Clone BS05535 Report

Search the DGRC for BS05535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptmbf1-RA
Protein status:BS05535.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05535.5prime Sequence

468 bp (467 high quality bases) assembled on 2005-12-02

> BS05535.5prime
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GTGAAAGCTTTCTAGACC

BS05535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..438 17..454 2190 100 Plus
CG4143-PB 438 mbf1-RB 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..688 17..456 2200 100 Plus
mbf1-RB 1648 CG4143-RB 209..648 17..456 2200 100 Plus
mbf1-RA 1085 CG4143-RA 109..548 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 141..301 805 100 Plus
3L 28110227 3L 16575717..16575871 302..456 775 100 Plus
3L 28110227 3L 16574853..16574976 17..140 620 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:33:48 has no hits.

BS05535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:14:08 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-PB 1..438 17..454 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:41 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:44 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..555 9..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:59 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..555 9..463 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:59 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 17..140 100 -> Plus
3L 16575187..16575347 141..301 100 -> Plus
3L 16575717..16575878 302..463 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:44 Download gff for BS05535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 17..140 100 -> Plus
arm_3L 16568287..16568447 141..301 100 -> Plus
arm_3L 16568817..16568978 302..463 97   Plus

BS05535.3prime Sequence

468 bp (467 high quality bases) assembled on 2005-12-02

> BS05535.3prime
ATGGTCTAGAAAGCTTTCACTTTTTACCGGGAGGTGCTATTGGTTGGCCG
CGCTCCTTGCCGCGCAGCTTAATGCCGAGAACGCGTTCCATTTTACCCAG
AATCAAGTTGTTTGGAATACCGCGACCGGCCTCGTAGTCGGTTACCACTT
GCTGCTTTTCGCAGATTTTAGTTGCCAGGTCCTTTTGGCTGAGGCCCTTG
CTCTGTCGTCCCTGCTGGATGAGCTTGCCCACATCGAGGGGAATCTTGTC
GTGGCGCAGCTCCTCGGTCTCGCGGTCTAGTTTGGCAGTGTTCTTGGTGG
TCACATGCTGCTTGTTGGTGCCAGCACCATACTTCTGTTGGGTATCCACG
GCGACTCCTTGACGGCGTGCCTGGTTGACCGCCGATTCCGTCTTGAGGGT
CGACGATTTCGGTGCTTTCTTCCGAAGAACAGTCACAGAGTCCCAGTCCG
ACATGTCGACTGATAACT

BS05535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..438 454..17 2190 100 Minus
CG4143-PB 438 mbf1-RB 1..438 454..17 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..688 454..15 2200 100 Minus
mbf1-RB 1648 CG4143-RB 209..648 454..15 2200 100 Minus
mbf1-RA 1085 CG4143-RA 109..548 454..15 2200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 330..170 805 100 Minus
3L 28110227 3L 16575717..16575871 169..15 775 100 Minus
3L 28110227 3L 16574853..16574976 454..331 620 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:19:35 has no hits.

BS05535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:14:07 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-PB 1..438 17..454 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:40 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 17..454 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:47:51 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..555 8..462 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:41 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..555 8..462 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:41 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16575717..16575878 8..169 97   Minus
3L 16574853..16574976 331..454 100 -> Minus
3L 16575187..16575347 170..330 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:47:51 Download gff for BS05535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 331..454 100 -> Minus
arm_3L 16568287..16568447 170..330 100 -> Minus
arm_3L 16568817..16568978 8..169 97   Minus

BS05535.complete Sequence

470 bp (470 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635150

> BS05535.complete
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GTGAAAGCTTTCTAGACCAT

BS05535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RE 567 CG4143-PE 1..440 17..456 2200 100 Plus
mbf1-RC 438 CG4143-PC 1..438 17..454 2190 100 Plus
mbf1-RB 438 CG4143-PB 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..688 17..456 2200 100 Plus
mbf1-RB 1648 CG4143-RB 209..648 17..456 2200 100 Plus
mbf1-RA 1085 CG4143-RA 109..548 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 141..301 805 100 Plus
3L 28110227 3L 16575717..16575871 302..456 775 100 Plus
3L 28110227 3L 16574853..16574976 17..140 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:08 has no hits.

BS05535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:53 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:47 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 79..525 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:52 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 109..545 17..453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:54 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 79..525 17..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:21 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 109..545 17..453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:21 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16575187..16575347 141..301 100 -> Plus
3L 16575717..16575868 302..453 100   Plus
3L 16574853..16574976 17..140 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:52 Download gff for BS05535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 17..140 100 -> Plus
arm_3L 16568287..16568447 141..301 100 -> Plus
arm_3L 16568817..16568968 302..453 100   Plus

BS05535.pep Sequence

Translation from 16 to 453

> BS05535.pep
MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQH
VTTKNTAKLDRETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEK
QQVVTDYEAGRGIPNNLILGKMERVLGIKLRGKERGQPIAPPGKK*

BS05535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-PC 145 CG4143-PC 1..145 1..145 738 100 Plus
mbf1-PB 145 CG4143-PB 1..145 1..145 738 100 Plus
mbf1-PA 145 CG4143-PA 1..145 1..145 738 100 Plus
mbf1-PD 145 CG4143-PD 1..145 1..145 738 100 Plus
mbf1-PE 188 CG4143-PE 1..145 1..145 738 100 Plus