Clone Sequence Records
BS05507.3prime Sequence
944 bp (768 high quality bases) assembled on 2005-12-02
> BS05507.3prime
ATGGTCTAGAAAGCTTTTAGTGAAAGCTTGAAAGTGGAAATAAATCCTCC
CAAATTTGATACCGATTCAAAAAGAAACCGCCAGATTTTGCTGTAAGGTT
ATTTCCAATTTCTAGATATCCTTTATCTTGCGCGTTGTATAGCGGCCAAT
TCAGACCTTTCAGGTATTCATCGTTTTTGTTGTGAGGATCACCCTTTTGA
GCAAATTCAATCCACATACGTGTCAATAGCTCGATCATAAAATTTTCCGG
ATCCTCTCGCTTCAACAAAGGAATCAAAAGTCCAACATGGAATAAATATA
TTAGCTCGTCATGGTGAACGGGGCCTATGGTTTGCTGGTTATCGGGATTT
TTCAAGAAGGTATATCTACCCTTGTAACGGAACAGATATGTGTAAATGGG
TGTGTGGGGGGACATCAGTTGAAGAAATCGATGGAAGGACACTCCAATCA
GGGCGTCGCTCAAGAGTTCACCCATACCCTTAAGTGATTTCGGGTACTCC
AGCTTGTCCAAACTTTCCGGCATATATTTTTCCCGGAAAACTCGACTGGC
AGCTCGCGATTGCGTTGAGTTTTGTTCCAAGAGCAACGCAATAGAAGCAT
AGTGTTCCCAATCCCTATTATAGCGGTTAACAATGCTTTCATTTCGCAGA
TCAAAGAAAGCGCCCGAAAGGAACTCAAACTCCGTAATGCCGGTGATGAG
GGCTACCTTGTGAAAGTCGCCACGTCGAGCTGTTTTGAAAGGACTTTCGA
TGAGGTAACGCTCCTGCCCAAAATCCTTCTCCACAACGATTCTCCAGTTG
AGCACGGGATTCCAGCCGAATTCAAACATGCCATTATAAGTGCTCACATA
ATCCCAGTAGGGCTTCCGCCTCATACACTCCACCATTTCCCCAATGGATT
CCTGTGGACACTTCAATAAACCAGCCTGACGTTTGGNCAGTTGT
BS05507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-PA | 1653 | CG4757-RA | 726..1653 | 944..17 | 4596 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-RB | 2098 | CG4757-RB | 748..1675 | 944..17 | 4614 | 99.8 | Minus |
CG4757-RA | 1729 | CG4757-RA | 748..1675 | 944..17 | 4614 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11162314..11162644 | 654..324 | 1655 | 100 | Minus |
3R | 32079331 | 3R | 11161954..11162243 | 944..655 | 1424 | 99.3 | Minus |
3R | 32079331 | 3R | 11162900..11163075 | 192..17 | 880 | 100 | Minus |
3R | 32079331 | 3R | 11162710..11162844 | 326..192 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:09:04 has no hits.
BS05507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:22 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-PA | 726..1653 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:33 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-PA | 726..1653 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:14:28 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 748..1683 | 10..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:03 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 748..1683 | 10..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:03 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11161954..11162243 | 655..944 | 99 | -> | Minus |
3R | 11162314..11162643 | 325..654 | 100 | -> | Minus |
3R | 11162712..11162844 | 192..324 | 100 | -> | Minus |
3R | 11162901..11163075 | 15..191 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:14:28 Download gff for
BS05507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6988434..6988566 | 192..324 | 100 | -> | Minus |
arm_3R | 6987676..6987965 | 655..944 | 99 | -> | Minus |
arm_3R | 6988036..6988365 | 325..654 | 100 | -> | Minus |
arm_3R | 6988623..6988797 | 15..191 | 98 | -> | Minus |
BS05507.5prime Sequence
902 bp (792 high quality bases) assembled on 2005-12-02
> BS05507.5prime
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGC
CAAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGNGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCNGCTGGAATCCCGTGCTCAACTGGAGAATCGT
TG
BS05507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-PA | 1653 | CG4757-RA | 1..886 | 17..902 | 4392 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-RB | 2098 | CG4757-RB | 23..908 | 17..902 | 4408 | 99.8 | Plus |
CG4757-RA | 1729 | CG4757-RA | 23..908 | 17..902 | 4408 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11161229..11162114 | 17..902 | 4408 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:42:29 has no hits.
