Clone Sequence Records
BS05610.3prime Sequence
873 bp (704 high quality bases) assembled on 2005-12-02
> BS05610.3prime
ATGGTCTAGAAAGCTTTTAAACCTTTTTCACGCGTTTAATGGTTCTTGCC
TTCTTTCTTTCAATCACATCTTTCACGGCCTGCAGTTGTTTCTCCTTGAT
CTTCTTGGTCAGCGCCGATTTGGGTGTCTGTTTGGCGGCTTCCTCCTTCT
TCTTTTTGGCTATCGCAGCCAGTATCTTGGCCGTCTCCACGGGATCATCG
TCCTCGAATAGCTCATCGTTATCCATGCCATCGTAGGCTCTAATAGGTCG
CGTGGCCTCGTGCTTGACCTTTTGCTCCACTCGGTTCACGTACTTATCCT
TGGCAGCCTTCTTAAGTACCTGCCGCTGTTTGGATGGACTCACGTAGTCC
GGATTCTCCCAAATGGTTTTGCCAGTGAAGGAACCATCGAATATTTTTAC
AGGATTCATCACGTAACGCGGCCCGACTTCGGACAAACCGCCATCTTCGG
ATAGAATCTGGAAATTTCTGAACCAGATGCGTTTGTCCAGGTAGGTGAAG
GTGAAAACGTGATCGACGAAGGGCTGGCTCTTGGGATGATGGTTGGGCAC
GGAGTAGGTCTGCACGAACAGCTCCTTGAGCAGCTTAAGGTGCGGCAGCT
CGTCGAATTTGGAGTCAAACGAGAGCAGCGGACGTGATCCCCGCAAGCAG
TTTCCCGTCATCTTCAGTTCGGCCATTGTATGAATGTTTTCGATGAGGAA
TTTAGCGGATGGACCAGTCGATCCCGAGGTGTTGGATATCCACATGTACA
GATCCCTTTTCCGGCGTCCCTCGAACAGCATCGCCTTGTTGCAGTGCTTC
ATTTCGCACATTTCGTTGACCACCGACAAGGTTTTGGAGCGCTCCATTTT
GGATTCGGGTCGGTGGTGCGGCA
BS05610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 1071 | CG11583-RA | 215..1071 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 303..1160 | 873..16 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281597..4282454 | 16..873 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:30:27 has no hits.
BS05610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:30 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32253-PA | 216..1071 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:55 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-PA | 216..1071 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:53:04 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 304..1165 | 12..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:26 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 304..1165 | 12..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:26 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281592..4282453 | 12..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:53:04 Download gff for
BS05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281592..4282453 | 12..872 | 99 | | Plus |
BS05610.5prime Sequence
897 bp (777 high quality bases) assembled on 2005-12-02
> BS05610.5prime
GAAGTTATCAGTCGACATGGGTCGCAAATTCCAGAATAAGAAAAAGAAGG
CCGCGCCGCAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCG
CCACAGAGATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAA
CAAACAGCGCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACC
GGCACTTAATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAA
TCCAAAATGGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGA
AATGAAGCACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGG
ATCTGTACATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCT
AAATTCCTCATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGG
AAACTGCTTGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCG
ACGAGCTGCCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGACCTAC
TCCGTGCCCAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACGTTTT
CACCTTCACCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAGATTC
TATCCGAAGATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGATGAAT
CCTGTAAAAATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGGAGAA
TCCGGACTACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAGGCTG
CCAAGGATAAGTACGTGAACCGAGTGGAGCAAAAGGTCAAGCACGAGGCC
ACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGAGCTATT
BS05610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 1071 | CG11583-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 89..969 | 17..897 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281788..4282550 | 897..135 | 3815 | 100 | Minus |
| 3L | 28110227 | 3L | 4282609..4282729 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:55:32 has no hits.
BS05610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:31 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32253-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:56 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:03 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..969 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:37 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..969 | 17..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:37 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281788..4282548 | 137..897 | 100 | <- | Minus |
| 3L | 4282610..4282729 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:03 Download gff for
BS05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281788..4282548 | 137..897 | 100 | <- | Minus |
| arm_3L | 4282610..4282729 | 17..136 | 100 | | Minus |
BS05610.complete Sequence
1103 bp (1103 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635161
> BS05610.complete
GAAGTTATCAGTCGACATGGGTCGCAAATTCCAGAATAAGAAAAAGAAGG
CCGCGCCGCAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCG
CCACAGAGATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAA
CAAACAGCGCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACC
GGCACTTAATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAA
TCCAAAATGGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGA
AATGAAGCACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGG
ATCTGTACATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCT
AAATTCCTCATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGG
AAACTGCTTGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCG
ACGAGCTGCCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGACCTAC
TCCGTGCCCAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACGTTTT
CACCTTCACCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAGATTC
TATCCGAAGATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGATGAAT
CCTGTAAAAATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGGAGAA
TCCGGACTACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAGGCTG
CCAAGGATAAGTACGTGAACCGAGTGGAGCAAAAGGTCAAGCACGAGGCC
ACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGAGCTATTCGA
GGACGATGATCCCGTGGAGACGGCCAAGATACTGGCTGCGATAGCCAAAA
AGAAGAAGGAGGAAGCCGCCAAACAGACACCCAAATCGGCGCTGACCAAG
AAGATCAAGGAGAAACAACTGCAGGCCGTGAAAGATGTGATTGAAAGAAA
GAAGGCAAGAACCATTAAACGCGTGAAAAAGGTTTAAAAGCTTTCTAGAC
CAT
BS05610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1071 | CG11583-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 89..1160 | 17..1088 | 5360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281597..4282550 | 1088..135 | 4770 | 100 | Minus |
| 3L | 28110227 | 3L | 4282609..4282729 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:51:18 has no hits.
BS05610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:27 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 1..1071 | 17..1087 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:22 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 70..1146 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:17 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1157 | 17..1085 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:27 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 70..1146 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:03 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1157 | 17..1085 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:03 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4282610..4282729 | 17..136 | 100 | | Minus |
| 3L | 4281600..4282548 | 137..1085 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:17 Download gff for
BS05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281600..4282548 | 137..1085 | 100 | <- | Minus |
| arm_3L | 4282610..4282729 | 17..136 | 100 | | Minus |
BS05610.pep Sequence
Translation from 16 to 1086
> BS05610.pep
MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSSDDVVPKKEKWVNKQRVL
VFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCN
KAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRG
SRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYL
DKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVS
PSKQRQVLKKAAKDKYVNRVEQKVKHEATRPIRAYDGMDNDELFEDDDPV
ETAKILAAIAKKKKEEAAKQTPKSALTKKIKEKQLQAVKDVIERKKARTI
KRVKKV*
BS05610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 356 | CG11583-PA | 1..356 | 1..356 | 1861 | 100 | Plus |
