Clone Sequence Records
BS05502.3prime Sequence
842 bp (747 high quality bases) assembled on 2005-12-02
> BS05502.3prime
ATGGTCTAGAAAGCTTCTAACCAGTGGGATCGAGTGTGTTAGCGCCATCC
GGCGCCGCAGATGTCGTGCCACTTCCCCCTTGTGACGCTGCATCGACAAG
GGACGTGGCAGTGGTTGATGAGGTTTCCGTAGAGGAGGACGCGGCCACAG
CATCGTGAGATGAAACTGCGGCGGCAGGTGGTGTGACGCCCACACCTTCG
ACCACTGCGGCTACAGGTGCTGCTTCCGCTCCAACCGGCGCCAAGTTAAC
TGGCGCAGCAGCAATGTCATCTGCAGCTGGCTGCTGTGCCGGCTGATCCG
GCTGCTGAAATGGACGCCTCATGTACATGATGATGCCCAGCAGTAGAGTT
AGAACGGTAATCATGTACAAGTCCCAATTGGCAGCAATATTTTCATCCAT
GTAGAAGATGAACCTGTAAGGTGACTCCTTGATTGATTCAATCGTGGCCA
ACATTTGTAGCTTAAAAAGCGCAATGGCCACAGGCACTTTGGCGTCTGAA
TTGGTTTCCGCAGCCAAATCGTATAATCTCTTTGCCAGATGCCAGTCTTT
CTTCATTCCGAGCCCTTGCTCGTGCATGTATCCCAAGTTGAACATGGCTT
GGGCATTATATTGCTGCTCAGAGGCTTTCCTGTAAAGAGCAGCGGCAGTC
TCGAAGTCCGTCGAAGTACCCCAACCGTAGTAATAGTAATCGCCCAGCTT
GACTTGGGCCGCAGAATAGCCCTGTCCGGCTGCTCGTTTCCAGTAGTAGA
AGGCACGAATCAGATCTTCGTGCCGATCGTTGAACACATGCACCTCCTTG
CGGTCTAATAAAAAGGCGGCATTACTTTGAGCCACCTCATAG
BS05502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10221-PA | 2460 | CG10221-RA | 1635..2460 | 842..17 | 4105 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 3286 | CG10221-RB | 2278..3103 | 842..17 | 4115 | 99.9 | Minus |
| Hrd3-RA | 3022 | CG10221-RA | 2014..2839 | 842..17 | 4115 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23754806..23755215 | 17..426 | 2050 | 100 | Plus |
| 3R | 32079331 | 3R | 23755538..23755751 | 629..842 | 1055 | 99.5 | Plus |
| 3R | 32079331 | 3R | 23755274..23755483 | 425..634 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:02:34 has no hits.
BS05502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:13 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-PA | 1635..2460 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:22 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-PA | 1635..2460 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:48:56 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 2014..2843 | 11..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:56:14 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 2014..2843 | 11..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:56:14 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23754802..23755213 | 11..424 | 99 | <- | Plus |
| 3R | 23755274..23755478 | 425..629 | 100 | <- | Plus |
| 3R | 23755539..23755751 | 630..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:48:56 Download gff for
BS05502.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19580996..19581200 | 425..629 | 100 | <- | Plus |
| arm_3R | 19581261..19581473 | 630..842 | 99 | | Plus |
| arm_3R | 19580524..19580935 | 11..424 | 99 | <- | Plus |
BS05502.5prime Sequence
859 bp (786 high quality bases) assembled on 2005-12-02
> BS05502.5prime
GAAGTTATCAGTCGACATGAAGGCCAACAGCTGGATGTGCCTGCTGGCGC
TGCTTCTCGCCTGGCAGCTGCGAGCGGAGGAGCTCCAAGGGCCCAACATT
