Clone Sequence Records
BS05603.3prime Sequence
888 bp (780 high quality bases) assembled on 2005-12-02
> BS05603.3prime
ATGGTCTAGAAAGCTTTCAATCGCTGCCCACCGCCGTCGTGGGCGTGCGC
ATGCTGAGGGGCGTGGCTGCGGGCGCAGTCACTGCCGGGGGATGGGGATC
AGAAGAGGAGGGAGCCGCATTCGTTGTCGTTGTTTCCTCCGCCGGCACAC
TGCTACTTCTCTGAATGCTAAAGAATCGCAGGAGCGTCGTCTCGCTGTTT
CGCCTACTGGAAGTGGGCGTTTTTGGCTGGGATTGGGAATGGGAGTGCGA
GGAGCTGCCAGCCGGCGTGCCACCGCCTCCGTCCGTATGGGAGATGCGTC
TGCGGGGCGAGGCGTGTATCCTGGGACTGCACTCTGACTGCCGCAGACTC
TGGAGGCGCGGGGATGCCAGCACATCGGCCTGCTGCTCCTCGCTGATCTT
TTCGCTGAGCGTCACATGGGCCCTGCCACTCATCAGCTTCTGTTTGCGGA
TATTCGTCAGCCAGTCCACCTTCTCCTTCGCCTTCCGCTTGGGCGACATG
ATGCCCAGGTGCGGTGCCTCGCCATCCAGCACGTAATTGGGCAGGTTGGA
GGTGGGCGAGTAGATGGCAGCGGAGATCGGCGGCGGATTAAGCGCGTCTG
CAGCCACCGCTGCTGCTGCCGCTGACGTGGTTGGCGGGGAGGTGTACACA
TGGTTGACATTCTCACTCAAAGGGGAATGACTTGGTGTGCTGAGAAGCTT
GTGCAGTGGTGAGACATCCTCCGCGGCAGAGTTCTCCTTTTGTCTCTTGC
TCGGCGAGGCATCTTCCTCGTTTATGGACTGAGGTTGTATGTGCCTGCAA
GCAGTTTTCTGGCTAGAAGGTCCAAAGAGCCGCCTTTCACGTGACTCCAG
TGGCTTCGCCCGTTTCTGGGGCTGTTCTGTGGCTTCCG
BS05603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11295-PA | 2310 | l(2)dtl-RA | 1439..2310 | 888..17 | 4285 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 1597..2468 | 888..17 | 4315 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23704347..23705218 | 888..17 | 4315 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:22:07 has no hits.
BS05603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:17 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1439..2310 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:36 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1439..2310 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:12:48 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1597..2471 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:49 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1597..2471 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:49 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23704347..23705221 | 13..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:12:48 Download gff for
BS05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19591870..19592744 | 13..888 | 99 | | Minus |
BS05603.5prime Sequence
805 bp (695 high quality bases) assembled on 2005-12-02
> BS05603.5prime
GAAGTTATCAGTCGACATGAACATTTACAACAAGTTGCGGGCCAGGGAGC
ATGGCTACGGCAATGAGAGGACCTACGACTTCGCCCTGCGCCGCCTTTCC
GTGGCCAAGGAGGACAGCTGGCGGGGCATCGCGCCGGCCAACTACTGCCC
AGACTTCAATCCGGAACCGCCGATCTTCTCCGCCAAGTTCGCCAACTGCG
ATGGCTATCGGCACATCCTGGCGATCGCCAACGAGGACGGCAAGATCACG
CTGCAGGACACCACCCAGCGCAACCACCAGCCGGAGGAGCAGTCCCTGGT
GGGCCCGCAGTGCCACTTCAACGCCGTTTTCGATCTGGAATGGGCACCCG
GCCAGATGCGCTTCGTCTCCGCCTCGGGCGATCACACTGCCAGACTGTGG
GAGGTGGCGGGCTCCGGCATACGCGGCCTGAACTCCTATGTGGGTCACAC
AAGGTCCGTCAAGTCGGCGGCCTTTAAGCGCACCGATCCCGCTGTCTTCG
CCACCGGCGGCCGTGATGGCGCCATTCTCATCTGGGACATCAGGGCCAAT
CTCAATATGGACCTCACGTCACGCGTGGACAACTGCATCTACAGCGGTCA
CACGGGCGGACCGGGCACGCCAGTCTCACAGCGCAAGCAGCGCACACGCA
CTCCCAAGATGGCCGGAGGAACCACCTCGAGCAGCATCACTGGCTTGGCC
TTCCAGGACAACGATACGTTGATCTCCTGTGGTGCCGGTGACGGAGTCAT
CAAGGTGTGGGACCTGCGGCGCAACTACACAGCCTACAAAAAGGAGCCAC
TGCCC
BS05603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11295-PA | 2310 | l(2)dtl-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 159..947 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23702951..23703697 | 59..805 | 3735 | 100 | Plus |
| 2R | 25286936 | 2R | 23702635..23702678 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:32:10 has no hits.
