Clone Sequence Records
BS05574.3prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-02
> BS05574.3prime
ATGGTCTAGAAAGCTTTTATAGCTCCTCGTCCTCGTCGGGCAGTGCGGTC
GCCTGGGCCTCCTGCAAGTCACGCTCGATCTGCGCCTGCCAATCCTTATC
CATCTTAACCTCGGGCGGCAGCAGGGCTGGCATGGCGACAAACTCCAGGT
TGGGATCACCAACCAGCTTGCGCGCCAGCCAAAGGAATGGTTTCTCGAAG
TTGTAGTTCGATTTGGCAGAAATATCGTAATACTGCAAGTTCTTCTTTCG
GTGGAAGACGATGCTCTTCGCTTTCACCTTGCGATCCTTGATATCGACTT
TGTTGCCACAGAGGACGATTGGTATGTTCTCGCAGACGCGGACTAGATCG
CGATGCCAGTTGGGCACGTTCTTGTACGTGACACGCGAGGTAACATCGAA
CATGATGACGGCACACTGGCCCTGAATGTAGTAGCCATCGCGCAGCCCGC
CGAACTTCTCCTGGCCAGCGGTATCCCACACATTGAAACGGATGGCGCCA
CGATTGGTATGGAAGATCAATGGATGCACCTCCACGCCCAGTGTGGCCAC
GTACTTCTTCTCGAACTCACCGGTCATGTGCCGCTTGACAAAGGTGGTCT
TGCCAGTGCCGCCATCGCCGACTAGCACGCACTTGAATGTGGGTATATCC
TGACCTTCCTGAGCCATGTCGACTGATAACT
BS05574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1404-PB | 651 | ran-RB | 1..651 | 667..17 | 3230 | 99.8 | Minus |
CG1404-PA | 651 | ran-RA | 1..651 | 667..17 | 3230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..933 | 667..17 | 3240 | 99.8 | Minus |
Ran-RC | 1581 | CG1404-RC | 134..784 | 667..17 | 3240 | 99.8 | Minus |
Ran-RA | 1667 | CG1404-RA | 220..870 | 667..17 | 3240 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 233..667 | 2160 | 99.8 | Plus |
X | 23542271 | X | 11145649..11145867 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:11:40 has no hits.
BS05574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:29 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-PA | 1..651 | 17..667 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:31 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1404-PA | 1..651 | 17..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:06 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 141..799 | 13..674 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:28 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 214..872 | 13..674 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:28 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145647..11145864 | 13..232 | 99 | <- | Plus |
X | 11145943..11146380 | 233..674 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:06 Download gff for
BS05574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039680..11039897 | 13..232 | 99 | <- | Plus |
arm_X | 11039976..11040413 | 233..674 | 98 | | Plus |
BS05574.5prime Sequence
681 bp (680 high quality bases) assembled on 2005-11-29
> BS05574.5prime
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTATAAAAGCTTTCTAGACC
BS05574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1404-PB | 651 | ran-RB | 1..651 | 17..667 | 3230 | 99.8 | Plus |
CG1404-PA | 651 | ran-RA | 1..651 | 17..667 | 3230 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..933 | 17..667 | 3240 | 99.8 | Plus |
Ran-RC | 1581 | CG1404-RC | 134..784 | 17..667 | 3240 | 99.8 | Plus |
Ran-RA | 1667 | CG1404-RA | 220..870 | 17..667 | 3240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 451..17 | 2160 | 99.8 | Minus |
X | 23542271 | X | 11145649..11145867 | 667..449 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:55:31 has no hits.
BS05574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:30 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:32 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1404-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:25 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 141..799 | 10..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:52 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 214..872 | 10..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:52 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145647..11145864 | 452..671 | 99 | <- | Minus |
X | 11145943..11146380 | 10..451 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:25 Download gff for
BS05574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039680..11039897 | 452..671 | 99 | <- | Minus |
arm_X | 11039976..11040413 | 10..451 | 98 | | Minus |
BS05574.complete Sequence
683 bp (683 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635152
> BS05574.complete
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTATAAAAGCTTTCTAGACCAT
BS05574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 651 | CG1404-PD | 1..651 | 17..667 | 3240 | 99.8 | Plus |
Ran-RC | 651 | CG1404-PC | 1..651 | 17..667 | 3240 | 99.8 | Plus |
Ran-RA | 651 | CG1404-PA | 1..651 | 17..667 | 3240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..933 | 17..667 | 3240 | 99.8 | Plus |
Ran-RC | 1581 | CG1404-RC | 134..784 | 17..667 | 3240 | 99.8 | Plus |
Ran-RA | 1667 | CG1404-RA | 220..870 | 17..667 | 3240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 451..17 | 2160 | 99.8 | Minus |
X | 23542271 | X | 11145649..11145867 | 667..449 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:15:11 has no hits.
BS05574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:34 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:39 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 196..854 | 10..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:54 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 147..795 | 17..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:34 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 196..854 | 10..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:54 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 220..868 | 17..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:54 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145651..11145864 | 452..665 | 100 | <- | Minus |
X | 11145943..11146377 | 17..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:54 Download gff for
BS05574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039684..11039897 | 452..665 | 100 | <- | Minus |
arm_X | 11039976..11040410 | 17..451 | 99 | | Minus |
BS05574.pep Sequence
Translation from 16 to 666
> BS05574.pep
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEEL*
BS05574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-PD | 216 | CG1404-PD | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PC | 216 | CG1404-PC | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PA | 216 | CG1404-PA | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PB | 216 | CG1404-PB | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-like-PA | 217 | CG7815-PA | 11..210 | 11..210 | 675 | 61.5 | Plus |