Clone Sequence Records
BS05606.3prime Sequence
852 bp (760 high quality bases) assembled on 2005-12-02
> BS05606.3prime
ATGGTCTAGAAAGCTTCTAAGAAACATACACATTGGCTATCCATTTGAGA
AGATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTG
AATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCA
CTCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTC
ACTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGC
AGCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCAT
GGGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAAC
TGCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGT
GAGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCT
CCTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGT
AGCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATG
ATTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTT
TCAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCT
ATCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGG
ATTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAA
CTGGACTTTCAGAAATTAGATACCCAGGTAAATTATTCGCAAAATCCTCG
AGATTACTAATTACAGGTGCCACTTGTTTCTCAGGCATGTCGACTGATAA
CT
BS05606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 1..822 | 838..17 | 4110 | 100 | Minus |
CG5171-PA | 822 | CG5171-RA | 1..822 | 838..17 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..1021 | 838..16 | 4115 | 100 | Minus |
CG5171-RE | 1137 | CG5171-RE | 154..976 | 838..16 | 4115 | 100 | Minus |
CG5171-RD | 1156 | CG5171-RD | 173..995 | 838..16 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 774..149 | 3130 | 100 | Minus |
2L | 23513712 | 2L | 7404230..7404365 | 151..16 | 680 | 100 | Minus |
2L | 23513712 | 2L | 7403297..7403364 | 838..771 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:20:54 has no hits.
BS05606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:21 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:43 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 17..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:17:56 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 143..971 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:57 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 167..995 | 16..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:57 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403291..7403361 | 774..844 | 95 | -> | Minus |
2L | 7403542..7404163 | 152..773 | 100 | -> | Minus |
2L | 7404230..7404366 | 14..151 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:17:56 Download gff for
BS05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403291..7403361 | 774..844 | 95 | -> | Minus |
arm_2L | 7403542..7404163 | 152..773 | 100 | -> | Minus |
arm_2L | 7404230..7404366 | 14..151 | 98 | -> | Minus |
BS05606.5prime Sequence
782 bp (726 high quality bases) assembled on 2005-12-02
> BS05606.5prime
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTTCGGTTGCCCA
BS05606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 1..766 | 17..782 | 3805 | 99.8 | Plus |
CG5171-PA | 822 | CG5171-RA | 1..766 | 17..782 | 3805 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..964 | 17..782 | 3815 | 99.9 | Plus |
CG5171-RE | 1137 | CG5171-RE | 154..919 | 17..782 | 3815 | 99.9 | Plus |
CG5171-RD | 1156 | CG5171-RD | 173..938 | 17..782 | 3815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 81..706 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404308 | 704..782 | 380 | 98.7 | Plus |
2L | 23513712 | 2L | 7403297..7403364 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:48:52 has no hits.
BS05606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:22 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:44 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:29 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 143..913 | 11..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:25 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 167..937 | 11..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:25 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403291..7403361 | 11..81 | 95 | -> | Plus |
2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
2L | 7404230..7404307 | 704..781 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:29 Download gff for
BS05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403291..7403361 | 11..81 | 95 | -> | Plus |
arm_2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
arm_2L | 7404230..7404307 | 704..781 | 98 | | Plus |
BS05606.complete Sequence
854 bp (854 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635157
> BS05606.complete
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTTAGAAGCTTTCTAGA
CCAT
BS05606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 822 | CG5171-PF | 1..822 | 17..838 | 4110 | 100 | Plus |
CG5171-RE | 822 | CG5171-PE | 1..822 | 17..838 | 4110 | 100 | Plus |
CG5171-RD | 891 | CG5171-PD | 70..891 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..1021 | 17..839 | 4115 | 100 | Plus |
CG5171-RE | 1137 | CG5171-RE | 154..976 | 17..839 | 4115 | 100 | Plus |
CG5171-RD | 1156 | CG5171-RD | 173..995 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 81..706 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404365 | 704..839 | 680 | 100 | Plus |
2L | 23513712 | 2L | 7403297..7403364 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:18 has no hits.
BS05606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:38 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:33 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 149..977 | 11..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:38 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 149..970 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:39 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 149..977 | 11..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:28 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 173..994 | 17..838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:28 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403297..7403361 | 17..81 | 100 | -> | Plus |
2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
2L | 7404230..7404364 | 704..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:38 Download gff for
BS05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403297..7403361 | 17..81 | 100 | -> | Plus |
arm_2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
arm_2L | 7404230..7404364 | 704..838 | 100 | | Plus |
BS05606.pep Sequence
Translation from 16 to 837
> BS05606.pep
MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT
KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE
IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY
RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI
LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA
DFRLPKQAVMTDLLKWIANVYVS*
BS05606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PF | 273 | CG5171-PF | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PE | 273 | CG5171-PE | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PA | 273 | CG5171-PA | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PB | 273 | CG5171-PB | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PD | 296 | CG5171-PD | 24..296 | 1..273 | 1417 | 100 | Plus |