Clone Sequence Records
BS05601.3prime Sequence
805 bp (734 high quality bases) assembled on 2005-12-02
> BS05601.3prime
ATGGTCTAGAAAGCTTTCATGACTCTTGGTCCACTACAACTTCATGACTT
AAATGCTCGAAACGCCCTTCGATTAGCTGACTGGCCAGGCAATCTCCGCA
CAGATTAAGGTAACAATAACAACTGTTACAACGCCATTGGGTCCTGGTCA
CAGATGCCTCTTCGCACTCGGCACACTTGGCGGCCAGCAAGTCTGGCTCA
TATCCGTCCTCCATTTCCCGTTTCTCGTCCTGAATGGCTGATAGAAGCTT
AAGGCATAGTTCCTGTTTTCGCTTTGACTCCGCATTCAGATCGGCATCCA
TGTACTCGGATTCGATCTTTGGTTCGATCTTGGATGCCGGCATAAGGAGC
ATATCGCTCGCAGGCGATGGGATTCGCAGGTCGTCAAATGTGAAATCGTC
CTCTGGCATTTGTAGCGATATATTATGAGCGGGGAAGAAGGTTGACTTGC
GAAGTTTGATCTTCGGCTTACTCAAACCAGGACGTCGATGCTTGGGTATG
CGACCGGGCACAGGCATTCCGGCATCGTGCAGCTTTTGGAAATACTTCTG
GACACGACTATACACTTGCTGTGCCGTTCTGTTGCCCAAGGCCTTCGCTA
TCTTCCCGAATCTGCGCATTTCCACTTCCTCTGGCGGATACTGGATGAGC
AGCTGCTCCAAGCGACTCTGCTCTTCGTTGGTCCACAAGCGATTGAAATT
CTCCGACCGTCCATTGCTCCTGTCCCGATTCTTGTTCGCCTCTTGCGTCC
ATGAAGACGCATCGGTCGGTGTCTCATTTGTGCCCCCTTCCTCGTCATTG
GGCGA
BS05601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9200-PA | 1071 | CG9200-RA | 283..1071 | 805..17 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 358..1146 | 805..17 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959183..6959971 | 17..805 | 3945 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:25:13 has no hits.
BS05601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:13 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 284..1071 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:30 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 284..1071 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:13:28 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 359..1156 | 5..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:15 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 359..1156 | 5..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:15 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959173..6959970 | 5..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:13:28 Download gff for
BS05601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959173..6959970 | 5..804 | 99 | | Plus |
BS05601.5prime Sequence
793 bp (727 high quality bases) assembled on 2005-12-02
> BS05601.5prime
GAAGTTATCAGTCGACATGGAAATAGCAGAGATATCTGCAGAAGATGAGG
ATGTGTTTCACTTTGAGACCGAGCACCTGGCCCTGCGTGGCAACCAGTGC
TATACCAATTTGCTGCGCACTTTGGCCGTGCTGCAGGCACAAAGGATTCG
GGTGCATCAGCAGATTGAGGAATTGGAAGCCACACAAAATATCTACTTGG
AGAATCCGCAACATATGCTGGACAAACTGCGAAACAACGAGCCTTTGATA
GCGGATAATTACATCACCACGACCGTTCTACCGGACTTGCCAACTCTGTC
GCCCAATGACGAGGAAGGGGGCACAAATGAGACACCGACCGATGCGTCTT
CATGGACGCAAGAGGCGAACAAGAATCGGGACAGGAGCAATGGACGGTCG
GAGAATTTCAATCGCTTGTGGACCAACGAAGAGCAGAGTCGCTTGGAGCA
GCTGCTCATCCAGTATCCGCCAGAGGAAGTGGAAATGCGCAGATTCGGGA
AGATAGCGAAGGCCTTGGGCAACAGAACGGCACAGCAAGTGTATAGTCGT
GTCCAGAAGTATTTCCAAAAGCTGCACGATGCCGGAATGCCTGTGCCCGG
TCGCATACCCAAGCATCGACGTCCTGGTTTGAGTAAGCCGAAGATCAAAC
TTCGCAAGTCAACCTTCTTCCCCGCTCATAATATATCGCTACAAATGCCA
GAGGACGATTTCACATTTGACGACCTGCGAATCCCATCGCCTGCGAGCGA
TATGCTCCTTATGCCGGCATCCAAGATCGAACAAAAGATCGAA
BS05601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9200-PA | 1071 | CG9200-RA | 1..777 | 17..793 | 3860 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 76..852 | 17..793 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959477..6960253 | 793..17 | 3870 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:40:08 has no hits.
