Clone Sequence Records
BS05608.3prime Sequence
730 bp (641 high quality bases) assembled on 2005-12-02
> BS05608.3prime
ATGGTCTAGAAAGCTTCTAGACTTTGCGCTTGCGCTTCGCCTTGGTAGCT
CCTTGAGGAGTCGACGTGGCCTGGGCCTCCATTATGGAAAGATCCGGTGT
GGAGGCTCCCTTTCCAGCCACCAGTTTCTTGACCGCCTTGACTTTCGGCC
TGGCTGCCTTGGGCTGAGCCAGAGTTCCAATGGACTTTCGCGACTTTTTA
GTCTTTCCCGCCTCGGATGAATCCGCTTGTAGCTTGACTTTGGTTTTGGC
CGGCTTCTTTCCCGCTTCAGGAATCGCTGTCTGGGATGTTTCCAGCATGG
CCTGCGCGGCAGCGGATGAAGCTGCTTTAGATGCTGGCGGATTATCCTTG
GTTCCATCCTCGGGCTTCTTCTTTTTTACAGCTTGTTTTGTTTTCCGCTC
GGTTGGTTTACTGGATTTTTCCTTGGAGGCCTTCTTTTCCTTCATCTTCG
CCTTGGCCTCTTTCTTTTGAATCTTCTCCTTTAAAACTTTCTCAACTTTG
GCTTTCTTTTCCTTCTCCTTCTGTTTCTTTGCCTTCATTTTCTCCACAGC
CTTTGAGGAGTTCTTCTGCTTATCGGTGAGTTTAAAGGATCGCTTAACCA
TCACCACTTCGCCGTTGGCTTCGGCCAATTTTAAAGCTCGATGGAGGAGG
CGGGCGGTTTTCTTCGGATCCTTCCACTCCTGACCATTGTCCTTTAGGTA
TGTCATTATGGCCTGAACCGATGAGCCCGA
BS05608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3509-PA | 1062 | CG3509-RA | 349..1062 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 490..1203 | 730..17 | 3570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14664381..14664746 | 382..17 | 1830 | 100 | Minus |
3R | 32079331 | 3R | 14663939..14664287 | 730..382 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:46:36 has no hits.
BS05608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:26 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 350..1062 | 17..729 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:48 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 350..1062 | 17..729 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:41 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 498..1219 | 10..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:34 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 491..1212 | 10..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:34 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14663940..14664286 | 383..729 | 100 | -> | Minus |
3R | 14664381..14664755 | 10..382 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:41 Download gff for
BS05608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489662..10490008 | 383..729 | 100 | -> | Minus |
arm_3R | 10490103..10490477 | 10..382 | 98 | | Minus |
BS05608.5prime Sequence
821 bp (653 high quality bases) assembled on 2005-12-02
> BS05608.5prime
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAGGAT
AATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAAGCCATGCT
GGAAACATCCCAGACAGCGAT
BS05608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3509-PA | 1062 | CG3509-RA | 1..730 | 17..746 | 3650 | 100 | Plus |
CG3509-PA | 1062 | CG3509-RA | 731..806 | 746..821 | 355 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 140..947 | 15..821 | 4000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14663589..14664287 | 15..713 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 14664381..14664490 | 713..821 | 485 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:45:03 has no hits.
BS05608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:27 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 1..806 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:50 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 1..806 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:10 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..954 | 15..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:44 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 140..947 | 15..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:44 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14663589..14664286 | 15..712 | 100 | -> | Plus |
3R | 14664381..14664490 | 713..821 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:10 Download gff for
BS05608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489311..10490008 | 15..712 | 100 | -> | Plus |
arm_3R | 10490103..10490212 | 713..821 | 98 | | Plus |
BS05608.complete Sequence
1094 bp (1094 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635159
> BS05608.complete
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCGGCCAAA
ACCAAAGTCAAGCTACAAGCGGATTCATCCGAGGCGGGAAAGACTAAAAA
GTCGCGAAAGTCCATTGGAACTCTGGCTCAGCCCAAGGCAGCCAGGCCGA
AAGTCAAGGCGGTCAAGAAACTGGTGGCTGGAAAGGGAGCCTCCACACCG
GATCTTTCCATAATGGAGGCCCAGGCCACGTCGACTCCTCAAGGAGCTAC
CAAGGCGAAGCGCAAGCGCAAAGTCTAGAAGCTTTCTAGACCAT
BS05608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1062 | CG3509-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 140..1203 | 15..1078 | 5320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14663589..14664287 | 15..713 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 14664381..14664746 | 713..1078 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:53:00 has no hits.
BS05608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:41 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:37 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..1219 | 15..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:46 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 149..1210 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:41 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..1219 | 15..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:59 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 142..1203 | 17..1078 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:59 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14664381..14664746 | 713..1078 | 100 | | Plus |
3R | 14663591..14664286 | 17..712 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:46 Download gff for
BS05608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489313..10490008 | 17..712 | 100 | -> | Plus |
arm_3R | 10490103..10490468 | 713..1078 | 100 | | Plus |
BS05608.pep Sequence
Translation from 16 to 1077
> BS05608.pep
MKLKPVERNDGSDDESEEEMPNDHPESEDSNMGEEEELPEEDEEEMEEDE
EEDRQDGDEVETDNLGADRNPYPTPPPDDGSKLVPPDSDNPKSMVPKPKG
TLISLALMAIGKLASRSGSSVQAIMTYLKDNGQEWKDPKKTARLLHRALK
LAEANGEVVMVKRSFKLTDKQKNSSKAVEKMKAKKQKEKEKKAKVEKVLK
EKIQKKEAKAKMKEKKASKEKSSKPTERKTKQAVKKKKPEDGTKDNPPAS
KAASSAAAQAMLETSQTAIPEAGKKPAKTKVKLQADSSEAGKTKKSRKSI
GTLAQPKAARPKVKAVKKLVAGKGASTPDLSIMEAQATSTPQGATKAKRK
RKV*
BS05608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-PA | 353 | CG3509-PA | 1..353 | 1..353 | 1771 | 100 | Plus |
futsch-PF | 5495 | CG34387-PF | 1997..2334 | 10..353 | 158 | 20 | Plus |
futsch-PE | 5495 | CG34387-PE | 1997..2334 | 10..353 | 158 | 20 | Plus |
futsch-PC | 5495 | CG34387-PC | 1997..2334 | 10..353 | 158 | 20 | Plus |
futsch-PF | 5495 | CG34387-PF | 3349..3666 | 7..353 | 156 | 21.1 | Plus |
futsch-PE | 5495 | CG34387-PE | 3349..3666 | 7..353 | 156 | 21.1 | Plus |
futsch-PC | 5495 | CG34387-PC | 3349..3666 | 7..353 | 156 | 21.1 | Plus |
His1:CG33861-PA | 256 | CG33861-PA | 56..256 | 109..318 | 149 | 28.3 | Plus |