BS05603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:18 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:37 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:03 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 151..947 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:55:53 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 151..947 | 10..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:55:53 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23702627..23702677 | 10..59 | 94 | -> | Plus |
| 2R | 23702952..23703697 | 60..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:03 Download gff for
BS05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19590150..19590200 | 10..59 | 94 | -> | Plus |
| arm_2R | 19590475..19591220 | 60..805 | 100 | | Plus |
BS05603.complete Sequence
2342 bp assembled on 2008-01-02
GenBank Submission: FJ635156
> BS05603.complete
GAAGTTATCAGTCGACATGAACATTTACAACAAGTTGCGGGCCAGGGAGC
ATGGCTACGGCAATGAGAGGACCTACGACTTCGCCCTGCGCCGCCTTTCC
GTGGCCAAGGAGGACAGCTGGCGGGGCATCGCGCCGGCCAACTACTGCCC
AGACTTCAATCCGGAACCGCCGATCTTCTCCGCCAAGTTCGCCAACTGCG
ATGGCTATCGGCACATCCTGGCGATCGCCAACGAGGACGGCAAGATCACG
CTGCAGGACACCACCCAGCGCAACCACCAGCCGGAGGAGCAGTCCCTGGT
GGGCCCGCAGTGCCACTTCAACGCCGTTTTCGATCTGGAATGGGCACCCG
GCCAGATGCGCTTCGTCTCCGCCTCGGGCGATCACACTGCCAGACTGTGG
GAGGTGGCGGGCTCCGGCATACGCGGCCTGAACTCCTATGTGGGTCACAC
AAGGTCCGTCAAGTCGGCGGCCTTTAAGCGCACCGATCCCGCTGTCTTCG
CCACCGGCGGCCGTGATGGCGCCATTCTCATCTGGGACATCAGGGCCAAT
CTCAATATGGACCTCACGTCACGCGTGGACAACTGCATCTACAGCGGTCA
CACGGGCGGACCGGGCACGCCAGTCTCACAGCGCAAGCAGCGCACACGCA
CTCCCAAGATGGCCGGAGGAACCACCTCGAGCAGCATCACTGGCTTGGCC
TTCCAGGACAACGATACGTTGATCTCCTGTGGTGCCGGTGACGGAGTCAT
CAAGGTGTGGGACCTGCGGCGCAACTACACAGCCTACAAAAAGGAGCCAC
TGCCCAGGCACAAGCTGCCATATGCCGGCAGCTCCACCTTCCGTGGATTC
ACCAACCTCATTGTGGACGCGTCAGGCACGAGGCTGTATGCCAACTGCAT
GGACAACACCATCTATTGCTACAATCTGGCCTCCTACTCGCAGCGCCCGC
TGGCGTGCTACAAGGGACTCCTTAACTCCACGTTCTACATCAAATCCTGC
CTCAGCCCGGACGGCAAGTATCTGCTGAGCGGAAGCAGCGACGAGCGGGC
TTACATCTGGAACCTGGACCACGCCGAGGAGCCGCTCGTTGCACTGGCCG
GACACACGGTGGAGGTAACCTGCGTGGCCTGGGGCTCCAGCCACGATTGC
CCCATTGTCACGTGCAGCGATGATGCGCGTCACAAAATCTGGCGGATTGG
ACCCGACCTGGATGGCCTCAGCGAGGCGGAGCGGGCGGAAAAGTACCGAG
GAACTGCCTCCTACGTCAGGGAGTTCGGCAAGAAGGCATTTGGTCCGTCT
AGTGGAAATCACAAGTACAATCTTCGAGATCTGGAGTCCACGCCAAGATC
TCTGAAGCGCCTTATGGATCAAAATGAAAGGACGCCAGGTTCCGTGGAAA
AGACGACGACCAAGCGTTCGTTCCTGGAAATGCTGGGCGTAGCTGGCCAG
GAGACGGAAGCCACAGAACAGCCCCAGAAACGGGCGAAGCCACTGGAGTC
ACGTGGAAGGCGGCTCTTTGGACCTTCTAGCCAGGAAACTGCTTGCAGGC
ACATACAACTTCAGTCCATAAACGAGGAAGATGCCTCGCCGAGCAAGAGA
CAAAAGGAGAACTCTGCCGCGGAGGATGTCTCACCACTGCACAAGCTTCT
CAGCACACCAAGTCATTCCCCTTTGAGTGAGAATGTCAACCATGTGTACA
CCTCCCCGCCAACCACGTCAGCGGCAGCAGCAGCGGTGGCTGCAGACGCG
CTTAATCCGCCGCCGATCTCCGCTGCCATCTACTCGCCCACCTCCAACCT
GCCCAATTACGTGCTGGATGGCGAGGCACCGCACCTGGGCATCATGTCGC
CCAAGCGGAAGGCGAAGGAGAAGGTGGACTGGCTGACGAATATCCGCAAA
CAGAAGCTGATGAGTGGCAGGGCCCATGTGACGCTCAGCGAAAAGATCAG
CGAGGAGCAGCAGGCCGATGTGCTGGCATCCCCGCGCCTCCAGAGTCTGC
GGCAGTCAGAGTGCAGTCCCAGGATACACGCCTCGCCCCGCAGACGCATC
TCCCATACGGACGGAGGCGGTGGCACGCCGGCTGGCAGCTCCTCGCACTC