BS05507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:23 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:42:34 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:30 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 23..908 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:27 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 23..908 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:27 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11161229..11162114 | 17..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:30 Download gff for
BS05507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6986951..6987836 | 17..902 | 99 | | Plus |
BS05507.complete Sequence
1685 bp assembled on 2007-10-17
GenBank Submission: FJ635149
> BS05507.complete
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGC
CAAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGGGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCGGCTGGAATCCCGTGCTCAACTGGAGAATCGT
TGTGGAGAAGGATTTTGGGCAGGAGCGTTACCTCATCGAAAGTCCTTTCA
AAACAGCTCGACGTGGCGACTTTCACAAGGTAGCCCTCATCACCGGCATT
ACGGAGTTTGAGTTCCTTTCGGGCGCTTTCTTTGATCTGCGAAATGAAAG
CATTGTTAACCGCTATAATAGGGATTGGGAACACTATGCTTCTATTGCGT
TGCTCTTGGAACAAAACTCAACGCAATCGCGAGCTGCCAGTCGAGTTTTC
CGGGAAAAATATATGCCGGAAAGTTTGGACAAGCTGGAGTACCCGAAATC
ACTTAAGGGTATGGGTGAACTCTTGAGCGACGCCCTGATTGGAGTGTCCT
TCCATCGATTTCTTCAACTGATGTCCCCCCACACACCCATTTACACATAT
CTGTTCCGTTACAAGGGTAGATATACCTTCTTGAAAAATCCCGATAACCA
GCAAACCATAGGCCCCGTTCACCATGACGAGCTAATATATTTATTCCATG
TTGGACTTTTGATTCCTTTGTTGAAGCGAGAGGATCCGGAAAATTTTATG
ATCGAGCTATTGACACGTATGTGGATTGAATTTGCTCAAAAGGGTGATCC
TCACAACAAAAACGATGAATACCTGAAAGGTCTGAATTGGCCGCTATACA
ACGCGCAAGATAAAGGATATCTAGAAATTGGAAATAACCTTACAGCAAAA
TCTGGCGGTTTCTTTTTGAATCGGTATCAAATTTGGGAGGATTTATTTCC
ACTTTCAAGCTTTCACTAAAAGCTTTCTAGACCAT
BS05507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-RB | 1653 | CG4757-PB | 1..1653 | 17..1669 | 8265 | 100 | Plus |
CG4757-RA | 1653 | CG4757-PA | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-RB | 2098 | CG4757-RB | 23..1675 | 17..1669 | 8265 | 100 | Plus |
CG4757-RA | 1729 | CG4757-RA | 23..1675 | 17..1669 | 8265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11161229..11162243 | 17..1031 | 5075 | 100 | Plus |
3R | 32079331 | 3R | 11162314..11162644 | 1032..1362 | 1655 | 100 | Plus |
3R | 32079331 | 3R | 11162900..11163075 | 1494..1669 | 880 | 100 | Plus |
3R | 32079331 | 3R | 11162710..11162844 | 1360..1494 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:17 has no hits.
BS05507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:53 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 1..1653 | 17..1669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:35:01 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 28..1688 | 17..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:38 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 23..1673 | 17..1667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:04 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 28..1678 | 17..1667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:32 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4757-RA | 23..1673 | 17..1667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:32 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11161229..11162243 | 17..1031 | 100 | -> | Plus |
3R | 11162314..11162643 | 1032..1361 | 100 | -> | Plus |
3R | 11162712..11162844 | 1362..1494 | 100 | -> | Plus |
3R | 11162901..11163073 | 1495..1667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:38 Download gff for
BS05507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6986951..6987965 | 17..1031 | 100 | -> | Plus |
arm_3R | 6988036..6988365 | 1032..1361 | 100 | -> | Plus |
arm_3R | 6988434..6988566 | 1362..1494 | 100 | -> | Plus |
arm_3R | 6988623..6988795 | 1495..1667 | 100 | | Plus |
BS05507.pep Sequence
Translation from 16 to 1668
> BS05507.pep
MLMLFVVELLVLLASSSVLSIEVDTELGRVRGANLTSRLGVNFHAFRGIR
YAEPPLGDLRFVNPQPVKPWSPKIFDASEDGPMCPQPWDNMTDVSEDCLR
LNVYTKDLKGRRPVIVFLHPGGFYVFSGQSKYLAGPEHFMDRDCVLVSLN
YRLGSLGFLATGSKEAPGNAGLKDQVLALRWIQQHIQRFGGDPDSVTLLG
YSAGSISVALHMLSPMSRGLFHRGICMSAAPYGPVKYKDNDLQLAKRQAG
LLKCPQESIGEMVECMRRKPYLDYVSTYNGMFEFGWNPVLNWRIVVEKDF
GQERYLIESPFKTARRGDFHKVALITGITEFEFLSGAFFDLRNESIVNRY
NRDWEHYASIALLLEQNSTQSRAASRVFREKYMPESLDKLEYPKSLKGMG
ELLSDALIGVSFHRFLQLMSPHTPIYTYLFRYKGRYTFLKNPDNQQTIGP
VHHDELIYLFHVGLLIPLLKREDPENFMIELLTRMWIEFAQKGDPHNKND
EYLKGLNWPLYNAQDKGYLEIGNNLTAKSGGFFLNRYQIWEDLFPLSSFH
*
BS05507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4757-PB | 550 | CG4757-PB | 1..550 | 1..550 | 2929 | 100 | Plus |
CG4757-PA | 550 | CG4757-PA | 1..550 | 1..550 | 2929 | 100 | Plus |
CG4382-PB | 580 | CG4382-PB | 37..572 | 14..547 | 1217 | 44.7 | Plus |
CG3841-PB | 564 | CG3841-PB | 12..536 | 9..548 | 795 | 34.9 | Plus |
CG3841-PA | 564 | CG3841-PA | 12..536 | 9..548 | 795 | 34.9 | Plus |