BS05601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:14 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:31 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 1..775 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:17:06 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 73..852 | 11..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:52 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 73..852 | 11..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:52 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959477..6960255 | 11..793 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:17:06 Download gff for
BS05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959477..6960255 | 11..793 | 99 | <- | Minus |
BS05601.complete Sequence
1103 bp (1103 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635154
> BS05601.complete
GAAGTTATCAGTCGACATGGAAATAGCAGAGATATCTGCAGAAGATGAGG
ATGTGTTTCACTTTGAGACCGAGCACCTGGCCCTGCGTGGCAACCAGTGC
TATACCAATTTGCTGCGCACTTTGGCCGTGCTGCAGGCACAAAGGATTCG
GGTGCATCAGCAGATTGAGGAATTGGAAGCCACACAAAATATCTACTTGG
AGAATCCGCAACATATGCTGGACAAACTGCGAAACAACGAGCCTTTGATA
GCGGATAATTACATCACCACGACCGTTCTACCGGACTTGCCAACTCTGTC
GCCCAATGACGAGGAAGGGGGCACAAATGAGACACCGACCGATGCGTCTT
CATGGACGCAAGAGGCGAACAAGAATCGGGACAGGAGCAATGGACGGTCG
GAGAATTTCAATCGCTTGTGGACCAACGAAGAGCAGAGTCGCTTGGAGCA
GCTGCTCATCCAGTATCCGCCAGAGGAAGTGGAAATGCGCAGATTCGGGA
AGATAGCGAAGGCCTTGGGCAACAGAACGGCACAGCAAGTGTATAGTCGT
GTCCAGAAGTATTTCCAAAAGCTGCACGATGCCGGAATGCCTGTGCCCGG
TCGCATACCCAAGCATCGACGTCCTGGTTTGAGTAAGCCGAAGATCAAAC
TTCGCAAGTCAACCTTCTTCCCCGCTCATAATATATCGCTACAAATGCCA
GAGGACGATTTCACATTTGACGACCTGCGAATCCCATCGCCTGCGAGCGA
TATGCTCCTTATGCCGGCATCCAAGATCGAACCAAAGATCGAATCCGAGT
ACATGGATGCCGATCTGAATGCGGAGTCAAAGCGAAAACAGGAACTATGC
CTTAAGCTTCTATCAGCCATTCAGGACGAGAAACGGGAAATGGAGGACGG
ATATGAGCCAGACTTGCTGGCCGCCAAGTGTGCCGAGTGCGAAGAGGCAT
CTGTGACCAGGACCCAATGGCGTTGTAACAGTTGTTATTGTTACCTTAAT
CTGTGCGGAGATTGCCTGGCCAGTCAGCTAATCGAAGGGCGTTTCGAGCA
TTTAAGTCATGAAGTTGTAGTGGACCAAGAGTCATGAAAGCTTTCTAGAC
CAT
BS05601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1071 | CG9200-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 76..1146 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959183..6960253 | 1087..17 | 5355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:22:57 has no hits.
BS05601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:36 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 1..1071 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:31 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 21..1104 | 11..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:27 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 76..1145 | 17..1086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:36 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 21..1104 | 11..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:21 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 76..1145 | 17..1086 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:21 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959184..6960253 | 17..1086 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:27 Download gff for
BS05601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959184..6960253 | 17..1086 | 100 | | Minus |
BS05601.pep Sequence
Translation from 16 to 1086
> BS05601.pep
MEIAEISAEDEDVFHFETEHLALRGNQCYTNLLRTLAVLQAQRIRVHQQI
EELEATQNIYLENPQHMLDKLRNNEPLIADNYITTTVLPDLPTLSPNDEE
GGTNETPTDASSWTQEANKNRDRSNGRSENFNRLWTNEEQSRLEQLLIQY
PPEEVEMRRFGKIAKALGNRTAQQVYSRVQKYFQKLHDAGMPVPGRIPKH
RRPGLSKPKIKLRKSTFFPAHNISLQMPEDDFTFDDLRIPSPASDMLLMP
ASKIEPKIESEYMDADLNAESKRKQELCLKLLSAIQDEKREMEDGYEPDL
LAAKCAECEEASVTRTQWRCNSCYCYLNLCGDCLASQLIEGRFEHLSHEV
VVDQES*
BS05601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-PA | 356 | CG9200-PA | 1..356 | 1..356 | 1871 | 100 | Plus |
