Clone Sequence Records
BS05609.3prime Sequence
839 bp (750 high quality bases) assembled on 2005-12-02
> BS05609.3prime
ATGGTCTAGAAAGCTTTTAGATAATATGGCGTTGTTCATCATAGACTTGC
TTTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGC
ATCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCT
TGCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAA
GGAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCG
TATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAA
GGCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAA
CTCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGA
GCTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTC
CGCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAAC
TGGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGC
TCCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGA
TGATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGT
ATTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAAC
AGCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGA
GCACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCTGA
ACACCATTTAGAATTCCGTAGGCTTCGTCCACGTGGAGC
BS05609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 909 | CG5220-RA | 87..909 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 252..1075 | 839..16 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041705 | 805..122 | 3420 | 100 | Minus |
3R | 32079331 | 3R | 17041763..17041868 | 121..16 | 530 | 100 | Minus |
3R | 32079331 | 3R | 17040933..17040969 | 839..803 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:22:29 has no hits.
BS05609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:28 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 87..909 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:51 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 87..909 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:18:18 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 252..1083 | 7..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:36 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 252..1083 | 7..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:36 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040933..17040967 | 805..839 | 100 | -> | Minus |
3R | 17041023..17041705 | 122..804 | 100 | -> | Minus |
3R | 17041763..17041876 | 7..121 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:18:18 Download gff for
BS05609.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866655..12866689 | 805..839 | 100 | -> | Minus |
arm_3R | 12866745..12867427 | 122..804 | 100 | -> | Minus |
arm_3R | 12867485..12867598 | 7..121 | 96 | | Minus |
BS05609.5prime Sequence
780 bp (733 high quality bases) assembled on 2005-12-02
> BS05609.5prime
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAAGTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCC
BS05609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 909 | CG5220-RA | 1..764 | 17..780 | 3770 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 166..929 | 17..780 | 3790 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041665 | 137..780 | 3190 | 99.7 | Plus |
3R | 32079331 | 3R | 17040847..17040969 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:19:22 has no hits.
BS05609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:29 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:53 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:27 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..929 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:39 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..929 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:39 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040847..17040967 | 17..137 | 100 | -> | Plus |
3R | 17041023..17041665 | 138..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:27 Download gff for
BS05609.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866569..12866689 | 17..137 | 100 | -> | Plus |
arm_3R | 12866745..12867387 | 138..780 | 99 | | Plus |
BS05609.complete Sequence
941 bp (941 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635160
> BS05609.complete
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGACTTCCT
CCTCAGATGAATCCAAATCAAATTTAGAGTATGTTTACGATGCTGTTATG
GACGACGCATCTTATCCCCTGGAATTTAAAGAGATTCTAAAGCAAGTCTA
TGATGAACAACGCCATATTATCTAAAAGCTTTCTAGACCAT
BS05609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 909 | CG5220-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 166..1075 | 17..926 | 4550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041705 | 137..820 | 3420 | 100 | Plus |
3R | 32079331 | 3R | 17040847..17040969 | 17..139 | 615 | 100 | Plus |
3R | 32079331 | 3R | 17041763..17041868 | 821..926 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:36:52 has no hits.
BS05609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:26 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:20 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 164..1081 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:16 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..1072 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:26 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 164..1081 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:15 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..1072 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:15 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040847..17040967 | 17..137 | 100 | -> | Plus |
3R | 17041023..17041705 | 138..820 | 100 | -> | Plus |
3R | 17041763..17041865 | 821..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:16 Download gff for
BS05609.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866569..12866689 | 17..137 | 100 | -> | Plus |
arm_3R | 12866745..12867427 | 138..820 | 100 | -> | Plus |
arm_3R | 12867485..12867587 | 821..923 | 100 | | Plus |
BS05609.pep Sequence
Translation from 16 to 924
> BS05609.pep
MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCA
APGSWSQVLSRKLYDTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDIT
KQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI
ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEA
FVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSEVNRRLVPFIACGDLN
GLSDPEEGKTSSSDESKSNLEYVYDAVMDDASYPLEFKEILKQVYDEQRH
II*
BS05609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 302 | CG5220-PA | 1..302 | 1..302 | 1556 | 100 | Plus |
CG7009-PA | 320 | CG7009-PA | 1..213 | 1..215 | 693 | 62.8 | Plus |
CG8939-PA | 817 | CG8939-PA | 7..212 | 1..219 | 315 | 36.1 | Plus |
CG11447-PA | 250 | CG11447-PA | 48..244 | 10..207 | 200 | 28.8 | Plus |