Clone BS05606 Report

Search the DGRC for BS05606

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG5171-RA
Protein status:BS05606.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05606.3prime Sequence

852 bp (760 high quality bases) assembled on 2005-12-02

> BS05606.3prime
ATGGTCTAGAAAGCTTCTAAGAAACATACACATTGGCTATCCATTTGAGA
AGATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTG
AATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCA
CTCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTC
ACTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGC
AGCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCAT
GGGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAAC
TGCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGT
GAGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCT
CCTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGT
AGCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATG
ATTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTT
TCAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCT
ATCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGG
ATTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAA
CTGGACTTTCAGAAATTAGATACCCAGGTAAATTATTCGCAAAATCCTCG
AGATTACTAATTACAGGTGCCACTTGTTTCTCAGGCATGTCGACTGATAA
CT

BS05606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 1..822 838..17 4110 100 Minus
CG5171-PA 822 CG5171-RA 1..822 838..17 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..1021 838..16 4115 100 Minus
CG5171-RE 1137 CG5171-RE 154..976 838..16 4115 100 Minus
CG5171-RD 1156 CG5171-RD 173..995 838..16 4115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 774..149 3130 100 Minus
2L 23513712 2L 7404230..7404365 151..16 680 100 Minus
2L 23513712 2L 7403297..7403364 838..771 340 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:20:54 has no hits.

BS05606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:21 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 17..838 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:43 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 17..838 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:56 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 143..971 16..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:57 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 167..995 16..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:57 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7403291..7403361 774..844 95 -> Minus
2L 7403542..7404163 152..773 100 -> Minus
2L 7404230..7404366 14..151 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:56 Download gff for BS05606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403291..7403361 774..844 95 -> Minus
arm_2L 7403542..7404163 152..773 100 -> Minus
arm_2L 7404230..7404366 14..151 98 -> Minus

BS05606.5prime Sequence

782 bp (726 high quality bases) assembled on 2005-12-02

> BS05606.5prime
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTTCGGTTGCCCA

BS05606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 1..766 17..782 3805 99.8 Plus
CG5171-PA 822 CG5171-RA 1..766 17..782 3805 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..964 17..782 3815 99.9 Plus
CG5171-RE 1137 CG5171-RE 154..919 17..782 3815 99.9 Plus
CG5171-RD 1156 CG5171-RD 173..938 17..782 3815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 81..706 3130 100 Plus
2L 23513712 2L 7404230..7404308 704..782 380 98.7 Plus
2L 23513712 2L 7403297..7403364 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:48:52 has no hits.

BS05606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:22 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:44 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:29 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 143..913 11..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:25 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 167..937 11..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:25 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7403291..7403361 11..81 95 -> Plus
2L 7403542..7404163 82..703 100 -> Plus
2L 7404230..7404307 704..781 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:29 Download gff for BS05606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403291..7403361 11..81 95 -> Plus
arm_2L 7403542..7404163 82..703 100 -> Plus
arm_2L 7404230..7404307 704..781 98   Plus

BS05606.complete Sequence

854 bp (854 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635157

> BS05606.complete
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTTAGAAGCTTTCTAGA
CCAT

BS05606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 822 CG5171-PF 1..822 17..838 4110 100 Plus
CG5171-RE 822 CG5171-PE 1..822 17..838 4110 100 Plus
CG5171-RD 891 CG5171-PD 70..891 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..1021 17..839 4115 100 Plus
CG5171-RE 1137 CG5171-RE 154..976 17..839 4115 100 Plus
CG5171-RD 1156 CG5171-RD 173..995 17..839 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 81..706 3130 100 Plus
2L 23513712 2L 7404230..7404365 704..839 680 100 Plus
2L 23513712 2L 7403297..7403364 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:10:18 has no hits.

BS05606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:38 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:33 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 149..977 11..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:38 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 149..970 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:39 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 149..977 11..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:28 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 173..994 17..838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:28 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7403297..7403361 17..81 100 -> Plus
2L 7403542..7404163 82..703 100 -> Plus
2L 7404230..7404364 704..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:38 Download gff for BS05606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403297..7403361 17..81 100 -> Plus
arm_2L 7403542..7404163 82..703 100 -> Plus
arm_2L 7404230..7404364 704..838 100   Plus

BS05606.pep Sequence

Translation from 16 to 837

> BS05606.pep
MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT
KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE
IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY
RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI
LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA
DFRLPKQAVMTDLLKWIANVYVS*

BS05606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PF 273 CG5171-PF 1..273 1..273 1417 100 Plus
CG5171-PE 273 CG5171-PE 1..273 1..273 1417 100 Plus
CG5171-PA 273 CG5171-PA 1..273 1..273 1417 100 Plus
CG5171-PB 273 CG5171-PB 1..273 1..273 1417 100 Plus
CG5171-PD 296 CG5171-PD 24..296 1..273 1417 100 Plus