Clone BS05609 Report

Search the DGRC for BS05609

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG5220-RA
Protein status:BS05609.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05609.3prime Sequence

839 bp (750 high quality bases) assembled on 2005-12-02

> BS05609.3prime
ATGGTCTAGAAAGCTTTTAGATAATATGGCGTTGTTCATCATAGACTTGC
TTTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGC
ATCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCT
TGCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAA
GGAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCG
TATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAA
GGCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAA
CTCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGA
GCTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTC
CGCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAAC
TGGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGC
TCCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGA
TGATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGT
ATTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAAC
AGCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGA
GCACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCTGA
ACACCATTTAGAATTCCGTAGGCTTCGTCCACGTGGAGC

BS05609.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 909 CG5220-RA 87..909 839..17 4115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 252..1075 839..16 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041705 805..122 3420 100 Minus
3R 32079331 3R 17041763..17041868 121..16 530 100 Minus
3R 32079331 3R 17040933..17040969 839..803 185 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:22:29 has no hits.

BS05609.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:28 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 87..909 17..839 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:51 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 87..909 17..839 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:18:18 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 252..1083 7..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:36 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 252..1083 7..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:36 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17040933..17040967 805..839 100 -> Minus
3R 17041023..17041705 122..804 100 -> Minus
3R 17041763..17041876 7..121 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:18:18 Download gff for BS05609.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866655..12866689 805..839 100 -> Minus
arm_3R 12866745..12867427 122..804 100 -> Minus
arm_3R 12867485..12867598 7..121 96   Minus

BS05609.5prime Sequence

780 bp (733 high quality bases) assembled on 2005-12-02

> BS05609.5prime
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAAGTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCC

BS05609.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 909 CG5220-RA 1..764 17..780 3770 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 166..929 17..780 3790 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041665 137..780 3190 99.7 Plus
3R 32079331 3R 17040847..17040969 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:19:22 has no hits.

BS05609.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:29 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:53 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:27 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..929 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:39 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..929 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:39 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17040847..17040967 17..137 100 -> Plus
3R 17041023..17041665 138..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:27 Download gff for BS05609.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866569..12866689 17..137 100 -> Plus
arm_3R 12866745..12867387 138..780 99   Plus

BS05609.complete Sequence

941 bp (941 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635160

> BS05609.complete
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGACTTCCT
CCTCAGATGAATCCAAATCAAATTTAGAGTATGTTTACGATGCTGTTATG
GACGACGCATCTTATCCCCTGGAATTTAAAGAGATTCTAAAGCAAGTCTA
TGATGAACAACGCCATATTATCTAAAAGCTTTCTAGACCAT

BS05609.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 909 CG5220-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 166..1075 17..926 4550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041705 137..820 3420 100 Plus
3R 32079331 3R 17040847..17040969 17..139 615 100 Plus
3R 32079331 3R 17041763..17041868 821..926 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:36:52 has no hits.

BS05609.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:26 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:20 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 164..1081 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:16 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..1072 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:26 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 164..1081 17..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:15 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..1072 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:15 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17040847..17040967 17..137 100 -> Plus
3R 17041023..17041705 138..820 100 -> Plus
3R 17041763..17041865 821..923 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:16 Download gff for BS05609.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866569..12866689 17..137 100 -> Plus
arm_3R 12866745..12867427 138..820 100 -> Plus
arm_3R 12867485..12867587 821..923 100   Plus

BS05609.pep Sequence

Translation from 16 to 924

> BS05609.pep
MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCA
APGSWSQVLSRKLYDTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDIT
KQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI
ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEA
FVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSEVNRRLVPFIACGDLN
GLSDPEEGKTSSSDESKSNLEYVYDAVMDDASYPLEFKEILKQVYDEQRH
II*

BS05609.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 302 CG5220-PA 1..302 1..302 1556 100 Plus
CG7009-PA 320 CG7009-PA 1..213 1..215 693 62.8 Plus
CG8939-PA 817 CG8939-PA 7..212 1..219 315 36.1 Plus
CG11447-PA 250 CG11447-PA 48..244 10..207 200 28.8 Plus