Clone BS05612 Report

Search the DGRC for BS05612

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG18012-RA
Protein status:BS05612.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05612.3prime Sequence

892 bp (689 high quality bases) assembled on 2005-12-02

> BS05612.3prime
ATGGTCTAGAAAGCTTCTATAGAAATGCCTCCAGTACGGGGGCCGCGATC
AGGCGCCAACTCTCCCGCCATCGCAGCTCCTGGAACTCCTGGATTTTGCG
CTGAAAACCAGCTCTTGTCTCCAGGATGCTGGGATTCTTTGGAAAATTTT
CGAACCAAATCCTCAGCTGCTCGGCCAGCTGAACATGGTCGCCAAACACG
AAGCCATTCTCGCCGTGCTTCACCAGCTCATCCAGGCACTTGAAATCGTA
GGCGCAGACAGGCAGCCCGCTGCCGAACATGTCGACCACCTTCATGGGCA
GGTCGAGCCCACTGGTGCTCCAGTGCAGACACACGCCCAGGTCGGCGCTG
GCCAGAACAGTGGGGTAGTCCTCGATCTCTAGCCAGGGCGTGATCACCGA
CACCTTCTGCCATTGCAGCTTCTCGATCTCCGCCACATAGTGCTCCTTTT
GTGGCCCCTTTCCGGTGATGATACACAGCAGGGAAGGATAAACCAACGGC
TCTGCTTGCGCAGTCTCCTCGTAAGCTTGCAAAGCCTTAAGCAGTATACC
GAAGTCCTCGTCCGGCGTCCAACTGGTGCTGGAAACCAGCACGGCTTGTC
GCTGTGGTCTGTACTGCACAACACCGCTGGCCAGCTTTTGGGTAAGAGCG
GTGGCCTCCAGAACATCGGATTGTTCGGCGTCCTTGGCCTGAAACTGTGG
GTAGTCTTTGGCCAGCTTCAGGTACAGCTCGTGCTTGTGAGTCAAGTCGA
TGGGATGGAATTGCGCGGGCGCACGATCATACAGAACTTTGACAGGCCCA
ATGCCCCAGTTTTGCTGCAGATCCTCTTGCATGGCCCGCGTCACACAGAA
GTGTGTGTGTGCCTTGGAGCCGAAGTATCGCTCCAGTCGCCT

BS05612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 1341 CG18012-RA 466..1341 892..17 4355 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RC 1516 CG18012-RC 462..1338 892..16 4370 99.9 Minus
CG18012-RA 1607 CG18012-RA 553..1429 892..16 4370 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17809858..17810419 237..798 2795 99.8 Plus
3R 32079331 3R 17809579..17809800 16..237 1110 100 Plus
3R 32079331 3R 17810479..17810574 797..892 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:02:58 has no hits.

BS05612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:34 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 466..1341 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:01 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 466..1341 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:44 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 553..1439 4..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:43 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 553..1439 4..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:43 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17809569..17809799 4..236 98 <- Plus
3R 17809858..17810418 237..797 99 <- Plus
3R 17810480..17810574 798..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:44 Download gff for BS05612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635291..13635521 4..236 98 <- Plus
arm_3R 13635580..13636140 237..797 99 <- Plus
arm_3R 13636202..13636296 798..892 100   Plus

BS05612.5prime Sequence

863 bp (729 high quality bases) assembled on 2005-11-29

> BS05612.5prime
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTG

BS05612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 1341 CG18012-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1607 CG18012-RA 88..934 17..863 4235 100 Plus
CG18012-RC 1516 CG18012-RC 198..843 218..863 3215 99.8 Plus
CG18012-RC 1516 CG18012-RC 88..201 17..130 570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17810479..17811039 577..17 2805 100 Minus
3R 32079331 3R 17810132..17810419 863..576 1440 100 Minus
Blast to na_te.dros performed 2015-02-11 11:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4593..4630 306..269 109 76.3 Minus

BS05612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:35 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:02 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:30 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 83..934 9..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:05 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 83..934 9..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:05 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17810132..17810418 577..863 100 <- Minus
3R 17810480..17811044 9..576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:30 Download gff for BS05612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635854..13636140 577..863 100 <- Minus
arm_3R 13636202..13636766 9..576 99   Minus

BS05612.complete Sequence

1373 bp (1373 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635163

> BS05612.complete
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTG
TATCATCACCGGAAAGGGGCCACAAAAGGAGCACTATGTGGCGGAGATCG
AGAAGCTGCAATGGCAGAAGGTGTCGGTGATCACGCCCTGGCTAGAGATC
GAGGACTACCCCACTGTTCTGGCCAGCGCCGACCTGGGCGTGTGTCTGCA
CTGGAGCACCAGTGGGCTCGACCTGCCCATGAAGGTGGTCGACATGTTCG
GCAGCGGGCTGCCTGTCTGCGCCTACGATTTCAAGTGCCTGGATGAGCTG
GTGAAGCACGGCGAGAATGGCTTCGTGTTTGGCGACCATGTTCAGCTGGC
CGAGCAGCTGAGGATTTGGTTCGAAAATTTTCCAAAGAATCCCAGCATCC
TGGAGACAAGAGCTGGTTTTCAGCGCAAAATCCAGGAGTTCCAGGAGCTG
CGATGGCGGGAGAGTTGGCGCCTGATCGCGGCCCCCGTACTGGAGGCATT
TCTATAGAAGCTTTCTAGACCAT

BS05612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1341 CG18012-PA 1..1341 17..1357 6705 100 Plus
CG18012-RC 117 CG18012-PC 1..114 17..130 570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1607 CG18012-RA 88..1429 17..1358 6710 100 Plus
CG18012-RC 1516 CG18012-RC 198..1338 218..1358 5690 99.9 Plus
CG18012-RC 1516 CG18012-RC 88..201 17..130 570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17809858..17810419 1137..576 2810 100 Minus
3R 32079331 3R 17810479..17811039 577..17 2805 100 Minus
3R 32079331 3R 17809579..17809800 1358..1137 1110 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:05:10 has no hits.

BS05612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:28 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:23 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 89..1445 9..1370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 88..1428 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:29 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 89..1445 9..1370 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:06 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 88..1428 17..1357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:06 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17809580..17809799 1138..1357 100 <- Minus
3R 17809858..17810418 577..1137 100 <- Minus
3R 17810480..17811039 17..576 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for BS05612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635302..13635521 1138..1357 100 <- Minus
arm_3R 13635580..13636140 577..1137 100 <- Minus
arm_3R 13636202..13636761 17..576 100   Minus

BS05612.pep Sequence

Translation from 16 to 1356

> BS05612.pep
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFL*

BS05612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 446 CG18012-PA 1..446 1..446 2355 100 Plus
CG18012-PC 38 CG18012-PC 1..38 1..38 199 100 Plus