GATGGTACGGGCAGCAGTTTGGGTTCGGCCACAGGTACGGGTACGGGAAC
GGGATTGGGCACGGGAACAGCCACGCCAACGCTGCCCAATGAGCCCTCCA
CCCAGGCGGAGGCGGAGGAGGTGACCACGGCGGAATCAGAGTCGCGGGTT
CCGTCGGAAAGCAACGAACGCAAGGCAGACAAACCCAAGGAGTCCACAAA
GTTTGCTTCCAGGACGAAGGTTATGCCGGCTTCCCTGTTCGAACGCCTGT
GGAACGAAAGTCTGATCAGGCGGCAAAAGCTGAAAGCCGAGATCGAGCGC
ATCGAAGCCAAACGCAAATCCACTGAAGTGTTAGAACTTACCCCAGACCA
AATAGAAGCTCAAACCGTGTACGACAACGCAATGGACATGTTGGCCAAGC
CAAGCACGGATAAGCGAGTAGCCATGATTTTGCTTAAGAAGGCTGCTGCA
TTTAATCACCTCAAGGCGAGGGCGGAACTAGCCTGGGCCGCCCTACTGGG
TCAATGGATGGACTTTGATTTCAACCATGCTGTCGATGAGTTTGAGAGTC
TGGCCAACGAAGGCGTCCCAGAGGCTCACATGGGCCTGGGATTCCTTTAT
TCGGTGGGCGTTGGCGGTAAAAATGTAAGCCAGCCCCTGGCACTGATCCA
CTATAGCCTGGCTGCCCTCGGTGATAATACTCCGGCGCAAATGGCCATGG
GGTATCGCTATCTTTATGGCATCAATGTGCCCCATAGCTGTGAGAAGGCG
CTGATCCAC
BS05502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10221-PA | 2460 | CG10221-RA | 1..843 | 17..859 | 4165 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 3286 | CG10221-RB | 644..1486 | 17..859 | 4185 | 99.8 | Plus |
| Hrd3-RA | 3022 | CG10221-RA | 380..1222 | 17..859 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23757197..23757638 | 458..17 | 2210 | 100 | Minus |
| 3R | 32079331 | 3R | 23756743..23757145 | 859..457 | 1985 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:50:56 has no hits.
BS05502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:15 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:23 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:22:49 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 368..1222 | 3..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:23 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 368..1222 | 3..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:23 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23756743..23757143 | 459..859 | 99 | <- | Minus |
| 3R | 23757197..23757650 | 3..458 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:22:49 Download gff for
BS05502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19582465..19582865 | 459..859 | 99 | <- | Minus |
| arm_3R | 19582919..19583372 | 3..458 | 98 | | Minus |
BS05502.complete Sequence
2492 bp assembled on 2009-12-07
GenBank Submission: KX797871
> BS05502.complete
GAAGTTATCAGTCGACATGAAGGCCAACAGCTGGATGTGCCTGCTGGCGC
TGCTTCTCGCCTGGCAGCTGCGAGCGGAGGAGCTCCAAGGGCCCAACATT
GATGGTACGGGCAGCAGTTTGGGTTCGGCCACAGGTACGGGTACGGGAAC
GGGATTGGGCACGGGAACAGCCACGCCAACGCTGCCCAATGAGCCCTCCA
CCCAGGCGGAGGCGGAGGAGGTGACCACGGCGGAATCAGAGTCGCGGGTT
CCGTCGGAAAGCAACGAACGCAAGGCAGACAAACCCAAGGAGTCCACAAA
GTTTGCTTCCAGGACGAAGGTTATGCCGGCTTCCCTGTTCGAACGCCTGT
GGAACGAAAGTCTGATCAGGCGGCAAAAGCTGAAAGCCGAGATCGAGCGC
ATCGAAGCCAAACGCAAATCCACTGAAGTGTTAGAACTTACCCCAGACCA
AATAGAAGCTCAAACCGTGTACGACAACGCAATGGACATGTTGGCCAAGC
CAAGCACGGATAAGCGAGTAGCCATGATTTTGCTTAAGAAGGCTGCTGCA
TTTAATCACCTCAAGGCGAGGGCGGAACTAGCCTGGGCCGCCCTACTGGG
TCAATGGATGGACTTTGATTTCAACCATGCTGTCGATGAGTTTGAGAGTC
