Clone BS05574 Report

Search the DGRC for BS05574

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptRan-RA
Protein status:BS05574.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05574.3prime Sequence

681 bp (680 high quality bases) assembled on 2005-12-02

> BS05574.3prime
ATGGTCTAGAAAGCTTTTATAGCTCCTCGTCCTCGTCGGGCAGTGCGGTC
GCCTGGGCCTCCTGCAAGTCACGCTCGATCTGCGCCTGCCAATCCTTATC
CATCTTAACCTCGGGCGGCAGCAGGGCTGGCATGGCGACAAACTCCAGGT
TGGGATCACCAACCAGCTTGCGCGCCAGCCAAAGGAATGGTTTCTCGAAG
TTGTAGTTCGATTTGGCAGAAATATCGTAATACTGCAAGTTCTTCTTTCG
GTGGAAGACGATGCTCTTCGCTTTCACCTTGCGATCCTTGATATCGACTT
TGTTGCCACAGAGGACGATTGGTATGTTCTCGCAGACGCGGACTAGATCG
CGATGCCAGTTGGGCACGTTCTTGTACGTGACACGCGAGGTAACATCGAA
CATGATGACGGCACACTGGCCCTGAATGTAGTAGCCATCGCGCAGCCCGC
CGAACTTCTCCTGGCCAGCGGTATCCCACACATTGAAACGGATGGCGCCA
CGATTGGTATGGAAGATCAATGGATGCACCTCCACGCCCAGTGTGGCCAC
GTACTTCTTCTCGAACTCACCGGTCATGTGCCGCTTGACAAAGGTGGTCT
TGCCAGTGCCGCCATCGCCGACTAGCACGCACTTGAATGTGGGTATATCC
TGACCTTCCTGAGCCATGTCGACTGATAACT

BS05574.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1404-PB 651 ran-RB 1..651 667..17 3230 99.8 Minus
CG1404-PA 651 ran-RA 1..651 667..17 3230 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..933 667..17 3240 99.8 Minus
Ran-RC 1581 CG1404-RC 134..784 667..17 3240 99.8 Minus
Ran-RA 1667 CG1404-RA 220..870 667..17 3240 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 233..667 2160 99.8 Plus
X 23542271 X 11145649..11145867 17..235 1095 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:11:40 has no hits.

BS05574.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:29 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
ran-PA 1..651 17..667 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:31 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1404-PA 1..651 17..667 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:12:06 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 141..799 13..674 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:28 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 214..872 13..674 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:28 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11145647..11145864 13..232 99 <- Plus
X 11145943..11146380 233..674 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:12:06 Download gff for BS05574.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039680..11039897 13..232 99 <- Plus
arm_X 11039976..11040413 233..674 98   Plus

BS05574.5prime Sequence

681 bp (680 high quality bases) assembled on 2005-11-29

> BS05574.5prime
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTATAAAAGCTTTCTAGACC

BS05574.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1404-PB 651 ran-RB 1..651 17..667 3230 99.8 Plus
CG1404-PA 651 ran-RA 1..651 17..667 3230 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..933 17..667 3240 99.8 Plus
Ran-RC 1581 CG1404-RC 134..784 17..667 3240 99.8 Plus
Ran-RA 1667 CG1404-RA 220..870 17..667 3240 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 451..17 2160 99.8 Minus
X 23542271 X 11145649..11145867 667..449 1095 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:55:31 has no hits.

BS05574.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:30 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
ran-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:32 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1404-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:25 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 141..799 10..671 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:52 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 214..872 10..671 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:52 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11145647..11145864 452..671 99 <- Minus
X 11145943..11146380 10..451 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:25 Download gff for BS05574.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039680..11039897 452..671 99 <- Minus
arm_X 11039976..11040413 10..451 98   Minus

BS05574.complete Sequence

683 bp (683 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635152

> BS05574.complete
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTATAAAAGCTTTCTAGACCAT

BS05574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 651 CG1404-PD 1..651 17..667 3240 99.8 Plus
Ran-RC 651 CG1404-PC 1..651 17..667 3240 99.8 Plus
Ran-RA 651 CG1404-PA 1..651 17..667 3240 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..933 17..667 3240 99.8 Plus
Ran-RC 1581 CG1404-RC 134..784 17..667 3240 99.8 Plus
Ran-RA 1667 CG1404-RA 220..870 17..667 3240 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 451..17 2160 99.8 Minus
X 23542271 X 11145649..11145867 667..449 1095 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:15:11 has no hits.

BS05574.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:34 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:39 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 196..854 10..671 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:54 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 147..795 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:34 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 196..854 10..671 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:54 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 220..868 17..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:54 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
X 11145651..11145864 452..665 100 <- Minus
X 11145943..11146377 17..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:54 Download gff for BS05574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039684..11039897 452..665 100 <- Minus
arm_X 11039976..11040410 17..451 99   Minus

BS05574.pep Sequence

Translation from 16 to 666

> BS05574.pep
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEEL*

BS05574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-PD 216 CG1404-PD 1..216 1..216 1155 100 Plus
Ran-PC 216 CG1404-PC 1..216 1..216 1155 100 Plus
Ran-PA 216 CG1404-PA 1..216 1..216 1155 100 Plus
Ran-PB 216 CG1404-PB 1..216 1..216 1155 100 Plus
Ran-like-PA 217 CG7815-PA 11..210 11..210 675 61.5 Plus