Clone BS05526 Report

Search the DGRC for BS05526

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptphtf-RA
Protein status:BS05526.pep: full length peptide match
Sequenced Size:2675

Clone Sequence Records

BS05526.3prime Sequence

624 bp (562 high quality bases) assembled on 2005-12-02

> BS05526.3prime
ATGGTCTAGAAAGCTTTTACTTGATCTTGATTTTATGCAGCTTCAGTTTA
AAGCCTAAAACTTCGCTAAGCACGCCCGATAGGGCCGACAGGATTACCAC
CTTGATGGTTGTGAATAGATATGGATTGGCACTAAGGCCAGAGAGCTTGA
ATGGCGTTTCGAGTTCCTTTAGCAGATCGGCGGCCAGCTTGAGCACGCTG
TTCGACACCATCAGCTCGTCCTTTTTCTTTGGCTTCTGCTCGATCTGCAG
ATACAAGTTAATTTGCTCCGTAATCAGCACCGACACACTGCGGTACTTGT
GCTGTATCTTCTGACCTAGGGTCATGAAGCGCAGCAGAAAGATACCGATT
GTTATGGACCAGATTAGGGCCTCCAAGGTAAGGTGTGTGTGCAGATGAGC
CGAATCCTTCAGCCACTCGACGCTGAGGAAGGCCAGCAACAGGAGGGTTA
CTATGAAGGCGGCGGAAACGATGATATCCACCGATCGCTGGGGTCCGCGT
TTCTTCAAATACGACCTCACGCTCAGCCAGGTCTTGATGTTACGCACCTT
GTTCAAACGGAAGTGGGGAAGATTTGACTTTCGAGCCCTACGTGATGAAG
TTAGGTGGGAGAAGAGTTTGGCGT

BS05526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3268-PA 2643 phtf-RA 2036..2643 624..17 3040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-RA 3336 CG3268-RA 2326..2933 624..17 3040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6745251..6745738 504..17 2440 100 Minus
2R 25286936 2R 6745073..6745194 624..503 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:17:52 has no hits.

BS05526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:53 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
phtf-PA 2036..2643 17..624 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:19 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3268-PA 2036..2643 17..624 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:47:33 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 2326..2936 12..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:22 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 2326..2936 12..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:22 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6745073..6745194 503..624 100 -> Minus
2R 6745253..6745741 12..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:47:33 Download gff for BS05526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2632578..2632699 503..624 100 -> Minus
arm_2R 2632758..2633246 12..502 99   Minus

BS05526.5prime Sequence

784 bp (740 high quality bases) assembled on 2005-12-02

> BS05526.5prime
GAAGTTATCAGTCGACATGAAATTGGATGAAATAGTTGCATGGTACCAGA
AGAGAATCGGCACCTATGACAAGCAAGAATGGGAAAAGACCGTCGAACAG
AGGATATTGGACGGCTTCAATAGTGTCAATTTAAAAAACACCAAGCTGAA
GACGGAGCTAATCGATGTGGACTTGGTGCGAGGTTCCACGTTCCCTAAGG
CCAAGCCCAAGCAGTCGTTACTCACTGTGATACGCCTGGCCATTCTGCGC
TATGTCCTGCTGCCCCTCTATGCCCAGTGGTGGGTCAAGCAGACCACGCC
AAACGCCTTCGGCTTCATCCTTGTGCTTTACCTCACACAGTTAACCAACT
GGGCTATCTACGTGCTTCACAGCAGTCGCATAGTGCCCCTTGACTATGAG
AAGCCGCCAAATGGAACCCTGCTTCAGGCAGAGGCAGATGGAGATGCCTC
CGATAAGGATGCAGATAAGGAGTCCGAGGAACATGCCGCCCTCCTCAGTG
CCCTGCTTATTCCGTGCGCCCTAAGCTTGCTGATCAGTCTCATCCACTCA
CAAATTGTAGCCACTAACACCGCCTCGGGTGTCTCTGGCGGGAGTAGCAA
GAACAAGCTGCGTCGCATATCTGCAAGCTACTTAAGCGACAAAGCAGCAA
CCAGGGAGAACCGGGTGCGACGTCGCAAGAAGATTGTGCGAGTTCGACAA
GTGGAGGCTGACTTGTCCCAGGCCAGCAGTAACATATCACTTCCAAACAG
AAGAACCGCAACCAGCACAATCGAAAGTCTTCCC

BS05526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3268-PA 2643 phtf-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-RA 3336 CG3268-RA 291..1058 17..784 3810 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6743035..6743544 181..690 2550 100 Plus
2R 25286936 2R 6742840..6742982 42..184 715 100 Plus
2R 25286936 2R 6743592..6743686 690..784 445 97.9 Plus
Blast to na_te.dros performed on 2015-02-11 10:55:36 has no hits.

