Clone Sequence Records
BS05535.5prime Sequence
468 bp (467 high quality bases) assembled on 2005-12-02
> BS05535.5prime
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GTGAAAGCTTTCTAGACC
BS05535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4143-PA | 438 | mbf1-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
CG4143-PB | 438 | mbf1-RB | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..688 | 17..456 | 2200 | 100 | Plus |
mbf1-RB | 1648 | CG4143-RB | 209..648 | 17..456 | 2200 | 100 | Plus |
mbf1-RA | 1085 | CG4143-RA | 109..548 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 141..301 | 805 | 100 | Plus |
3L | 28110227 | 3L | 16575717..16575871 | 302..456 | 775 | 100 | Plus |
3L | 28110227 | 3L | 16574853..16574976 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:33:48 has no hits.
BS05535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:14:08 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-PB | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:41 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4143-PB | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:44 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..555 | 9..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:37:59 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..555 | 9..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:59 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16574853..16574976 | 17..140 | 100 | -> | Plus |
3L | 16575187..16575347 | 141..301 | 100 | -> | Plus |
3L | 16575717..16575878 | 302..463 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:44 Download gff for
BS05535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 17..140 | 100 | -> | Plus |
arm_3L | 16568287..16568447 | 141..301 | 100 | -> | Plus |
arm_3L | 16568817..16568978 | 302..463 | 97 | | Plus |
BS05535.3prime Sequence
468 bp (467 high quality bases) assembled on 2005-12-02
> BS05535.3prime
ATGGTCTAGAAAGCTTTCACTTTTTACCGGGAGGTGCTATTGGTTGGCCG
CGCTCCTTGCCGCGCAGCTTAATGCCGAGAACGCGTTCCATTTTACCCAG
AATCAAGTTGTTTGGAATACCGCGACCGGCCTCGTAGTCGGTTACCACTT
GCTGCTTTTCGCAGATTTTAGTTGCCAGGTCCTTTTGGCTGAGGCCCTTG
CTCTGTCGTCCCTGCTGGATGAGCTTGCCCACATCGAGGGGAATCTTGTC
GTGGCGCAGCTCCTCGGTCTCGCGGTCTAGTTTGGCAGTGTTCTTGGTGG
TCACATGCTGCTTGTTGGTGCCAGCACCATACTTCTGTTGGGTATCCACG
GCGACTCCTTGACGGCGTGCCTGGTTGACCGCCGATTCCGTCTTGAGGGT
CGACGATTTCGGTGCTTTCTTCCGAAGAACAGTCACAGAGTCCCAGTCCG
ACATGTCGACTGATAACT
BS05535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4143-PA | 438 | mbf1-RA | 1..438 | 454..17 | 2190 | 100 | Minus |
CG4143-PB | 438 | mbf1-RB | 1..438 | 454..17 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..688 | 454..15 | 2200 | 100 | Minus |
mbf1-RB | 1648 | CG4143-RB | 209..648 | 454..15 | 2200 | 100 | Minus |
mbf1-RA | 1085 | CG4143-RA | 109..548 | 454..15 | 2200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 330..170 | 805 | 100 | Minus |
3L | 28110227 | 3L | 16575717..16575871 | 169..15 | 775 | 100 | Minus |
3L | 28110227 | 3L | 16574853..16574976 | 454..331 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:19:35 has no hits.
BS05535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:14:07 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-PB | 1..438 | 17..454 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:43:40 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4143-PB | 1..438 | 17..454 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:47:51 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..555 | 8..462 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:41 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..555 | 8..462 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:41 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16575717..16575878 | 8..169 | 97 | | Minus |
3L | 16574853..16574976 | 331..454 | 100 | -> | Minus |
3L | 16575187..16575347 | 170..330 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:47:51 Download gff for
BS05535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 331..454 | 100 | -> | Minus |
arm_3L | 16568287..16568447 | 170..330 | 100 | -> | Minus |
arm_3L | 16568817..16568978 | 8..169 | 97 | | Minus |
BS05535.complete Sequence
470 bp (470 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635150
> BS05535.complete
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GTGAAAGCTTTCTAGACCAT
BS05535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RE | 567 | CG4143-PE | 1..440 | 17..456 | 2200 | 100 | Plus |
mbf1-RC | 438 | CG4143-PC | 1..438 | 17..454 | 2190 | 100 | Plus |
mbf1-RB | 438 | CG4143-PB | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..688 | 17..456 | 2200 | 100 | Plus |
mbf1-RB | 1648 | CG4143-RB | 209..648 | 17..456 | 2200 | 100 | Plus |
mbf1-RA | 1085 | CG4143-RA | 109..548 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 141..301 | 805 | 100 | Plus |
3L | 28110227 | 3L | 16575717..16575871 | 302..456 | 775 | 100 | Plus |
3L | 28110227 | 3L | 16574853..16574976 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:08 has no hits.
BS05535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:53 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:47 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 79..525 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:52 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 109..545 | 17..453 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:54 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 79..525 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:21 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 109..545 | 17..453 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:21 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16575187..16575347 | 141..301 | 100 | -> | Plus |
3L | 16575717..16575868 | 302..453 | 100 | | Plus |
3L | 16574853..16574976 | 17..140 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:52 Download gff for
BS05535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 17..140 | 100 | -> | Plus |
arm_3L | 16568287..16568447 | 141..301 | 100 | -> | Plus |
arm_3L | 16568817..16568968 | 302..453 | 100 | | Plus |
BS05535.pep Sequence
Translation from 16 to 453
> BS05535.pep
MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQH
VTTKNTAKLDRETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEK
QQVVTDYEAGRGIPNNLILGKMERVLGIKLRGKERGQPIAPPGKK*
BS05535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-PC | 145 | CG4143-PC | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PB | 145 | CG4143-PB | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PA | 145 | CG4143-PA | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PD | 145 | CG4143-PD | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PE | 188 | CG4143-PE | 1..145 | 1..145 | 738 | 100 | Plus |