Clone BS05568 Report

Search the DGRC for BS05568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG3436-RA
Protein status:BS05568.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05568.3prime Sequence

815 bp (740 high quality bases) assembled on 2005-12-02

> BS05568.3prime
ATGGTCTAGAAAGCTTTCATTCATCGATCTCTCCCAGATACAAAGTCTTA
TCGCTGGATCCAGATAGAATCAGGGGTTCTTTTGGGCTGAAATCCACGGC
ATTGACACTGCCATTGTGTCCGGGCAGCTTGTAAAGAATTCTCCTTGTAT
TTACATCCCAAATATAGACATGCCGATCGGCGGAACCCGATGTTATTTTA
TCGCTTCCCGGCGACCAAGCGCATCTCAGCAGATTCTTCTCAAAATTGTG
CTGATGGCCTTGGAATACCTTCACACATCTTTCCCCGGGTGCATAAGGTC
TCACGTCCCACACCCTCAAGGTGTTATCCATGGCATTTGTCAAGATAAAG
TCTCCTTCGGGGGACAAGGACATTCCGGTAATCGTATCCGAATGCCCTCG
CAGATGGTGCAAGACAGCCTGTTTTCGAATGTCCCAGATTTTGACTTCGT
TGTCGATCCCGCCGCTAATTACTTGTTCTCCAGTGTCACCAAAACAAACA
GCTGTGACTTGAAAAGGGGATTCCAAAGTGTGTGCCGCGTGTTTTTTCCT
GGCGTCCCAGATTTTTATGGTGCGATCATCGCTTCCCGAGCAGAGGAGCT
GTTGACCCCTACGCGAGCCCTGAACGCTGTTCACGAAGTTGCCATGCCCC
TTGAACCGCCGTTGCCGCTGGCCCGTGGCTATGTCCCAAAAGGCCAGAGT
TTTATCAGTGGAGCAGGTAAAAATGTGCGATCCATCCGGCGTAAAGTGAG
CTTCCATAACAGCACCGCTGTGTCCCGACATGGCCATCACATTCTCGCAG
TCTTCGTACACTTGC

BS05568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 246..1044 815..17 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 458..1256 815..17 3995 100 Minus
CG3436-RA 1261 CG3436-RA 338..1136 815..17 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156743..157541 815..17 3995 100 Minus
Blast to na_te.dros performed 2015-02-10 17:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 1204..1246 44..1 109 75 Minus

BS05568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:16 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 246..1044 17..815 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:12 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 246..1044 17..815 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:39 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 338..1143 10..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:42 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 338..1143 10..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 156743..157548 10..815 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:39 Download gff for BS05568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156743..157548 10..815 99   Minus

BS05568.5prime Sequence

955 bp (835 high quality bases) assembled on 2005-11-29

> BS05568.5prime
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAAGCGATAAATAACATCGGGTTCCCGCGA
TCGGCATGTCTATATTTTGGGATGAAATACAAGGGAGAATCTTTACAAGC
TGCCC

BS05568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 1..856 17..872 4280 100 Plus
CG3436-PB 246 CG3436-RB 1..238 17..254 1190 100 Plus
CG3436-PA 1044 CG3436-RA 863..901 879..917 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 213..1151 17..955 4530 99.2 Plus
CG3436-RA 1261 CG3436-RA 93..1031 17..955 4530 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157436 255..955 3250 97.6 Plus
2L 23513712 2L 156422..156552 124..254 655 100 Plus
2L 23513712 2L 156241..156349 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:26:30 has no hits.

BS05568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:17 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:13 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 1..939 17..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:39 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1031 17..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:19 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1031 17..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:19 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 156241..156348 17..124 100 -> Plus
2L 156423..156552 125..254 100 -> Plus
2L 156736..157436 255..955 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:39 Download gff for BS05568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156241..156348 17..124 100 -> Plus
arm_2L 156423..156552 125..254 100 -> Plus
arm_2L 156736..157436 255..955 98   Plus

BS05568.complete Sequence

1076 bp (1076 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635151

> BS05568.complete
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAGCGATAAAATAACATCGGGTTCCGCCGA
TCGGCATGTCTATATTTGGGATGTAAATACAAGGAGAATTCTTTACAAGC
TGCCCGGACACAATGGCAGTGTCAATGCCGTGGATTTCAGCCCAAAAGAA
CCCCTGATTCTATCTGGATCCAGCGATAAGACTTTGTATCTGGGAGAGAT
CGATGAATGAAAGCTTTCTAGACCAT

BS05568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1044 CG3436-PC 1..1044 17..1060 5220 100 Plus
CG3436-RA 1044 CG3436-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 213..1256 17..1060 5220 100 Plus
CG3436-RA 1261 CG3436-RA 93..1136 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157541 255..1060 4030 100 Plus
2L 23513712 2L 156422..156552 124..254 655 100 Plus
2L 23513712 2L 156241..156349 17..125 545 100 Plus
Blast to na_te.dros performed 2014-11-28 00:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 1204..1246 1033..1076 109 75 Plus

BS05568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:55 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:49 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 213..1263 17..1067 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:34 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1135 17..1059 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:55 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 213..1263 17..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:46 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1135 17..1059 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:46 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
2L 156241..156348 17..124 100 -> Plus
2L 156423..156552 125..254 100 -> Plus
2L 156736..157540 255..1059 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:34 Download gff for BS05568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156241..156348 17..124 100 -> Plus
arm_2L 156423..156552 125..254 100 -> Plus
arm_2L 156736..157540 255..1059 100   Plus

BS05568.pep Sequence

Translation from 16 to 1059

> BS05568.pep
MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQ
LEGHEGEIFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGA
VMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSR
RGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISG
GIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRV
WDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYI
WDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDE*

BS05568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PC 347 CG3436-PC 1..347 1..347 1852 100 Plus
CG3436-PA 347 CG3436-PA 1..347 1..347 1852 100 Plus
wds-PB 361 CG17437-PB 68..360 51..346 391 33.2 Plus
wds-PA 361 CG17437-PA 68..360 51..346 391 33.2 Plus
Lis-1-PG 411 CG8440-PG 146..409 51..344 310 26.9 Plus
wds-PB 361 CG17437-PB 110..361 51..305 230 25.3 Plus
wds-PA 361 CG17437-PA 110..361 51..305 230 25.3 Plus