Clone BS05608 Report

Search the DGRC for BS05608

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptBigH1-RA
Protein status:BS05608.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05608.3prime Sequence

730 bp (641 high quality bases) assembled on 2005-12-02

> BS05608.3prime
ATGGTCTAGAAAGCTTCTAGACTTTGCGCTTGCGCTTCGCCTTGGTAGCT
CCTTGAGGAGTCGACGTGGCCTGGGCCTCCATTATGGAAAGATCCGGTGT
GGAGGCTCCCTTTCCAGCCACCAGTTTCTTGACCGCCTTGACTTTCGGCC
TGGCTGCCTTGGGCTGAGCCAGAGTTCCAATGGACTTTCGCGACTTTTTA
GTCTTTCCCGCCTCGGATGAATCCGCTTGTAGCTTGACTTTGGTTTTGGC
CGGCTTCTTTCCCGCTTCAGGAATCGCTGTCTGGGATGTTTCCAGCATGG
CCTGCGCGGCAGCGGATGAAGCTGCTTTAGATGCTGGCGGATTATCCTTG
GTTCCATCCTCGGGCTTCTTCTTTTTTACAGCTTGTTTTGTTTTCCGCTC
GGTTGGTTTACTGGATTTTTCCTTGGAGGCCTTCTTTTCCTTCATCTTCG
CCTTGGCCTCTTTCTTTTGAATCTTCTCCTTTAAAACTTTCTCAACTTTG
GCTTTCTTTTCCTTCTCCTTCTGTTTCTTTGCCTTCATTTTCTCCACAGC
CTTTGAGGAGTTCTTCTGCTTATCGGTGAGTTTAAAGGATCGCTTAACCA
TCACCACTTCGCCGTTGGCTTCGGCCAATTTTAAAGCTCGATGGAGGAGG
CGGGCGGTTTTCTTCGGATCCTTCCACTCCTGACCATTGTCCTTTAGGTA
TGTCATTATGGCCTGAACCGATGAGCCCGA

BS05608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3509-PA 1062 CG3509-RA 349..1062 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 490..1203 730..17 3570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14664381..14664746 382..17 1830 100 Minus
3R 32079331 3R 14663939..14664287 730..382 1745 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:46:36 has no hits.

BS05608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:26 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 350..1062 17..729 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:48 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 350..1062 17..729 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:41 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 498..1219 10..729 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:34 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 491..1212 10..729 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:34 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14663940..14664286 383..729 100 -> Minus
3R 14664381..14664755 10..382 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:41 Download gff for BS05608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489662..10490008 383..729 100 -> Minus
arm_3R 10490103..10490477 10..382 98   Minus

BS05608.5prime Sequence

821 bp (653 high quality bases) assembled on 2005-12-02

> BS05608.5prime
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAGGAT
AATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAAGCCATGCT
GGAAACATCCCAGACAGCGAT

BS05608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3509-PA 1062 CG3509-RA 1..730 17..746 3650 100 Plus
CG3509-PA 1062 CG3509-RA 731..806 746..821 355 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 140..947 15..821 4000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14663589..14664287 15..713 3495 100 Plus
3R 32079331 3R 14664381..14664490 713..821 485 98.2 Plus
Blast to na_te.dros performed on 2015-02-13 08:45:03 has no hits.

BS05608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:27 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 1..806 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:50 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 1..806 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:10 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..954 15..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:44 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 140..947 15..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:44 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14663589..14664286 15..712 100 -> Plus
3R 14664381..14664490 713..821 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:10 Download gff for BS05608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489311..10490008 15..712 100 -> Plus
arm_3R 10490103..10490212 713..821 98   Plus

BS05608.complete Sequence

1094 bp (1094 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635159

> BS05608.complete
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCGGCCAAA
ACCAAAGTCAAGCTACAAGCGGATTCATCCGAGGCGGGAAAGACTAAAAA
GTCGCGAAAGTCCATTGGAACTCTGGCTCAGCCCAAGGCAGCCAGGCCGA
AAGTCAAGGCGGTCAAGAAACTGGTGGCTGGAAAGGGAGCCTCCACACCG
GATCTTTCCATAATGGAGGCCCAGGCCACGTCGACTCCTCAAGGAGCTAC
CAAGGCGAAGCGCAAGCGCAAAGTCTAGAAGCTTTCTAGACCAT

BS05608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1062 CG3509-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 140..1203 15..1078 5320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14663589..14664287 15..713 3495 100 Plus
3R 32079331 3R 14664381..14664746 713..1078 1830 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:53:00 has no hits.

BS05608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:41 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 1..1062 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:37 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..1219 15..1085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:46 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 149..1210 17..1078 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:41 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..1219 15..1085 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:59 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 142..1203 17..1078 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:59 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14664381..14664746 713..1078 100   Plus
3R 14663591..14664286 17..712 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:46 Download gff for BS05608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489313..10490008 17..712 100 -> Plus
arm_3R 10490103..10490468 713..1078 100   Plus

BS05608.pep Sequence

Translation from 16 to 1077

> BS05608.pep
MKLKPVERNDGSDDESEEEMPNDHPESEDSNMGEEEELPEEDEEEMEEDE
EEDRQDGDEVETDNLGADRNPYPTPPPDDGSKLVPPDSDNPKSMVPKPKG
TLISLALMAIGKLASRSGSSVQAIMTYLKDNGQEWKDPKKTARLLHRALK
LAEANGEVVMVKRSFKLTDKQKNSSKAVEKMKAKKQKEKEKKAKVEKVLK
EKIQKKEAKAKMKEKKASKEKSSKPTERKTKQAVKKKKPEDGTKDNPPAS
KAASSAAAQAMLETSQTAIPEAGKKPAKTKVKLQADSSEAGKTKKSRKSI
GTLAQPKAARPKVKAVKKLVAGKGASTPDLSIMEAQATSTPQGATKAKRK
RKV*

BS05608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-PA 353 CG3509-PA 1..353 1..353 1771 100 Plus
futsch-PF 5495 CG34387-PF 1997..2334 10..353 158 20 Plus
futsch-PE 5495 CG34387-PE 1997..2334 10..353 158 20 Plus
futsch-PC 5495 CG34387-PC 1997..2334 10..353 158 20 Plus
futsch-PF 5495 CG34387-PF 3349..3666 7..353 156 21.1 Plus
futsch-PE 5495 CG34387-PE 3349..3666 7..353 156 21.1 Plus
futsch-PC 5495 CG34387-PC 3349..3666 7..353 156 21.1 Plus
His1:CG33861-PA 256 CG33861-PA 56..256 109..318 149 28.3 Plus