CCATTCCCAATCCCAGCCAAAAACGCCCACTTCCAGTAGGCGAAACAGCG
AGACGACGCTCCTGCGATTCTTTAGCATTCAGAGAAGTAGCAGTGTGCCG
GCGGAGGAAACAACGACAACGAATGCGGCTCCCTCCTCTTCTGATCCCCA
TCCCCCGGCAGTGACTGCGCCCGCAGCCACGCCCCTCAGCATGCGCACGC
CCACGACGGCGGTGGGCAGCGATTGAAAGCTTTCTAGACCAT
BS05603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2310 | CG11295-PA | 1..2310 | 17..2326 | 11550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 159..2468 | 17..2326 | 11550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23702951..23705218 | 59..2326 | 11340 | 100 | Plus |
| 2R | 25286936 | 2R | 23702635..23702678 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:04:47 has no hits.
BS05603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:54 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1..2310 | 17..2326 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:29 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 157..2465 | 17..2325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:11 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 159..2467 | 17..2325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:55 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 149..2469 | 10..2330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:54 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 159..2467 | 17..2325 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:54 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23702635..23702677 | 17..59 | 100 | -> | Plus |
| 2R | 23702952..23705217 | 60..2325 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:11 Download gff for
BS05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19590158..19590200 | 17..59 | 100 | -> | Plus |
| arm_2R | 19590475..19592740 | 60..2325 | 100 | | Plus |
BS05603.pep Sequence
Translation from 16 to 2325
> BS05603.pep
MNIYNKLRAREHGYGNERTYDFALRRLSVAKEDSWRGIAPANYCPDFNPE
PPIFSAKFANCDGYRHILAIANEDGKITLQDTTQRNHQPEEQSLVGPQCH
FNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKS
AAFKRTDPAVFATGGRDGAILIWDIRANLNMDLTSRVDNCIYSGHTGGPG
TPVSQRKQRTRTPKMAGGTTSSSITGLAFQDNDTLISCGAGDGVIKVWDL
RRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIY
CYNLASYSQRPLACYKGLLNSTFYIKSCLSPDGKYLLSGSSDERAYIWNL
DHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRIGPDLDG
LSEAERAEKYRGTASYVREFGKKAFGPSSGNHKYNLRDLESTPRSLKRLM
DQNERTPGSVEKTTTKRSFLEMLGVAGQETEATEQPQKRAKPLESRGRRL
FGPSSQETACRHIQLQSINEEDASPSKRQKENSAAEDVSPLHKLLSTPSH
SPLSENVNHVYTSPPTTSAAAAAVAADALNPPPISAAIYSPTSNLPNYVL
DGEAPHLGIMSPKRKAKEKVDWLTNIRKQKLMSGRAHVTLSEKISEEQQA
DVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQ
PKTPTSSRRNSETTLLRFFSIQRSSSVPAEETTTTNAAPSSSDPHPPAVT
APAATPLSMRTPTTAVGSD*
BS05603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-PA | 769 | CG11295-PA | 1..769 | 1..769 | 4050 | 100 | Plus |
| CG7611-PJ | 630 | CG7611-PJ | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PI | 630 | CG7611-PI | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PA | 630 | CG7611-PA | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PD | 630 | CG7611-PD | 525..623 | 315..415 | 163 | 36.3 | Plus |