BS05526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:13:54 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
phtf-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:21 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3268-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:46 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 291..1058 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:15 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 291..1058 17..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:15 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6742744..6742769 17..42 100 -> Plus
2R 6742841..6742980 43..182 100 -> Plus
2R 6743037..6743544 183..690 100 -> Plus
2R 6743593..6743686 691..784 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:46 Download gff for BS05526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2630249..2630274 17..42 100 -> Plus
arm_2R 2630346..2630485 43..182 100 -> Plus
arm_2R 2630542..2631049 183..690 100 -> Plus
arm_2R 2631098..2631191 691..784 97   Plus

BS05526.complete Sequence

2675 bp assembled on 2009-08-24

GenBank Submission: KX795091

> BS05526.complete
GAAGTTATCAGTCGACATGAAATTGGATGAAATAGTTGCATGGTACCAGA
AGAGAATCGGCACCTATGACAAGCAAGAATGGGAAAAGACCGTCGAACAG
AGGATATTGGACGGCTTCAATAGTGTCAATTTAAAAAACACCAAGCTGAA
GACGGAGCTAATCGATGTGGACTTGGTGCGAGGTTCCACGTTCCCTAAGG
CCAAGCCCAAGCAGTCGTTACTCACTGTGATACGCCTGGCCATTCTGCGC
TATGTCCTGCTGCCCCTCTATGCCCAGTGGTGGGTCAAGCAGACCACGCC
AAACGCCTTCGGCTTCATCCTTGTGCTTTACCTCACACAGTTAACCAACT
GGGCTATCTACGTGCTTCACAGCAGTCGCATAGTGCCCCTTGACTATGAG
AAGCCGCCAAATGGAACCCTGCTTCAGGCAGAGGCAGATGGAGATGCCTC
CGATAAGGATGCAGATAAGGAGTCCGAGGAACATGCCGCCCTCCTCAGTG
CCCTGCTTATTCCGTGCGCCCTAAGCTTGCTGATCAGTCTCATCCACTCA
CAAATTGTAGCCACTAACACCGCCTCGGGTGTCTCTGGCGGGAGTAGCAA
GAACAAGCTGCGTCGCATATCTGCAAGCTACTTAAGCGACAAAGCAGCAA
CCAGGGAGAACCGGGTGCGACGTCGCAAGAAGATTGTGCGAGTTCGACAA
GTGGAGGCTGACTTGTCCCAGGCCAGCAGTAACATATCACTTCCAAACAG
AAGAACCGCAACCAGCACAATCGAAGTTCTTCCCAGACCGGTCACGCCTT
TGCCTTCACCAACAGTTACCTGTGCCACGGTGCCAGACCCCACCACGCCG
ACTACGCCTTCGCCATCTGTTATCAGGCGGAGCACCAACGAGGAGACCTA
TTTGACAACGACTGCAATCAGCCCACTAACGCAACCGCTGGCAGCCATAG
ACGCATGCTACGATCTCAGCAGAAAGGCAGGGGGAGCTGCTCCCGAAAGC
CCCAAAAAGCGCAACGTCAACTGGCACACGCCTATTCAGATATACGCTAC
CTACGAGCTGGGCGAAGAGCCGTGCTCCAGCAGAAAAGTCGCAGAAGAAA
GTGCGCCTGAGTCGGTTGGAGAAAGATTGTGTTCCGTCAAGCCAGACTAC
CAGACGCGTCGAAACATCGGGGAGGACGATGGCTTCGAGAGTCTGAATGG
AAAGAGCTCAAGTGGAGAGGACAACAACCATTCGCCTTTGCCAAACGCGG
TGGCTGTTGCGGCTCCACCAGCTCCTGTTCAGACCAATCAGTTGCGTCTG
CGATTAAACACAACAAACGGTGTGACCGCCAGTGCTTCTCCAACCGAGAA
GAAACCCCAGTCGCGCGGCAATGAATCCTCAACGAGTTGCGCCGAATCGG
ATGAGTGCGATGATGCCGACATTATGTCCAGTCCCGCCTCGGGCTGTAAC
CAAGAGTGCACCACTTCTGCCACCGACTGGCTGGGGGTGACGACAAATAG
CGAAGACTGCAGTTACACCTCTGATCTGGATCACTCTGACGGGGGCTTGA
AGCACACGGCCTTTAGCGACGAAGATCCTGGAGAGCTGGACATCACCCCT
ACCACTATACTAAATCCACATAGCAGCCTCGACCGTATTAGCTGCACCAT
TTGGGATCAGCGAGATGCCAAAAAGGCGCAGCTTTCCGTGCTGGAGATCG
CGTCTTGCATAATCGAACGCGTGGACTCAATGGGCGAGGCCAACGACTAC
ATCTACATAGGCGTGGTCTTCTCTTTCCTGCTCACATTGATTCCCATCTT
CTGCCGTCTCTGCGAGGTCACACTCGGGAGCGATGCAGAGAAGGCCAGTG
AGATTAGCTACTTTAACATGCCGCAGCTGCTGTGGGAGAAGTCATCGGCA
TCGCTCTTCACCCTGCTGGGCCTTGCCTTCGGCGACAGCCAGTGGGAGCG
CATGGTATTGGCTCTGGGCTTTGTCCAACGCCTTTGCCTGACCCTCATAC
TGTTCATAATATTCGCCGTTGCAGAGCGCACCTTCAAGCAACGCTTCCTT
TACGCCAAACTCTTCTCCCACCTAACTTCATCACGTAGGGCTCGAAAGTC
AAATCTTCCCCACTTCCGTTTGAACAAGGTGCGTAACATCAAGACCTGGC
TGAGCGTGAGGTCGTATTTGAAGAAACGCGGACCCCAGCGATCGGTGGAT
ATCATCGTTTCCGCCGCCTTCATAGTAACCCTCCTGTTGCTGGCCTTCCT
CAGCGTCGAGTGGCTGAAGGATTCGGCTCATCTGCACACACACCTTACCT
TGGAGGCCCTAATCTGGTCCATAACAATCGGTATCTTTCTGCTGCGCTTC
ATGACCCTAGGTCAGAAGATACAGCACAAGTACCGCAGTGTGTCGGTGCT
GATTACGGAGCAAATTAACTTGTATCTGCAGATCGAGCAGAAGCCAAAGA
AAAAGGACGAGCTGATGGTGTCGAACAGCGTGCTCAAGCTGGCCGCCGAT
CTGCTAAAGGAACTCGAAACGCCATTCAAGCTCTCTGGCCTTAGTGCCAA
TCCATATCTATTCACAACCATCAAGGTGGTAATCCTGTCGGCCCTATCGG
GCGTGCTTAGCGAAGTTTTAGGCTTTAAACTGAAGCTGCATAAAATCAAG
ATCAAGTAAAAGCTTTCTAGACCAT

