Clone Sequence Records
BS05585.3prime Sequence
614 bp (589 high quality bases) assembled on 2005-12-02
> BS05585.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTACCAGCGGTCACTTTGCCGCCATCC
GCGCTGCCAAACTTCTCAAACAGCTCGTACTTCCAGCGCATGTAAGCTAC
GCGCATTCTGTCCCAAACGTTGTCCACGGAGTCCATGGCTGGGCGCACAT
CCAGCAGGGCAAAGCGGTAGTCTTTGTCCACCAGTCCACCGTCGTAGTAG
TCGATGACGTAGCGCACATCCTTGCCGCAGCGATCGACTATCCAGTCATG
CCTATCGAATGGCAGCTCGTATCCCAGCCAGCTGCGGAATCGAGCGCGCG
GACTGAAGTCCTTGGCCTTGCCACCGAAACTCTTGAGGCGCGGATTGCCG
CATTCCTTGGCGTGAAGCGCCTCCCACTTAAGTACCTCCTGCCAGGCCTG
CTCGTTGTTGGCATTGTGGATGCGTATGATGTCGCCCATGTCCTTTTGCG
ATACGTCCTCGGTCTTCCAGCGCCAGCCCTTGCGTAGCATGGCGTTCCAG
AACATCTGTTGGCTGGGATACTGCCAGAATTGAACGCTGCCATCCTCGGT
GACTTTGGGAATGGTCGACGTCTGGCGGTCGGTGGGCAGTGGAAAGGGCT
GATCTGCCGCCGGC
BS05585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6022-PA | 846 | CG6022-RA | 249..846 | 614..17 | 2990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 433..1031 | 614..16 | 2995 | 100 | Minus |
| Cchl-RA | 1356 | CG6022-RA | 599..1197 | 614..16 | 2995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026448..22026789 | 273..614 | 1710 | 100 | Plus |
| 3R | 32079331 | 3R | 22026134..22026391 | 16..273 | 1290 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:18:40 has no hits.
BS05585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:50 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 249..846 | 17..614 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:00 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 249..846 | 17..614 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:32:39 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 599..1197 | 16..614 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:55 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 599..1197 | 16..614 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:55 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026134..22026390 | 16..272 | 100 | <- | Plus |
| 3R | 22026448..22026789 | 273..614 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:32:39 Download gff for
BS05585.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17851856..17852112 | 16..272 | 100 | <- | Plus |
| arm_3R | 17852170..17852511 | 273..614 | 100 | | Plus |
BS05585.5prime Sequence
876 bp (827 high quality bases) assembled on 2005-12-02
> BS05585.5prime
GAAGTTATCAGTCGACATGGGCAATACAGCCATCACCCGAGTGCAAATGG
AGGCCACGAAGAGTGTGCCGGTGGACCACGCCAAGTACATGAGCGGCAGT
GGTGCCCCGCCACCAGAATGCCCCATGCATCAGAAGCATGGAGATGCAAA
ATCGGCCTCCGCCGTACCCCCACATCCCAAGATGCAGGCCGCTTCCGAAT
GTCCGGTGCAGCACGACAACAGCGACGTTAATCCGCTGAATATGATGCCA
CCGGCAAACCAACAGCCGGCGGCAGATCAGCCCTTTCCACTGCCCACCGA
CCGCCAGACGTCGACCATTCCCAAAGTCACCGAGGATGGCAGCGTTCAAT
TCTGGCAGTATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAG
GGCTGGCGCTGGAAGACCGAGGACGTATCGCAAAAGGACATGGGCGACAT
CATACGCATCCACAATGCCAACAACGAGCAGGCCTGGCAGGAGGTACTTA
AGTGGGAGGCGCTTCACGCCAAGGAATGCGGCAATCCGCGCCTCAAGAGT
TTCGGTGGCAAGGCCAAGGACTTCAGTCCGCGCGCTCGATTCCGCAGCTG
GCTGGGATACGAGCTGCCATTCGATAGGCATGACTGGATAGTCGATCGCT
GCGGCAAGGATGTGCGCTACGTCATCGACTACTACGACGGTGGACTGGTG
GACAAAGACTACCGCTTTGCCCTGCTGGATGTGCGCCCAGCCATGGACTC
CGTGGACAACGTTTGGGACAGAATGCGCGTAGCTTACATGCGCTGGAAGT
ACGAGCTGTTTGAGAAGTTTGGCAGCGCGGATGGCGGCAAAGTGACCGCT
GGTAGCGACTAGAAGCTTTCTAGACC
BS05585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6022-PA | 846 | CG6022-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 185..1031 | 17..863 | 4235 | 100 | Plus |
| Cchl-RA | 1356 | CG6022-RA | 351..1197 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026448..22027037 | 606..17 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 22026134..22026391 | 863..606 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:41:57 has no hits.
