | Minus |
2R | 23906060..23906528 | 103..571 | 100 | <- | Minus |
2R | 23906615..23906700 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:50 Download gff for
BS05496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19793298..19793316 | 713..731 | 100 | <- | Minus |
arm_2R | 19793379..19793519 | 572..712 | 100 | <- | Minus |
arm_2R | 19793583..19794051 | 103..571 | 100 | <- | Minus |
arm_2R | 19794138..19794223 | 17..102 | 100 | | Minus |
BS05496.complete Sequence
1145 bp (1145 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638783
> BS05496.complete
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCA
GATCCTGGCCACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGAATTA
TTCCAAAAGCAGTGCTTTACTACACTGGCGACATCGTCGACGATGAGGAC
GATGAGGACGAAGAGGAGTATGACGAGAACGAGGAGGATGAGTACGACGA
CGACGATGCACCGCCACCAAAGGGCCCCAAATCAGCCGGTATCAAGAAGC
AGTCGCCCAACGACTGCCCGAATCAGTAGAAGCTTTCTAGACCAT
BS05496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1113 | CG5330-PC | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Nap1-RB | 1113 | CG5330-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Nap1-RA | 1113 | CG5330-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 125..1237 | 17..1129 | 5565 | 100 | Plus |
Nap1-RB | 1393 | CG5330-RB | 142..1254 | 17..1129 | 5565 | 100 | Plus |
Nap1-RA | 1361 | CG5330-RA | 110..1222 | 17..1129 | 5565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906528 | 571..103 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 23905314..23905545 | 1129..898 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 23905605..23905794 | 901..712 | 950 | 100 | Minus |
2R | 25286936 | 2R | 23905855..23905997 | 713..571 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23906614..23906700 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:57:08 has no hits.
BS05496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:52 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 1..1113 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:46 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 130..1245 | 17..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:53 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..1222 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:52 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 130..1245 | 17..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:47 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..1222 | 17..1129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:47 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905314..23905541 | 902..1129 | 100 | <- | Minus |
2R | 23905605..23905793 | 713..901 | 100 | <- | Minus |
2R | 23905856..23905996 | 572..712 | 100 | <- | Minus |
2R | 23906060..23906528 | 103..571 | 100 | <- | Minus |
2R | 23906615..23906700 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:53 Download gff for
BS05496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19792837..19793064 | 902..1129 | 100 | <- | Minus |
arm_2R | 19793128..19793316 | 713..901 | 100 | <- | Minus |
arm_2R | 19793379..19793519 | 572..712 | 100 | <- | Minus |
arm_2R | 19793583..19794051 | 103..571 | 100 | <- | Minus |
arm_2R | 19794138..19794223 | 17..102 | 100 | | Minus |
BS05496.pep Sequence
Translation from 16 to 1128
> BS05496.pep
MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP
APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII
EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW
LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF
SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR
KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD
FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP
PKGPKSAGIKKQSPNDCPNQ*
BS05496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-PC | 370 | CG5330-PC | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PB | 370 | CG5330-PB | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PA | 370 | CG5330-PA | 1..370 | 1..370 | 1974 | 100 | Plus |
CG3708-PB | 362 | CG3708-PB | 46..340 | 30..325 | 602 | 40.9 | Plus |
mil-PA | 283 | CG5017-PA | 37..277 | 60..347 | 425 | 33.7 | Plus |