TGGCCAACGAAGGCGTCCCAGAGGCTCACATGGGCCTGGGATTCCTTTAT
TCGGTGGGCGTTGGCGGTAAAAATGTAAGCCAGCCCCTGGCACTGATCCA
CTATAGCCTGGCTGCCCTCGGTGATAATACTCCGGCGCAAATGGCCATGG
GGTATCGCTATCTTTATGGCATCAATGTGCCCATTAGCTGTGAGAAGGCG
CTGATCCACTACAAGCGAGTAGCCAAAAAAGTGGCTTCCAAGATAACCTT
CGCCAATGGGCCGGTTGTGCATCGGGTAAGACTGCTGGATGACCTAGAGA
ATCCCGGCAGTTCCGAAACTGAGATTGTCGACTATTACAAACTTCTGGCC
GATAAAGGCGACATCCAGTCGCAGGTGGGATTGGGTCAGGTGTACTATCA
GGGCGGCAAGGTCACCGAGCAAGATCATCAAAAGGCTTTGGAATATTTCA
AAATGGCCGCCGATGCAGGTAGTGCAGTTGGCATCGCGTTTTTAGGCAAG
CTTTATCTGGAAGGAAGTGATCAAATCAGGGCCGATAATGATGCAGCATT
TGGGTACTTCTCCAAGGCCGCTGAAATGGGGGATCCAGTTGGTCAAAGCG
GACTGGGCCTCATGTATCTAAAGGGTTTAGGTGTTCCCAAAGACTCCATC
AAGGCATTATCCTATTTCACTCAGGCGGCTGATCAAGGTTGGGTTGATGG
GCAACTGCAGCTGGGCAACATGTATTTCACTGGCAATGGTGTAAAAACCG
ACTACAAGTTAGCCTTTAAGTACTTCAACCTGGCCACCCAATCAGGCCAT
GTTTTAGCCTATTATAATCTGGGAGTGATGAATGCCTACGGTATGGGAAT
GCTGCGTTCATGTCCAGCAGCAGTAGAATTCTTCAAGACTGTTTCGGAGC
GTGGCCGTTGGAGCAGCCGATTGATGATGGCCTACAGCGACTATAAAAAT
AACCGCATCGACGAGGCCTACATGCAGTACTCGTTGATGGCCGAAATGGG
CTATGAGGTGGCTCAAAGTAATGCCGCCTTTTTACTAGACCGCAAGGAGG
TGCATGTGTTCAACGATCGGCACGAAGATCTGATTCGTGCCTTCTACTAC
TGGAAACGAGCAGCCGGACAGGGCTATTCTGCGGCCCAAGTCAAGCTGGG
CGATTACTATTACTACGGTTGGGGTACTTCGACGGACTTCGAGACTGCCG
CTGCTCTTTACAGGAAAGCCTCTGAGCAGCAATATAATGCCCAAGCCATG
TTCAACTTGGGATACATGCACGAGCAAGGGCTCGGAATGAAGAAAGACTG
GCATCTGGCAAAGAGATTATACGATTTGGCTGCGGAAACCAATTCAGACG
CCAAAGTGCCTGTGGCCATTGCGCTTTTTAAGCTACAAATGTTGGCCACG
ATTGAATCAATCAAGGAGTCACCTTACAGGTTCATCTTCTACATGGATGA
AAATATTGCTGCCAATTGGGACTTGTACATGATTACCGTTCTAACTCTAC
TGCTGGGCATCATCATGTACATGAGGCGTCCATTTCAGCAGCCGGATCAG
CCGGCACAGCAGCCAGCTGCAGATGACATTGCTGCTGCGCCAGTTAACTT
GGCGCCGGTTGGAGCGGAAGCAGCACCTGTAGCCGCAGTGGTCGAAGGTG
TGGGCGTCACACCACCTGCCGCCGCAGTTTCATCTCACGATGCTGTGGCC
GCGTCCTCCTCTACGGAAACCTCATCAACCACTGCCACGTCCCTTGTCGA
TGCAGCGTCACAAGGGGGAAGTGGCACGACATCTGCGGCGCCGGATGGCG
CTAACACACTCGATCCCACTGGTTAGAAGCTTTCTAGACCAT
BS05502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 2460 | CG10221-PB | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| Hrd3-RA | 2460 | CG10221-PA | 1..2460 | 17..2476 | 12300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 3286 | CG10221-RB | 644..3103 | 17..2476 | 12300 | 100 | Plus |
| Hrd3-RA | 3022 | CG10221-RA | 380..2839 | 17..2476 | 12300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23756398..23757145 | 1204..457 | 3740 | 100 | Minus |
| 3R | 32079331 | 3R | 23757197..23757638 | 458..17 | 2210 | 100 | Minus |
| 3R | 32079331 | 3R | 23754806..23755215 | 2476..2067 | 2050 | 100 | Minus |
| 3R | 32079331 | 3R | 23755538..23755873 | 1864..1529 | 1680 | 100 | Minus |
| 3R | 32079331 | 3R | 23755274..23755483 | 2068..1859 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 23756157..23756332 | 1379..1204 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 23755939..23756087 | 1528..1380 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:21:00 has no hits.
