Clone BS05507 Report

Search the DGRC for BS05507

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG4757-RA
Protein status:BS05507.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05507.3prime Sequence

944 bp (768 high quality bases) assembled on 2005-12-02

> BS05507.3prime
ATGGTCTAGAAAGCTTTTAGTGAAAGCTTGAAAGTGGAAATAAATCCTCC
CAAATTTGATACCGATTCAAAAAGAAACCGCCAGATTTTGCTGTAAGGTT
ATTTCCAATTTCTAGATATCCTTTATCTTGCGCGTTGTATAGCGGCCAAT
TCAGACCTTTCAGGTATTCATCGTTTTTGTTGTGAGGATCACCCTTTTGA
GCAAATTCAATCCACATACGTGTCAATAGCTCGATCATAAAATTTTCCGG
ATCCTCTCGCTTCAACAAAGGAATCAAAAGTCCAACATGGAATAAATATA
TTAGCTCGTCATGGTGAACGGGGCCTATGGTTTGCTGGTTATCGGGATTT
TTCAAGAAGGTATATCTACCCTTGTAACGGAACAGATATGTGTAAATGGG
TGTGTGGGGGGACATCAGTTGAAGAAATCGATGGAAGGACACTCCAATCA
GGGCGTCGCTCAAGAGTTCACCCATACCCTTAAGTGATTTCGGGTACTCC
AGCTTGTCCAAACTTTCCGGCATATATTTTTCCCGGAAAACTCGACTGGC
AGCTCGCGATTGCGTTGAGTTTTGTTCCAAGAGCAACGCAATAGAAGCAT
AGTGTTCCCAATCCCTATTATAGCGGTTAACAATGCTTTCATTTCGCAGA
TCAAAGAAAGCGCCCGAAAGGAACTCAAACTCCGTAATGCCGGTGATGAG
GGCTACCTTGTGAAAGTCGCCACGTCGAGCTGTTTTGAAAGGACTTTCGA
TGAGGTAACGCTCCTGCCCAAAATCCTTCTCCACAACGATTCTCCAGTTG
AGCACGGGATTCCAGCCGAATTCAAACATGCCATTATAAGTGCTCACATA
ATCCCAGTAGGGCTTCCGCCTCATACACTCCACCATTTCCCCAATGGATT
CCTGTGGACACTTCAATAAACCAGCCTGACGTTTGGNCAGTTGT

BS05507.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-PA 1653 CG4757-RA 726..1653 944..17 4596 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-RB 2098 CG4757-RB 748..1675 944..17 4614 99.8 Minus
CG4757-RA 1729 CG4757-RA 748..1675 944..17 4614 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11162314..11162644 654..324 1655 100 Minus
3R 32079331 3R 11161954..11162243 944..655 1424 99.3 Minus
3R 32079331 3R 11162900..11163075 192..17 880 100 Minus
3R 32079331 3R 11162710..11162844 326..192 675 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:09:04 has no hits.

BS05507.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:22 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-PA 726..1653 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:33 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-PA 726..1653 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:28 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 748..1683 10..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:03 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 748..1683 10..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:03 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11161954..11162243 655..944 99 -> Minus
3R 11162314..11162643 325..654 100 -> Minus
3R 11162712..11162844 192..324 100 -> Minus
3R 11162901..11163075 15..191 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:28 Download gff for BS05507.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6988434..6988566 192..324 100 -> Minus
arm_3R 6987676..6987965 655..944 99 -> Minus
arm_3R 6988036..6988365 325..654 100 -> Minus
arm_3R 6988623..6988797 15..191 98 -> Minus

BS05507.5prime Sequence

902 bp (792 high quality bases) assembled on 2005-12-02

> BS05507.5prime
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGC
CAAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGNGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCNGCTGGAATCCCGTGCTCAACTGGAGAATCGT
TG

BS05507.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-PA 1653 CG4757-RA 1..886 17..902 4392 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-RB 2098 CG4757-RB 23..908 17..902 4408 99.8 Plus
CG4757-RA 1729 CG4757-RA 23..908 17..902 4408 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11161229..11162114 17..902 4408 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 09:42:29 has no hits.

