Clone Sequence Records
BS05568.3prime Sequence
815 bp (740 high quality bases) assembled on 2005-12-02
> BS05568.3prime
ATGGTCTAGAAAGCTTTCATTCATCGATCTCTCCCAGATACAAAGTCTTA
TCGCTGGATCCAGATAGAATCAGGGGTTCTTTTGGGCTGAAATCCACGGC
ATTGACACTGCCATTGTGTCCGGGCAGCTTGTAAAGAATTCTCCTTGTAT
TTACATCCCAAATATAGACATGCCGATCGGCGGAACCCGATGTTATTTTA
TCGCTTCCCGGCGACCAAGCGCATCTCAGCAGATTCTTCTCAAAATTGTG
CTGATGGCCTTGGAATACCTTCACACATCTTTCCCCGGGTGCATAAGGTC
TCACGTCCCACACCCTCAAGGTGTTATCCATGGCATTTGTCAAGATAAAG
TCTCCTTCGGGGGACAAGGACATTCCGGTAATCGTATCCGAATGCCCTCG
CAGATGGTGCAAGACAGCCTGTTTTCGAATGTCCCAGATTTTGACTTCGT
TGTCGATCCCGCCGCTAATTACTTGTTCTCCAGTGTCACCAAAACAAACA
GCTGTGACTTGAAAAGGGGATTCCAAAGTGTGTGCCGCGTGTTTTTTCCT
GGCGTCCCAGATTTTTATGGTGCGATCATCGCTTCCCGAGCAGAGGAGCT
GTTGACCCCTACGCGAGCCCTGAACGCTGTTCACGAAGTTGCCATGCCCC
TTGAACCGCCGTTGCCGCTGGCCCGTGGCTATGTCCCAAAAGGCCAGAGT
TTTATCAGTGGAGCAGGTAAAAATGTGCGATCCATCCGGCGTAAAGTGAG
CTTCCATAACAGCACCGCTGTGTCCCGACATGGCCATCACATTCTCGCAG
TCTTCGTACACTTGC
BS05568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PA | 1044 | CG3436-RA | 246..1044 | 815..17 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 458..1256 | 815..17 | 3995 | 100 | Minus |
CG3436-RA | 1261 | CG3436-RA | 338..1136 | 815..17 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156743..157541 | 815..17 | 3995 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dm88 | 4558 | Dm88 DM88 4558bp | 1204..1246 | 44..1 | 109 | 75 | Minus |
BS05568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:16 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 246..1044 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:12 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 246..1044 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:40:39 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 338..1143 | 10..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:42 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 338..1143 | 10..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:42 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156743..157548 | 10..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:40:39 Download gff for
BS05568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156743..157548 | 10..815 | 99 | | Minus |
BS05568.5prime Sequence
955 bp (835 high quality bases) assembled on 2005-11-29
> BS05568.5prime
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAAGCGATAAATAACATCGGGTTCCCGCGA
TCGGCATGTCTATATTTTGGGATGAAATACAAGGGAGAATCTTTACAAGC
TGCCC
BS05568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PA | 1044 | CG3436-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
CG3436-PB | 246 | CG3436-RB | 1..238 | 17..254 | 1190 | 100 | Plus |
CG3436-PA | 1044 | CG3436-RA | 863..901 | 879..917 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 213..1151 | 17..955 | 4530 | 99.2 | Plus |
CG3436-RA | 1261 | CG3436-RA | 93..1031 | 17..955 | 4530 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156736..157436 | 255..955 | 3250 | 97.6 | Plus |
2L | 23513712 | 2L | 156422..156552 | 124..254 | 655 | 100 | Plus |
2L | 23513712 | 2L | 156241..156349 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:26:30 has no hits.
BS05568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:17 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:13 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 1..939 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:39 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1031 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:19 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1031 | 17..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:19 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156241..156348 | 17..124 | 100 | -> | Plus |
2L | 156423..156552 | 125..254 | 100 | -> | Plus |
2L | 156736..157436 | 255..955 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:39 Download gff for
BS05568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156241..156348 | 17..124 | 100 | -> | Plus |
arm_2L | 156423..156552 | 125..254 | 100 | -> | Plus |
arm_2L | 156736..157436 | 255..955 | 98 | | Plus |
BS05568.complete Sequence
1076 bp (1076 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635151
> BS05568.complete
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAGCGATAAAATAACATCGGGTTCCGCCGA
TCGGCATGTCTATATTTGGGATGTAAATACAAGGAGAATTCTTTACAAGC
TGCCCGGACACAATGGCAGTGTCAATGCCGTGGATTTCAGCCCAAAAGAA
CCCCTGATTCTATCTGGATCCAGCGATAAGACTTTGTATCTGGGAGAGAT
CGATGAATGAAAGCTTTCTAGACCAT
BS05568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1044 | CG3436-PC | 1..1044 | 17..1060 | 5220 | 100 | Plus |
CG3436-RA | 1044 | CG3436-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 213..1256 | 17..1060 | 5220 | 100 | Plus |
CG3436-RA | 1261 | CG3436-RA | 93..1136 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156736..157541 | 255..1060 | 4030 | 100 | Plus |
2L | 23513712 | 2L | 156422..156552 | 124..254 | 655 | 100 | Plus |
2L | 23513712 | 2L | 156241..156349 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dm88 | 4558 | Dm88 DM88 4558bp | 1204..1246 | 1033..1076 | 109 | 75 | Plus |
BS05568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:55 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:49 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 213..1263 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:34 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1135 | 17..1059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:55 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 213..1263 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:46 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1135 | 17..1059 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:46 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156241..156348 | 17..124 | 100 | -> | Plus |
2L | 156423..156552 | 125..254 | 100 | -> | Plus |
2L | 156736..157540 | 255..1059 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:34 Download gff for
BS05568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156241..156348 | 17..124 | 100 | -> | Plus |
arm_2L | 156423..156552 | 125..254 | 100 | -> | Plus |
arm_2L | 156736..157540 | 255..1059 | 100 | | Plus |
BS05568.pep Sequence
Translation from 16 to 1059
> BS05568.pep
MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQ
LEGHEGEIFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGA
VMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSR
RGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISG
GIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRV
WDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYI
WDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDE*
BS05568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PC | 347 | CG3436-PC | 1..347 | 1..347 | 1852 | 100 | Plus |
CG3436-PA | 347 | CG3436-PA | 1..347 | 1..347 | 1852 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 68..360 | 51..346 | 391 | 33.2 | Plus |
wds-PA | 361 | CG17437-PA | 68..360 | 51..346 | 391 | 33.2 | Plus |
Lis-1-PG | 411 | CG8440-PG | 146..409 | 51..344 | 310 | 26.9 | Plus |
wds-PB | 361 | CG17437-PB | 110..361 | 51..305 | 230 | 25.3 | Plus |
wds-PA | 361 | CG17437-PA | 110..361 | 51..305 | 230 | 25.3 | Plus |