BS05502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:41 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-RA | 501..2960 | 17..2476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:04 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 380..2839 | 17..2476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:15 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-RA | 501..2960 | 17..2476 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:31 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 380..2839 | 17..2476 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:31 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23755274..23755478 | 1864..2068 | 100 | <- | Minus |
| 3R | 23757197..23757638 | 17..458 | 100 | | Minus |
| 3R | 23754806..23755213 | 2069..2476 | 100 | <- | Minus |
| 3R | 23755539..23755873 | 1529..1863 | 100 | <- | Minus |
| 3R | 23755939..23756087 | 1380..1528 | 100 | <- | Minus |
| 3R | 23756157..23756331 | 1205..1379 | 100 | <- | Minus |
| 3R | 23756398..23757143 | 459..1204 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:04 Download gff for
BS05502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19580528..19580935 | 2069..2476 | 100 | <- | Minus |
| arm_3R | 19580996..19581200 | 1864..2068 | 100 | <- | Minus |
| arm_3R | 19581261..19581595 | 1529..1863 | 100 | <- | Minus |
| arm_3R | 19581661..19581809 | 1380..1528 | 100 | <- | Minus |
| arm_3R | 19581879..19582053 | 1205..1379 | 100 | <- | Minus |
| arm_3R | 19582120..19582865 | 459..1204 | 100 | <- | Minus |
| arm_3R | 19582919..19583360 | 17..458 | 100 | | Minus |
BS05502.pep Sequence
Translation from 16 to 2475
> BS05502.pep
MKANSWMCLLALLLAWQLRAEELQGPNIDGTGSSLGSATGTGTGTGLGTG
TATPTLPNEPSTQAEAEEVTTAESESRVPSESNERKADKPKESTKFASRT
KVMPASLFERLWNESLIRRQKLKAEIERIEAKRKSTEVLELTPDQIEAQT
VYDNAMDMLAKPSTDKRVAMILLKKAAAFNHLKARAELAWAALLGQWMDF
DFNHAVDEFESLANEGVPEAHMGLGFLYSVGVGGKNVSQPLALIHYSLAA
LGDNTPAQMAMGYRYLYGINVPISCEKALIHYKRVAKKVASKITFANGPV
VHRVRLLDDLENPGSSETEIVDYYKLLADKGDIQSQVGLGQVYYQGGKVT
EQDHQKALEYFKMAADAGSAVGIAFLGKLYLEGSDQIRADNDAAFGYFSK
AAEMGDPVGQSGLGLMYLKGLGVPKDSIKALSYFTQAADQGWVDGQLQLG
NMYFTGNGVKTDYKLAFKYFNLATQSGHVLAYYNLGVMNAYGMGMLRSCP
AAVEFFKTVSERGRWSSRLMMAYSDYKNNRIDEAYMQYSLMAEMGYEVAQ
SNAAFLLDRKEVHVFNDRHEDLIRAFYYWKRAAGQGYSAAQVKLGDYYYY
GWGTSTDFETAAALYRKASEQQYNAQAMFNLGYMHEQGLGMKKDWHLAKR
LYDLAAETNSDAKVPVAIALFKLQMLATIESIKESPYRFIFYMDENIAAN
WDLYMITVLTLLLGIIMYMRRPFQQPDQPAQQPAADDIAAAPVNLAPVGA
EAAPVAAVVEGVGVTPPAAAVSSHDAVAASSSTETSSTTATSLVDAASQG
GSGTTSAAPDGANTLDPTG*
BS05502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-PB | 819 | CG10221-PB | 1..819 | 1..819 | 4211 | 100 | Plus |
| Hrd3-PA | 819 | CG10221-PA | 1..819 | 1..819 | 4211 | 100 | Plus |