BS05507.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:23 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:34 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:30 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 23..908 17..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:27 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 23..908 17..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:27 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11161229..11162114 17..902 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:30 Download gff for BS05507.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6986951..6987836 17..902 99   Plus

BS05507.complete Sequence

1685 bp assembled on 2007-10-17

GenBank Submission: FJ635149

> BS05507.complete
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGC
CAAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGGGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCGGCTGGAATCCCGTGCTCAACTGGAGAATCGT
TGTGGAGAAGGATTTTGGGCAGGAGCGTTACCTCATCGAAAGTCCTTTCA
AAACAGCTCGACGTGGCGACTTTCACAAGGTAGCCCTCATCACCGGCATT
ACGGAGTTTGAGTTCCTTTCGGGCGCTTTCTTTGATCTGCGAAATGAAAG
CATTGTTAACCGCTATAATAGGGATTGGGAACACTATGCTTCTATTGCGT
TGCTCTTGGAACAAAACTCAACGCAATCGCGAGCTGCCAGTCGAGTTTTC
CGGGAAAAATATATGCCGGAAAGTTTGGACAAGCTGGAGTACCCGAAATC
ACTTAAGGGTATGGGTGAACTCTTGAGCGACGCCCTGATTGGAGTGTCCT
TCCATCGATTTCTTCAACTGATGTCCCCCCACACACCCATTTACACATAT
CTGTTCCGTTACAAGGGTAGATATACCTTCTTGAAAAATCCCGATAACCA
GCAAACCATAGGCCCCGTTCACCATGACGAGCTAATATATTTATTCCATG
TTGGACTTTTGATTCCTTTGTTGAAGCGAGAGGATCCGGAAAATTTTATG
ATCGAGCTATTGACACGTATGTGGATTGAATTTGCTCAAAAGGGTGATCC
TCACAACAAAAACGATGAATACCTGAAAGGTCTGAATTGGCCGCTATACA
ACGCGCAAGATAAAGGATATCTAGAAATTGGAAATAACCTTACAGCAAAA
TCTGGCGGTTTCTTTTTGAATCGGTATCAAATTTGGGAGGATTTATTTCC
ACTTTCAAGCTTTCACTAAAAGCTTTCTAGACCAT

BS05507.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-RB 1653 CG4757-PB 1..1653 17..1669 8265 100 Plus
CG4757-RA 1653 CG4757-PA 1..1653 17..1669 8265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-RB 2098 CG4757-RB 23..1675 17..1669 8265 100 Plus
CG4757-RA 1729 CG4757-RA 23..1675 17..1669 8265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11161229..11162243 17..1031 5075 100 Plus
3R 32079331 3R 11162314..11162644 1032..1362 1655 100 Plus
3R 32079331 3R 11162900..11163075 1494..1669 880 100 Plus
3R 32079331 3R 11162710..11162844 1360..1494 675 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:28:17 has no hits.

BS05507.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:53 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 1..1653 17..1669 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:01 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 28..1688 17..1676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:38 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 23..1673 17..1667 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:04 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 28..1678 17..1667 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:32 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
CG4757-RA 23..1673 17..1667 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:32 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11161229..11162243 17..1031 100 -> Plus
3R 11162314..11162643 1032..1361 100 -> Plus
3R 11162712..11162844 1362..1494 100 -> Plus
3R 11162901..11163073 1495..1667 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:38 Download gff for BS05507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6986951..6987965 17..1031 100 -> Plus
arm_3R 6988036..6988365 1032..1361 100 -> Plus
arm_3R 6988434..6988566 1362..1494 100 -> Plus
arm_3R 6988623..6988795 1495..1667 100   Plus

BS05507.pep Sequence

Translation from 16 to 1668

> BS05507.pep
MLMLFVVELLVLLASSSVLSIEVDTELGRVRGANLTSRLGVNFHAFRGIR
YAEPPLGDLRFVNPQPVKPWSPKIFDASEDGPMCPQPWDNMTDVSEDCLR
LNVYTKDLKGRRPVIVFLHPGGFYVFSGQSKYLAGPEHFMDRDCVLVSLN
YRLGSLGFLATGSKEAPGNAGLKDQVLALRWIQQHIQRFGGDPDSVTLLG
YSAGSISVALHMLSPMSRGLFHRGICMSAAPYGPVKYKDNDLQLAKRQAG
LLKCPQESIGEMVECMRRKPYLDYVSTYNGMFEFGWNPVLNWRIVVEKDF
GQERYLIESPFKTARRGDFHKVALITGITEFEFLSGAFFDLRNESIVNRY
NRDWEHYASIALLLEQNSTQSRAASRVFREKYMPESLDKLEYPKSLKGMG
ELLSDALIGVSFHRFLQLMSPHTPIYTYLFRYKGRYTFLKNPDNQQTIGP
VHHDELIYLFHVGLLIPLLKREDPENFMIELLTRMWIEFAQKGDPHNKND
EYLKGLNWPLYNAQDKGYLEIGNNLTAKSGGFFLNRYQIWEDLFPLSSFH
*

BS05507.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4757-PB 550 CG4757-PB 1..550 1..550 2929 100 Plus
CG4757-PA 550 CG4757-PA 1..550 1..550 2929 100 Plus
CG4382-PB 580 CG4382-PB 37..572 14..547 1217 44.7 Plus
CG3841-PB 564 CG3841-PB 12..536 9..548 795 34.9 Plus
CG3841-PA 564 CG3841-PA 12..536 9..548 795 34.9 Plus