Clone BS05602 Report

Search the DGRC for BS05602

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRala-RA
Protein status:BS05602.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05602.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-02

> BS05602.3prime
ATGGTCTAGAAAGCTTCTAAAGTAGGGTACACTTAAGTCTCCGCTTCTTG
CATCTATCTTTAGCACGCCCGCTCGTGGCTTTCGAATCTTCGGTTTTTCG
TGATCTTATTTCGCGCATCAAATCAAAAAATACCTTGTCCACATTTTCGC
GGGTTTTAGCCGAGGTCTCCACATAGGGCACCGCCCACTGCTGCGCCCTC
AGCTGGCACTCGCTCAGCGGCACCTTGCGCTTATCATTCAGATCGCACTT
GTTGCCCACCAGCAGGAACGGTATGCTCTCATCATTCTTCACCCGCAAGA
TTTGTTCTCTGAATTCCTGGGTTGCCTGGAAGCTTTCGTCGTCTGTGATG
GAGAAGACGCAAAGGAAACCCTCGCCGCTGCGAAAGTAGTTATCTCTGAT
GGCGGCATAATCCTCCTGGCCAGCCGTATCCAATATATCTATTTGTACTT
CCTCGCCGTCCAGCACAACCTTTTTCCTATAGCTATCGGCCTTGGTGGGC
TCGTAGTCCTCGACGAACTCATCGTACATAAACTGCAGTGTGAGGGCGGA
CTTTCCCACGCCGCCACTGCCCACCATTATGACCTTGTGGAGCGCCGGTC
CGGCTGTCGGCTTCTTGCTCATGTCGACTGATAACT

BS05602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2849-PA 606 Rala-RA 1..606 622..17 3030 100 Minus
CG2849-PC 606 Rala-RC 1..606 622..17 3030 100 Minus
CG2849-PB 594 Rala-RB 1..496 622..127 2480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..906 623..17 3035 100 Minus
Rala-RA 2377 CG2849-RA 496..1102 623..17 3035 100 Minus
Rala-RB 2057 CG2849-RB 300..801 623..122 2495 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 132..313 910 100 Plus
X 23542271 X 3709836..3709998 309..471 815 100 Plus
X 23542271 X 3710067..3710222 468..623 780 100 Plus
X 23542271 X 3707375..3707493 17..135 595 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:08:03 has no hits.

BS05602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:15 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:33 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2849-PC 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:28 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1109 6..623 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:06 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1109 6..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:06 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3709836..3709996 309..469 100 <- Plus
X 3710069..3710222 470..623 100   Plus
X 3707368..3707491 6..133 96 <- Plus
X 3708744..3708918 134..308 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:28 Download gff for BS05602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3601401..3601524 6..133 96 <- Plus
arm_X 3602777..3602951 134..308 100 <- Plus
arm_X 3603869..3604029 309..469 100 <- Plus
arm_X 3604102..3604255 470..623 100   Plus

BS05602.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-11-29

> BS05602.5prime
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTTAGAAGCTTTCTAGACC

BS05602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2849-PA 606 Rala-RA 1..606 17..622 3030 100 Plus
CG2849-PC 606 Rala-RC 1..606 17..622 3030 100 Plus
CG2849-PB 594 Rala-RB 1..496 17..512 2480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..906 16..622 3035 100 Plus
Rala-RA 2377 CG2849-RA 496..1102 16..622 3035 100 Plus
Rala-RB 2057 CG2849-RB 300..801 16..517 2495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 507..326 910 100 Minus
X 23542271 X 3709836..3709998 330..168 815 100 Minus
X 23542271 X 3710067..3710222 171..16 780 100 Minus
X 23542271 X 3707375..3707493 622..504 595 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:55:40 has no hits.

BS05602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:16 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:35 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2849-PC 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:26 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1109 16..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:11 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1109 16..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:11 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3710069..3710222 16..169 100   Minus
X 3707368..3707491 506..633 96 <- Minus
X 3708744..3708918 331..505 100 <- Minus
X 3709836..3709996 170..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:26 Download gff for BS05602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3603869..3604029 170..330 100 <- Minus
arm_X 3604102..3604255 16..169 100   Minus
arm_X 3601401..3601524 506..633 96 <- Minus
arm_X 3602777..3602951 331..505 100 <- Minus

BS05602.complete Sequence

638 bp (638 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635155

> BS05602.complete
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTTAGAAGCTTTCTAGACCAT

BS05602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 606 CG2849-PC 1..606 17..622 3030 100 Plus
Rala-RA 606 CG2849-PA 1..606 17..622 3030 100 Plus
Rala-RB 594 CG2849-PB 1..501 17..517 2490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..906 16..622 3035 100 Plus
Rala-RA 2377 CG2849-RA 496..1102 16..622 3035 100 Plus
Rala-RB 2057 CG2849-RB 300..801 16..517 2495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 507..326 910 100 Minus
X 23542271 X 3709836..3709998 330..168 815 100 Minus
X 23542271 X 3710067..3710222 171..16 780 100 Minus
X 23542271 X 3707375..3707493 622..504 595 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:37:41 has no hits.

BS05602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:37 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:41 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 297..910 16..633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:10 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 497..1102 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:37 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 297..910 16..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:46 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 497..1102 17..622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:46 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
X 3710069..3710221 17..169 100   Minus
X 3707375..3707491 506..622 100 <- Minus
X 3708744..3708918 331..505 100 <- Minus
X 3709836..3709996 170..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:10 Download gff for BS05602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3604102..3604254 17..169 100   Minus
arm_X 3601408..3601524 506..622 100 <- Minus
arm_X 3602777..3602951 331..505 100 <- Minus
arm_X 3603869..3604029 170..330 100 <- Minus

BS05602.pep Sequence

Translation from 16 to 621

> BS05602.pep
MSKKPTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK
KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQA
TQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPY
VETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTL
L*

BS05602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-PC 201 CG2849-PC 1..201 1..201 1036 100 Plus
Rala-PA 201 CG2849-PA 1..201 1..201 1036 100 Plus
Rala-PB 197 CG2849-PB 1..178 1..178 892 96.6 Plus
Ras85D-PA 189 CG9375-PA 4..189 12..201 494 52.1 Plus
Ras64B-PA 192 CG1167-PA 6..192 12..201 451 46.3 Plus