Clone Sequence Records
BS05607.3prime Sequence
774 bp (772 high quality bases) assembled on 2005-12-02
> BS05607.3prime
ATGGTCTAGAAAGCTTCTATTCCAGTTCGTTATTCTCGTTTTGCCGCCTC
AGGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAG
GCGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAAT
GAGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACG
TACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCG
TAAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGA
AGTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGC
AGCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTT
CCGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGT
CCATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGC
CCACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTC
AATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTG
GGTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGA
ATAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGC
CCCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTC
CTCGCTTCTCTAACGTGTCCACCA
BS05607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 263..1020 | 774..17 | 3790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 379..1136 | 774..17 | 3790 | 100 | Minus |
CG9853-RB | 1818 | CG9853-RB | 866..1623 | 774..17 | 3790 | 100 | Minus |
CG9853-RA | 1331 | CG9853-RA | 379..1136 | 774..17 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398753..4399385 | 17..649 | 3165 | 100 | Plus |
3R | 32079331 | 3R | 4399446..4399570 | 650..774 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:06:32 has no hits.
BS05607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:23 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 264..1020 | 17..773 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:46 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 264..1020 | 17..773 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:22:11 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 380..1136 | 17..773 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:56 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 380..1136 | 17..773 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:56 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398753..4399385 | 17..649 | 100 | <- | Plus |
3R | 4399446..4399569 | 650..773 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:22:11 Download gff for
BS05607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224475..225107 | 17..649 | 100 | <- | Plus |
arm_3R | 225168..225291 | 650..773 | 100 | | Plus |
BS05607.5prime Sequence
911 bp (842 high quality bases) assembled on 2005-12-02
> BS05607.5prime
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTNAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCC
BS05607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 1..895 | 17..911 | 4456 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 117..1011 | 17..911 | 4464 | 99.9 | Plus |
CG9853-RB | 1818 | CG9853-RB | 604..1498 | 17..911 | 4464 | 99.9 | Plus |
CG9853-RA | 1331 | CG9853-RA | 117..1011 | 17..911 | 4464 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398878..4399385 | 911..404 | 2529 | 99.8 | Minus |
3R | 32079331 | 3R | 4399446..4399681 | 403..168 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 4399739..4399893 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:20:56 has no hits.
BS05607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:24 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:47 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:24:05 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1011 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:49:34 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1011 | 17..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:49:34 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398878..4399385 | 404..911 | 99 | <- | Minus |
3R | 4399446..4399680 | 169..403 | 100 | <- | Minus |
3R | 4399742..4399893 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:24:05 Download gff for
BS05607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224600..225107 | 404..911 | 99 | <- | Minus |
arm_3R | 225168..225402 | 169..403 | 100 | <- | Minus |
arm_3R | 225464..225615 | 17..168 | 100 | | Minus |
BS05607.complete Sequence
1052 bp (1052 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635158
> BS05607.complete
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCTTATGGCGGGCTTTGAGGAAGATGATGCGGACGATCATGACACGACC
CTGAGGCGGCAAAACGAGAATAACGAACTGGAATAGAAGCTTTCTAGACC
AT
BS05607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1020 | CG9853-PC | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG9853-RB | 1020 | CG9853-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG9853-RA | 1020 | CG9853-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 117..1136 | 17..1036 | 5100 | 100 | Plus |
CG9853-RB | 1818 | CG9853-RB | 604..1623 | 17..1036 | 5100 | 100 | Plus |
CG9853-RA | 1331 | CG9853-RA | 117..1136 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398753..4399385 | 1036..404 | 3165 | 100 | Minus |
3R | 32079331 | 3R | 4399446..4399681 | 403..168 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 4399739..4399893 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:15:51 has no hits.
BS05607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:40 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:34 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 604..1623 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:20 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1136 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:40 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 604..1623 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:57 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1136 | 17..1036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:57 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398753..4399385 | 404..1036 | 100 | <- | Minus |
3R | 4399446..4399680 | 169..403 | 100 | <- | Minus |
3R | 4399742..4399893 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:20 Download gff for
BS05607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224475..225107 | 404..1036 | 100 | <- | Minus |
arm_3R | 225168..225402 | 169..403 | 100 | <- | Minus |
arm_3R | 225464..225615 | 17..168 | 100 | | Minus |
BS05607.pep Sequence
Translation from 16 to 1035
> BS05607.pep
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELE*
BS05607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PC | 339 | CG9853-PC | 1..339 | 1..339 | 1764 | 100 | Plus |
CG9853-PB | 339 | CG9853-PB | 1..339 | 1..339 | 1764 | 100 | Plus |
CG9853-PA | 339 | CG9853-PA | 1..339 | 1..339 | 1764 | 100 | Plus |