Clone BS05582 Report

Search the DGRC for BS05582

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:55
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptwupA-RD
Protein status:BS05582.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05582.3prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-02

> BS05582.3prime
ATGGTCTAGAAAGCTTTTAAGCTTCGGCCTCAACCTCCTCCTTCACCTTG
GCATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTC
CTCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGA
AGTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTAT
TTGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTT
AACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGT
GTTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATAT
TGTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCT
GGGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGC
GTTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAAC
CTGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTT
GGCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCT
CGATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGACT
GATAACT

BS05582.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7178-PD 627 wupA-RD 1..627 643..17 3135 100 Minus
CG7178-PE 627 wupA-RE 1..627 643..17 3135 100 Minus
CG7178-PC 627 wupA-RC 1..279 643..365 1345 99.2 Minus
CG7178-PF 627 wupA-RF 1..279 643..365 1345 99.2 Minus
CG7178-PA 627 wupA-RA 1..268 643..376 1340 100 Minus
CG7178-PB 627 wupA-RB 1..268 643..376 1340 100 Minus
CG7178-PC 627 wupA-RC 367..627 277..17 1305 100 Minus
CG7178-PF 627 wupA-RF 367..627 277..17 1305 100 Minus
CG7178-PA 627 wupA-RA 367..627 277..17 1305 100 Minus
CG7178-PB 627 wupA-RB 367..627 277..17 1305 100 Minus
CG7178-PG 810 wupA-RG 550..810 277..17 1305 100 Minus
CG7178-PG 810 wupA-RG 196..462 631..365 1285 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..736 643..17 3135 100 Minus
wupA-RD 1257 CG7178-RD 238..864 643..17 3135 100 Minus
wupA-RI 1029 CG7178-RI 141..697 643..87 2785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 89..230 710 100 Plus
X 23542271 X 18113447..18113577 500..630 655 100 Plus
X 23542271 X 18113258..18113382 376..500 625 100 Plus
X 23542271 X 18110504..18110606 275..377 515 100 Plus
X 23542271 X 18105961..18106034 17..90 370 100 Plus
X 23542271 X 18106888..18106933 231..276 230 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:41:49 has no hits.

BS05582.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:46 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-PD 1..627 17..643 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:54 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7178-PE 1..627 17..643 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:52:59 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 136..772 9..648 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:52 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 233..869 9..648 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:52 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18106681..18106822 89..230 100 <- Plus
X 18113258..18113381 376..499 100 <- Plus
X 18106888..18106931 231..274 100 <- Plus
X 18110504..18110604 275..375 100 <- Plus
X 18113447..18113575 500..628 100 <- Plus
X 18105956..18106032 9..88 95 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:52:59 Download gff for BS05582.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999989..18000065 9..88 95 <- Plus
arm_X 18000714..18000855 89..230 100 <- Plus
arm_X 18000921..18000964 231..274 100 <- Plus
arm_X 18004537..18004637 275..375 100 <- Plus
arm_X 18007291..18007414 376..499 100 <- Plus
arm_X 18007480..18007608 500..628 100 <- Plus

BS05582.5prime Sequence

657 bp (656 high quality bases) assembled on 2005-12-02

> BS05582.5prime
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAAAGCTTT
CTAGACC