BS05526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-RA 2643 CG3268-PA 1..2643 17..2659 13215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-RA 3336 CG3268-RA 291..2933 17..2659 13215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6743592..6744539 690..1637 4740 100 Plus
2R 25286936 2R 6743035..6743544 181..690 2550 100 Plus
2R 25286936 2R 6745251..6745738 2172..2659 2440 100 Plus
2R 25286936 2R 6744836..6745194 1815..2173 1795 100 Plus
2R 25286936 2R 6744599..6744779 1638..1818 905 100 Plus
2R 25286936 2R 6742840..6742982 42..184 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:30:29 has no hits.

BS05526.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:18 Download gff for BS05526.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 323..2963 17..2657 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:38 Download gff for BS05526.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 291..2931 17..2657 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:14 Download gff for BS05526.complete
Subject Subject Range Query Range Percent Splice Strand
phtf-RA 291..2931 17..2657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:14 Download gff for BS05526.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6744599..6744777 1638..1816 100 -> Plus
2R 6742744..6742769 17..42 100 -> Plus
2R 6742841..6742980 43..182 100 -> Plus
2R 6743037..6743544 183..690 100 -> Plus
2R 6743593..6744539 691..1637 100 -> Plus
2R 6744838..6745194 1817..2173 100 -> Plus
2R 6745253..6745736 2174..2657 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:38 Download gff for BS05526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2630249..2630274 17..42 100 -> Plus
arm_2R 2630346..2630485 43..182 100 -> Plus
arm_2R 2630542..2631049 183..690 100 -> Plus
arm_2R 2631098..2632044 691..1637 100 -> Plus
arm_2R 2632104..2632282 1638..1816 100 -> Plus
arm_2R 2632343..2632699 1817..2173 100 -> Plus
arm_2R 2632758..2633241 2174..2657 100   Plus

BS05526.pep Sequence

Translation from 16 to 2658

> BS05526.pep
MKLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELID
VDLVRGSTFPKAKPKQSLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGF
ILVLYLTQLTNWAIYVLHSSRIVPLDYEKPPNGTLLQAEADGDASDKDAD
KESEEHAALLSALLIPCALSLLISLIHSQIVATNTASGVSGGSSKNKLRR
ISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATS
TIEVLPRPVTPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTA
ISPLTQPLAAIDACYDLSRKAGGAAPESPKKRNVNWHTPIQIYATYELGE
EPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDGFESLNGKSSSG
EDNNHSPLPNAVAVAAPPAPVQTNQLRLRLNTTNGVTASASPTEKKPQSR
GNESSTSCAESDECDDADIMSSPASGCNQECTTSATDWLGVTTNSEDCSY
TSDLDHSDGGLKHTAFSDEDPGELDITPTTILNPHSSLDRISCTIWDQRD
AKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLCE
VTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLAL
GFVQRLCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHF
RLNKVRNIKTWLSVRSYLKKRGPQRSVDIIVSAAFIVTLLLLAFLSVEWL
KDSAHLHTHLTLEALIWSITIGIFLLRFMTLGQKIQHKYRSVSVLITEQI
NLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLSANPYLFT
TIKVVILSALSGVLSEVLGFKLKLHKIKIK*

BS05526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
phtf-PA 880 CG3268-PA 1..880 1..880 4482 100 Plus