Clone BS05611 Report

Search the DGRC for BS05611

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptGstE13-RA
Protein status:BS05611.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05611.3prime Sequence

711 bp (710 high quality bases) assembled on 2005-12-02

> BS05611.3prime
ATGGTCTAGAAAGCTTCTACTGGCTCTTCGCTTTGTTCTCGGCCATGCAG
CTCAGGATGCGGGTCTGCAGAGCCCGTGCACCCTTGAGGTTGATCTCCTC
GTTGTCGGGCAACAACTTATCCATGCGTTCCATCCATTGCTTAGTCTGCG
GGTACTTTTCCCGTTCCACTGGTATGAGCAGATCCAAGGTCACCAGAGTG
GTGTGGATGGACACGTCGGCAACGCTCAGTTCGTTGCCCACCACGAAACT
TCCTTGCTGCAGAAAGTGTTCCAAGTCGGAGTACGCATTGTGGCAGAGGG
TCAGCGATCGGGGGTTGTATTCTCCCTCGCCACCGTAAATGTTCCGAGCC
ACAATGTCCTTTACCACCTGAAATAGCACTCCGTTCTCGTAGTGCATGCG
ATGGTCGATGTGGGCTCTCCTTTTCAAATCCCGCGGATAGAGTTGGTCAT
TCCCGGCGTACTTGGCTACCAGGAAGCACACGATGGCGTGACTGTCCACG
TAGACCTCGCCATCGCTGTCCACAAACACCGGGATCTGGTGCTGGGGGTT
TAGCTTGACAAATTCCTCGCTCAGGTGTTCCTTCTTGGCGAAGTCAACGG
GTTTGAGCTCCAGGTCCAGTCCAATAAGTTTGGCCACCAGGATGCATGCC
CTGGCAGGAGGACTAAAAAGGGCGTAGTACAGCGTTGGCTTCGACATGTC
GACTGATAACT

BS05611.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..911 697..16 3410 100 Minus
GstE13-RA 862 CG11784-RA 31..712 697..16 3410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123159 555..16 2700 100 Minus
2R 25286936 2R 9122354..9122448 697..603 475 100 Minus
2R 25286936 2R 9122519..9122567 602..554 245 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:18:51 has no hits.

BS05611.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:32 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:57 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..697 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:39:32 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..720 8..706 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:35 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..720 8..706 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:35 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122346..9122448 603..706 96 -> Minus
2R 9122519..9122567 554..602 100 -> Minus
2R 9122622..9123167 8..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:39:32 Download gff for BS05611.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009851..5009953 603..706 96 -> Minus
arm_2R 5010024..5010072 554..602 100 -> Minus
arm_2R 5010127..5010672 8..553 99   Minus

BS05611.5prime Sequence

711 bp (710 high quality bases) assembled on 2005-11-29

> BS05611.5prime
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGTAGAAG
CTTTCTAGACC

BS05611.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..911 17..698 3410 100 Plus
GstE13-RA 862 CG11784-RA 31..712 17..698 3410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123159 159..698 2700 100 Plus
2R 25286936 2R 9122354..9122448 17..111 475 100 Plus
2R 25286936 2R 9122519..9122567 112..160 245 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:05:43 has no hits.

BS05611.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:33 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:46:59 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:24:20 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..720 8..706 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:25 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..720 8..706 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:25 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122346..9122448 8..111 96 -> Plus
2R 9122519..9122567 112..160 100 -> Plus
2R 9122622..9123167 161..706 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:24:20 Download gff for BS05611.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009851..5009953 8..111 96 -> Plus
arm_2R 5010024..5010072 112..160 100 -> Plus
arm_2R 5010127..5010672 161..706 99   Plus

BS05611.complete Sequence

713 bp (713 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635162

> BS05611.complete
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGTAGAAG
CTTTCTAGACCAT

BS05611.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 681 CG11784-PB 1..681 17..697 3405 100 Plus
GstE13-RA 681 CG11784-PA 1..681 17..697 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..911 17..698 3410 100 Plus
GstE13-RA 862 CG11784-RA 31..712 17..698 3410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123159 159..698 2700 100 Plus
2R 25286936 2R 9122354..9122448 17..111 475 100 Plus
2R 25286936 2R 9122519..9122567 112..160 245 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:30:14 has no hits.

BS05611.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:40 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 1..681 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:54 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 54..751 8..706 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:33 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 31..711 17..697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:40 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 54..751 8..706 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:42 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 31..711 17..697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:42 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9122354..9122448 17..111 100 -> Plus
2R 9122519..9122567 112..160 100 -> Plus
2R 9122622..9123158 161..697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:33 Download gff for BS05611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009859..5009953 17..111 100 -> Plus
arm_2R 5010024..5010072 112..160 100 -> Plus
arm_2R 5010127..5010663 161..697 100   Plus

BS05611.pep Sequence

Translation from 16 to 696

> BS05611.pep
MSKPTLYYALFSPPARACILVAKLIGLDLELKPVDFAKKEHLSEEFVKLN
PQHQIPVFVDSDGEVYVDSHAIVCFLVAKYAGNDQLYPRDLKRRAHIDHR
MHYENGVLFQVVKDIVARNIYGGEGEYNPRSLTLCHNAYSDLEHFLQQGS
FVVGNELSVADVSIHTTLVTLDLLIPVEREKYPQTKQWMERMDKLLPDNE
EINLKGARALQTRILSCMAENKAKSQ*

BS05611.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-PB 226 CG11784-PB 1..226 1..226 1178 100 Plus
GstE13-PA 226 CG11784-PA 1..226 1..226 1178 100 Plus
GstE12-PC 223 CG16936-PC 1..223 1..224 436 39.1 Plus
GstE12-PB 223 CG16936-PB 1..223 1..224 436 39.1 Plus
GstE12-PD 223 CG16936-PD 1..223 1..224 436 39.1 Plus