BS05582.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7178-PD 627 wupA-RD 1..627 17..643 3135 100 Plus
CG7178-PE 627 wupA-RE 1..627 17..643 3135 100 Plus
CG7178-PC 627 wupA-RC 1..279 17..295 1345 99.2 Plus
CG7178-PF 627 wupA-RF 1..279 17..295 1345 99.2 Plus
CG7178-PA 627 wupA-RA 1..268 17..284 1340 100 Plus
CG7178-PB 627 wupA-RB 1..268 17..284 1340 100 Plus
CG7178-PC 627 wupA-RC 367..627 383..643 1305 100 Plus
CG7178-PF 627 wupA-RF 367..627 383..643 1305 100 Plus
CG7178-PA 627 wupA-RA 367..627 383..643 1305 100 Plus
CG7178-PB 627 wupA-RB 367..627 383..643 1305 100 Plus
CG7178-PG 810 wupA-RG 550..810 383..643 1305 100 Plus
CG7178-PG 810 wupA-RG 196..462 29..295 1285 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..736 17..643 3135 100 Plus
wupA-RD 1257 CG7178-RD 238..864 17..643 3135 100 Plus
wupA-RI 1029 CG7178-RI 141..697 17..573 2785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 571..430 710 100 Minus
X 23542271 X 18113447..18113577 160..30 655 100 Minus
X 23542271 X 18113258..18113382 284..160 625 100 Minus
X 23542271 X 18110504..18110606 385..283 515 100 Minus
X 23542271 X 18105961..18106034 643..570 370 100 Minus
X 23542271 X 18106888..18106933 429..384 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:00:14 has no hits.

BS05582.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:47 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-PD 1..627 17..643 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:45:55 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7178-PE 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:36 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 136..772 12..651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:08 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 233..869 12..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:08 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18113447..18113575 32..160 100 <- Minus
X 18106888..18106931 386..429 100 <- Minus
X 18110504..18110604 285..385 100 <- Minus
X 18113258..18113381 161..284 100 <- Minus
X 18105956..18106032 572..651 95 <- Minus
X 18106681..18106822 430..571 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:36 Download gff for BS05582.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999989..18000065 572..651 95 <- Minus
arm_X 18000714..18000855 430..571 100 <- Minus
arm_X 18000921..18000964 386..429 100 <- Minus
arm_X 18004537..18004637 285..385 100 <- Minus
arm_X 18007291..18007414 161..284 100 <- Minus
arm_X 18007480..18007608 32..160 100 <- Minus

BS05582.complete Sequence

659 bp (659 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635153

> BS05582.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAAAGCTTT
CTAGACCAT

BS05582.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 627 CG7178-PE 1..627 17..643 3135 100 Plus
wupA-RD 627 CG7178-PD 1..627 17..643 3135 100 Plus
wupA-RI 600 CG7178-PI 1..557 17..573 2785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..736 17..643 3135 100 Plus
wupA-RD 1257 CG7178-RD 238..864 17..643 3135 100 Plus
wupA-RI 1029 CG7178-RI 141..697 17..573 2785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 571..430 710 100 Minus
X 23542271 X 18113447..18113577 160..30 655 100 Minus
X 23542271 X 18113258..18113382 284..160 625 100 Minus
X 23542271 X 18110504..18110606 385..283 515 100 Minus
X 23542271 X 18105961..18106034 643..570 370 100 Minus
X 23542271 X 18106888..18106933 429..384 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:10:20 has no hits.

BS05582.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:40 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 1..627 17..643 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:24 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 99..735 12..651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:30 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 141..765 17..641 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:40 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 99..735 12..651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:24 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 238..862 17..641 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:24 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105963..18106032 572..641 100 <- Minus
X 18106681..18106822 430..571 100 <- Minus
X 18106888..18106931 386..429 100 <- Minus
X 18110504..18110604 285..385 100 <- Minus
X 18113258..18113381 161..284 100 <- Minus
X 18113447..18113575 32..160 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:30 Download gff for BS05582.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999996..18000065 572..641 100 <- Minus
arm_X 18000714..18000855 430..571 100 <- Minus
arm_X 18000921..18000964 386..429 100 <- Minus
arm_X 18004537..18004637 285..385 100 <- Minus
arm_X 18007291..18007414 161..284 100 <- Minus
arm_X 18007480..18007608 32..160 100 <- Minus

BS05582.pep Sequence

Translation from 16 to 642

> BS05582.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*

BS05582.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PE 208 CG7178-PE 1..208 1..208 1047 100 Plus
wupA-PD 208 CG7178-PD 1..208 1..208 1047 100 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 952 91.3 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 952 91.3 Plus
wupA-PI 199 CG7178-PI 1..187 1..187 934 100 Plus