Clone BS05607 Report

Search the DGRC for BS05607

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG9853-RA
Protein status:BS05607.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05607.3prime Sequence

774 bp (772 high quality bases) assembled on 2005-12-02

> BS05607.3prime
ATGGTCTAGAAAGCTTCTATTCCAGTTCGTTATTCTCGTTTTGCCGCCTC
AGGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAG
GCGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAAT
GAGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACG
TACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCG
TAAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGA
AGTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGC
AGCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTT
CCGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGT
CCATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGC
CCACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTC
AATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTG
GGTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGA
ATAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGC
CCCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTC
CTCGCTTCTCTAACGTGTCCACCA

BS05607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 263..1020 774..17 3790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 379..1136 774..17 3790 100 Minus
CG9853-RB 1818 CG9853-RB 866..1623 774..17 3790 100 Minus
CG9853-RA 1331 CG9853-RA 379..1136 774..17 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398753..4399385 17..649 3165 100 Plus
3R 32079331 3R 4399446..4399570 650..774 625 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:06:32 has no hits.

BS05607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:23 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 264..1020 17..773 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:46 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 264..1020 17..773 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:22:11 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 380..1136 17..773 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:56 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 380..1136 17..773 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:56 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4398753..4399385 17..649 100 <- Plus
3R 4399446..4399569 650..773 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:22:11 Download gff for BS05607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224475..225107 17..649 100 <- Plus
arm_3R 225168..225291 650..773 100   Plus

BS05607.5prime Sequence

911 bp (842 high quality bases) assembled on 2005-12-02

> BS05607.5prime
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTNAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCC

BS05607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 1..895 17..911 4456 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 117..1011 17..911 4464 99.9 Plus
CG9853-RB 1818 CG9853-RB 604..1498 17..911 4464 99.9 Plus
CG9853-RA 1331 CG9853-RA 117..1011 17..911 4464 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398878..4399385 911..404 2529 99.8 Minus
3R 32079331 3R 4399446..4399681 403..168 1180 100 Minus
3R 32079331 3R 4399739..4399893 171..17 775 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:20:56 has no hits.

BS05607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:24 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:47 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:05 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1011 17..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:34 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1011 17..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:34 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4398878..4399385 404..911 99 <- Minus
3R 4399446..4399680 169..403 100 <- Minus
3R 4399742..4399893 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:05 Download gff for BS05607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224600..225107 404..911 99 <- Minus
arm_3R 225168..225402 169..403 100 <- Minus
arm_3R 225464..225615 17..168 100   Minus

BS05607.complete Sequence

1052 bp (1052 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635158

> BS05607.complete
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCTTATGGCGGGCTTTGAGGAAGATGATGCGGACGATCATGACACGACC
CTGAGGCGGCAAAACGAGAATAACGAACTGGAATAGAAGCTTTCTAGACC
AT

BS05607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1020 CG9853-PC 1..1020 17..1036 5100 100 Plus
CG9853-RB 1020 CG9853-PB 1..1020 17..1036 5100 100 Plus
CG9853-RA 1020 CG9853-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 117..1136 17..1036 5100 100 Plus
CG9853-RB 1818 CG9853-RB 604..1623 17..1036 5100 100 Plus
CG9853-RA 1331 CG9853-RA 117..1136 17..1036 5100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398753..4399385 1036..404 3165 100 Minus
3R 32079331 3R 4399446..4399681 403..168 1180 100 Minus
3R 32079331 3R 4399739..4399893 171..17 775 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:15:51 has no hits.

BS05607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:40 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 1..1020 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:34 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 604..1623 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:20 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1136 17..1036 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:40 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 604..1623 17..1036 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:57 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1136 17..1036 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:57 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4398753..4399385 404..1036 100 <- Minus
3R 4399446..4399680 169..403 100 <- Minus
3R 4399742..4399893 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:20 Download gff for BS05607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224475..225107 404..1036 100 <- Minus
arm_3R 225168..225402 169..403 100 <- Minus
arm_3R 225464..225615 17..168 100   Minus

BS05607.pep Sequence

Translation from 16 to 1035

> BS05607.pep
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELE*

BS05607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PC 339 CG9853-PC 1..339 1..339 1764 100 Plus
CG9853-PB 339 CG9853-PB 1..339 1..339 1764 100 Plus
CG9853-PA 339 CG9853-PA 1..339 1..339 1764 100 Plus