Clone Sequence Records
BS05582.3prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-02
> BS05582.3prime
ATGGTCTAGAAAGCTTTTAAGCTTCGGCCTCAACCTCCTCCTTCACCTTG
GCATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTC
CTCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGA
AGTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTAT
TTGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTT
AACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGT
GTTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATAT
TGTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCT
GGGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGC
GTTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAAC
CTGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTT
GGCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCT
CGATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGACT
GATAACT
BS05582.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7178-PD | 627 | wupA-RD | 1..627 | 643..17 | 3135 | 100 | Minus |
CG7178-PE | 627 | wupA-RE | 1..627 | 643..17 | 3135 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 1..279 | 643..365 | 1345 | 99.2 | Minus |
CG7178-PF | 627 | wupA-RF | 1..279 | 643..365 | 1345 | 99.2 | Minus |
CG7178-PA | 627 | wupA-RA | 1..268 | 643..376 | 1340 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 1..268 | 643..376 | 1340 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 367..627 | 277..17 | 1305 | 100 | Minus |
CG7178-PF | 627 | wupA-RF | 367..627 | 277..17 | 1305 | 100 | Minus |
CG7178-PA | 627 | wupA-RA | 367..627 | 277..17 | 1305 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 367..627 | 277..17 | 1305 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 550..810 | 277..17 | 1305 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 196..462 | 631..365 | 1285 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..736 | 643..17 | 3135 | 100 | Minus |
wupA-RD | 1257 | CG7178-RD | 238..864 | 643..17 | 3135 | 100 | Minus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 643..87 | 2785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 89..230 | 710 | 100 | Plus |
X | 23542271 | X | 18113447..18113577 | 500..630 | 655 | 100 | Plus |
X | 23542271 | X | 18113258..18113382 | 376..500 | 625 | 100 | Plus |
X | 23542271 | X | 18110504..18110606 | 275..377 | 515 | 100 | Plus |
X | 23542271 | X | 18105961..18106034 | 17..90 | 370 | 100 | Plus |
X | 23542271 | X | 18106888..18106933 | 231..276 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:49 has no hits.
BS05582.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:46 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-PD | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:54 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7178-PE | 1..627 | 17..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:59 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 136..772 | 9..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:52 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 233..869 | 9..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:52 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18106681..18106822 | 89..230 | 100 | <- | Plus |
X | 18113258..18113381 | 376..499 | 100 | <- | Plus |
X | 18106888..18106931 | 231..274 | 100 | <- | Plus |
X | 18110504..18110604 | 275..375 | 100 | <- | Plus |
X | 18113447..18113575 | 500..628 | 100 | <- | Plus |
X | 18105956..18106032 | 9..88 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:59 Download gff for
BS05582.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17999989..18000065 | 9..88 | 95 | <- | Plus |
arm_X | 18000714..18000855 | 89..230 | 100 | <- | Plus |
arm_X | 18000921..18000964 | 231..274 | 100 | <- | Plus |
arm_X | 18004537..18004637 | 275..375 | 100 | <- | Plus |
arm_X | 18007291..18007414 | 376..499 | 100 | <- | Plus |
arm_X | 18007480..18007608 | 500..628 | 100 | <- | Plus |
BS05582.5prime Sequence
657 bp (656 high quality bases) assembled on 2005-12-02
> BS05582.5prime
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAAAGCTTT
CTAGACC
BS05582.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7178-PD | 627 | wupA-RD | 1..627 | 17..643 | 3135 | 100 | Plus |
CG7178-PE | 627 | wupA-RE | 1..627 | 17..643 | 3135 | 100 | Plus |
CG7178-PC | 627 | wupA-RC | 1..279 | 17..295 | 1345 | 99.2 | Plus |
CG7178-PF | 627 | wupA-RF | 1..279 | 17..295 | 1345 | 99.2 | Plus |
CG7178-PA | 627 | wupA-RA | 1..268 | 17..284 | 1340 | 100 | Plus |
CG7178-PB | 627 | wupA-RB | 1..268 | 17..284 | 1340 | 100 | Plus |
CG7178-PC | 627 | wupA-RC | 367..627 | 383..643 | 1305 | 100 | Plus |