BS05585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:15:51 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:01 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6022-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:18:11 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..1197 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:58 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 343..1197 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:58 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026134..22026390 | 607..863 | 100 | <- | Minus |
| 3R | 22026448..22027045 | 9..606 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:18:11 Download gff for
BS05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17851856..17852112 | 607..863 | 100 | <- | Minus |
| arm_3R | 17852170..17852767 | 9..606 | 99 | | Minus |
BS05585.complete Sequence
878 bp (878 high quality bases) assembled on 2006-02-02
> BS05585.complete
GAAGTTATCAGTCGACATGGGCAATACAGCCATCACCCGAGTGCAAATGG
AGGCCACGAAGAGTGTGCCGGTGGACCACGCCAAGTACATGAGCGGCAGT
GGTGCCCCGCCACCAGAATGCCCCATGCATCAGAAGCATGGAGATGCAAA
ATCGGCCTCCGCCGTACCCCCACATCCCAAGATGCAGGCCGCTTCCGAAT
GTCCGGTGCAGCACGACAACAGCGACGTTAATCCGCTGAATATGATGCCA
CCGGCAAACCAACAGCCGGCGGCAGATCAGCCCTTTCCACTGCCCACCGA
CCGCCAGACGTCGACCATTCCCAAAGTCACCGAGGATGGCAGCGTTCAAT
TCTGGCAGTATCCCAGCCAACAGATGTTCTGGAACGCCATGCTACGCAAG
GGCTGGCGCTGGAAGACCGAGGACGTATCGCAAAAGGACATGGGCGACAT
CATACGCATCCACAATGCCAACAACGAGCAGGCCTGGCAGGAGGTACTTA
AGTGGGAGGCGCTTCACGCCAAGGAATGCGGCAATCCGCGCCTCAAGAGT
TTCGGTGGCAAGGCCAAGGACTTCAGTCCGCGCGCTCGATTCCGCAGCTG
GCTGGGATACGAGCTGCCATTCGATAGGCATGACTGGATAGTCGATCGCT
GCGGCAAGGATGTGCGCTACGTCATCGACTACTACGACGGTGGACTGGTG
GACAAAGACTACCGCTTTGCCCTGCTGGATGTGCGCCCAGCCATGGACTC
CGTGGACAACGTTTGGGACAGAATGCGCGTAGCTTACATGCGCTGGAAGT
ACGAGCTGTTTGAGAAGTTTGGCAGCGCGGATGGCGGCAAAGTGACCGCT
GGTAGCGACTAGAAGCTTTCTAGACCAT
BS05585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 846 | CG6022-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
| Cchl-RA | 846 | CG6022-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-RB | 1190 | CG6022-RB | 185..1031 | 17..863 | 4235 | 100 | Plus |
| Cchl-RA | 1356 | CG6022-RA | 351..1197 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22026448..22027037 | 606..17 | 2950 | 100 | Minus |
| 3R | 32079331 | 3R | 22026134..22026391 | 863..606 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:16 has no hits.
BS05585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:35 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:30 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 339..1193 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:00 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 351..1196 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:35 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 339..1193 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:11 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cchl-RA | 351..1196 | 17..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:11 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22026135..22026390 | 607..862 | 100 | <- | Minus |
| 3R | 22026448..22027037 | 17..606 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:00 Download gff for
BS05585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17851857..17852112 | 607..862 | 100 | <- | Minus |
| arm_3R | 17852170..17852759 | 17..606 | 100 | | Minus |
BS05585.pep Sequence
Translation from 16 to 861
> BS05585.pep
MGNTAITRVQMEATKSVPVDHAKYMSGSGAPPPECPMHQKHGDAKSASAV
PPHPKMQAASECPVQHDNSDVNPLNMMPPANQQPAADQPFPLPTDRQTST
IPKVTEDGSVQFWQYPSQQMFWNAMLRKGWRWKTEDVSQKDMGDIIRIHN
ANNEQAWQEVLKWEALHAKECGNPRLKSFGGKAKDFSPRARFRSWLGYEL
PFDRHDWIVDRCGKDVRYVIDYYDGGLVDKDYRFALLDVRPAMDSVDNVW
DRMRVAYMRWKYELFEKFGSADGGKVTAGSD*
BS05585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cchl-PB | 281 | CG6022-PB | 1..281 | 1..281 | 1552 | 100 | Plus |
| Cchl-PA | 281 | CG6022-PA | 1..281 | 1..281 | 1552 | 100 | Plus |
