Clone Sequence Records
BS05602.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-02
> BS05602.3prime
ATGGTCTAGAAAGCTTCTAAAGTAGGGTACACTTAAGTCTCCGCTTCTTG
CATCTATCTTTAGCACGCCCGCTCGTGGCTTTCGAATCTTCGGTTTTTCG
TGATCTTATTTCGCGCATCAAATCAAAAAATACCTTGTCCACATTTTCGC
GGGTTTTAGCCGAGGTCTCCACATAGGGCACCGCCCACTGCTGCGCCCTC
AGCTGGCACTCGCTCAGCGGCACCTTGCGCTTATCATTCAGATCGCACTT
GTTGCCCACCAGCAGGAACGGTATGCTCTCATCATTCTTCACCCGCAAGA
TTTGTTCTCTGAATTCCTGGGTTGCCTGGAAGCTTTCGTCGTCTGTGATG
GAGAAGACGCAAAGGAAACCCTCGCCGCTGCGAAAGTAGTTATCTCTGAT
GGCGGCATAATCCTCCTGGCCAGCCGTATCCAATATATCTATTTGTACTT
CCTCGCCGTCCAGCACAACCTTTTTCCTATAGCTATCGGCCTTGGTGGGC
TCGTAGTCCTCGACGAACTCATCGTACATAAACTGCAGTGTGAGGGCGGA
CTTTCCCACGCCGCCACTGCCCACCATTATGACCTTGTGGAGCGCCGGTC
CGGCTGTCGGCTTCTTGCTCATGTCGACTGATAACT
BS05602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2849-PA | 606 | Rala-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
CG2849-PC | 606 | Rala-RC | 1..606 | 622..17 | 3030 | 100 | Minus |
CG2849-PB | 594 | Rala-RB | 1..496 | 622..127 | 2480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..906 | 623..17 | 3035 | 100 | Minus |
Rala-RA | 2377 | CG2849-RA | 496..1102 | 623..17 | 3035 | 100 | Minus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 623..122 | 2495 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 132..313 | 910 | 100 | Plus |
X | 23542271 | X | 3709836..3709998 | 309..471 | 815 | 100 | Plus |
X | 23542271 | X | 3710067..3710222 | 468..623 | 780 | 100 | Plus |
X | 23542271 | X | 3707375..3707493 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:08:03 has no hits.
BS05602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:15 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:33 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2849-PC | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:28 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1109 | 6..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:06 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1109 | 6..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:06 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3709836..3709996 | 309..469 | 100 | <- | Plus |
X | 3710069..3710222 | 470..623 | 100 | | Plus |
X | 3707368..3707491 | 6..133 | 96 | <- | Plus |
X | 3708744..3708918 | 134..308 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:28 Download gff for
BS05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3601401..3601524 | 6..133 | 96 | <- | Plus |
arm_X | 3602777..3602951 | 134..308 | 100 | <- | Plus |
arm_X | 3603869..3604029 | 309..469 | 100 | <- | Plus |
arm_X | 3604102..3604255 | 470..623 | 100 | | Plus |
BS05602.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-11-29
> BS05602.5prime
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTTAGAAGCTTTCTAGACC
BS05602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2849-PA | 606 | Rala-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
CG2849-PC | 606 | Rala-RC | 1..606 | 17..622 | 3030 | 100 | Plus |
CG2849-PB | 594 | Rala-RB | 1..496 | 17..512 | 2480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..906 | 16..622 | 3035 | 100 | Plus |
Rala-RA | 2377 | CG2849-RA | 496..1102 | 16..622 | 3035 | 100 | Plus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 16..517 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 507..326 | 910 | 100 | Minus |
X | 23542271 | X | 3709836..3709998 | 330..168 | 815 | 100 | Minus |
X | 23542271 | X | 3710067..3710222 | 171..16 | 780 | 100 | Minus |
X | 23542271 | X | 3707375..3707493 | 622..504 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:55:40 has no hits.
BS05602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:16 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:35 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2849-PC | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:26 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1109 | 16..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:11 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1109 | 16..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:11 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3710069..3710222 | 16..169 | 100 | | Minus |
X | 3707368..3707491 | 506..633 | 96 | <- | Minus |
X | 3708744..3708918 | 331..505 | 100 | <- | Minus |
X | 3709836..3709996 | 170..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:26 Download gff for
BS05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3603869..3604029 | 170..330 | 100 | <- | Minus |
arm_X | 3604102..3604255 | 16..169 | 100 | | Minus |
arm_X | 3601401..3601524 | 506..633 | 96 | <- | Minus |
arm_X | 3602777..3602951 | 331..505 | 100 | <- | Minus |
BS05602.complete Sequence
638 bp (638 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635155
> BS05602.complete
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTTAGAAGCTTTCTAGACCAT
BS05602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 606 | CG2849-PC | 1..606 | 17..622 | 3030 | 100 | Plus |
Rala-RA | 606 | CG2849-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Rala-RB | 594 | CG2849-PB | 1..501 | 17..517 | 2490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..906 | 16..622 | 3035 | 100 | Plus |
Rala-RA | 2377 | CG2849-RA | 496..1102 | 16..622 | 3035 | 100 | Plus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 16..517 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 507..326 | 910 | 100 | Minus |
X | 23542271 | X | 3709836..3709998 | 330..168 | 815 | 100 | Minus |
X | 23542271 | X | 3710067..3710222 | 171..16 | 780 | 100 | Minus |
X | 23542271 | X | 3707375..3707493 | 622..504 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:41 has no hits.
BS05602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:37 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:41 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 297..910 | 16..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:10 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 497..1102 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:37 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 297..910 | 16..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:46 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 497..1102 | 17..622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:46 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3710069..3710221 | 17..169 | 100 | | Minus |
X | 3707375..3707491 | 506..622 | 100 | <- | Minus |
X | 3708744..3708918 | 331..505 | 100 | <- | Minus |
X | 3709836..3709996 | 170..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:10 Download gff for
BS05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3604102..3604254 | 17..169 | 100 | | Minus |
arm_X | 3601408..3601524 | 506..622 | 100 | <- | Minus |
arm_X | 3602777..3602951 | 331..505 | 100 | <- | Minus |
arm_X | 3603869..3604029 | 170..330 | 100 | <- | Minus |
BS05602.pep Sequence
Translation from 16 to 621
> BS05602.pep
MSKKPTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK
KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQA
TQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPY
VETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTL
L*
BS05602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-PC | 201 | CG2849-PC | 1..201 | 1..201 | 1036 | 100 | Plus |
Rala-PA | 201 | CG2849-PA | 1..201 | 1..201 | 1036 | 100 | Plus |
Rala-PB | 197 | CG2849-PB | 1..178 | 1..178 | 892 | 96.6 | Plus |
Ras85D-PA | 189 | CG9375-PA | 4..189 | 12..201 | 494 | 52.1 | Plus |
Ras64B-PA | 192 | CG1167-PA | 6..192 | 12..201 | 451 | 46.3 | Plus |