CG7178-PF | 627 | wupA-RF | 367..627 | 383..643 | 1305 | 100 | Plus |
CG7178-PA | 627 | wupA-RA | 367..627 | 383..643 | 1305 | 100 | Plus |
CG7178-PB | 627 | wupA-RB | 367..627 | 383..643 | 1305 | 100 | Plus |
CG7178-PG | 810 | wupA-RG | 550..810 | 383..643 | 1305 | 100 | Plus |
CG7178-PG | 810 | wupA-RG | 196..462 | 29..295 | 1285 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..736 | 17..643 | 3135 | 100 | Plus |
wupA-RD | 1257 | CG7178-RD | 238..864 | 17..643 | 3135 | 100 | Plus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 17..573 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
X | 23542271 | X | 18110504..18110606 | 385..283 | 515 | 100 | Minus |
X | 23542271 | X | 18105961..18106034 | 643..570 | 370 | 100 | Minus |
X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:00:14 has no hits.
BS05582.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:47 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-PD | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:55 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7178-PE | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:36 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 136..772 | 12..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:08 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 233..869 | 12..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:08 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
X | 18110504..18110604 | 285..385 | 100 | <- | Minus |
X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
X | 18105956..18106032 | 572..651 | 95 | <- | Minus |
X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:36 Download gff for
BS05582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17999989..18000065 | 572..651 | 95 | <- | Minus |
arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
arm_X | 18004537..18004637 | 285..385 | 100 | <- | Minus |
arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
BS05582.complete Sequence
659 bp (659 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635153
> BS05582.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAAAGCTTT
CTAGACCAT
BS05582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 627 | CG7178-PE | 1..627 | 17..643 | 3135 | 100 | Plus |
wupA-RD | 627 | CG7178-PD | 1..627 | 17..643 | 3135 | 100 | Plus |
wupA-RI | 600 | CG7178-PI | 1..557 | 17..573 | 2785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..736 | 17..643 | 3135 | 100 | Plus |
wupA-RD | 1257 | CG7178-RD | 238..864 | 17..643 | 3135 | 100 | Plus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 17..573 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
X | 23542271 | X | 18110504..18110606 | 385..283 | 515 | 100 | Minus |
X | 23542271 | X | 18105961..18106034 | 643..570 | 370 | 100 | Minus |
X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:10:20 has no hits.
BS05582.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:40 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 1..627 | 17..643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:24 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 99..735 | 12..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:30 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 141..765 | 17..641 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:40 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 99..735 | 12..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:24 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 238..862 | 17..641 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:24 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18105963..18106032 | 572..641 | 100 | <- | Minus |
X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
X | 18110504..18110604 | 285..385 | 100 | <- | Minus |
X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:30 Download gff for
BS05582.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17999996..18000065 | 572..641 | 100 | <- | Minus |
arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
arm_X | 18004537..18004637 | 285..385 | 100 | <- | Minus |
arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
BS05582.pep Sequence
Translation from 16 to 642
> BS05582.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*
BS05582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-PE | 208 | CG7178-PE | 1..208 | 1..208 | 1047 | 100 | Plus |
wupA-PD | 208 | CG7178-PD | 1..208 | 1..208 | 1047 | 100 | Plus |
wupA-PF | 208 | CG7178-PF | 1..208 | 1..208 | 952 | 91.3 | Plus |
wupA-PC | 208 | CG7178-PC | 1..208 | 1..208 | 952 | 91.3 | Plus |
wupA-PI | 199 | CG7178-PI | 1..187 | 1..187 | 934 | 100 | Plus |