Clone Sequence Records
BS05612.3prime Sequence
892 bp (689 high quality bases) assembled on 2005-12-02
> BS05612.3prime
ATGGTCTAGAAAGCTTCTATAGAAATGCCTCCAGTACGGGGGCCGCGATC
AGGCGCCAACTCTCCCGCCATCGCAGCTCCTGGAACTCCTGGATTTTGCG
CTGAAAACCAGCTCTTGTCTCCAGGATGCTGGGATTCTTTGGAAAATTTT
CGAACCAAATCCTCAGCTGCTCGGCCAGCTGAACATGGTCGCCAAACACG
AAGCCATTCTCGCCGTGCTTCACCAGCTCATCCAGGCACTTGAAATCGTA
GGCGCAGACAGGCAGCCCGCTGCCGAACATGTCGACCACCTTCATGGGCA
GGTCGAGCCCACTGGTGCTCCAGTGCAGACACACGCCCAGGTCGGCGCTG
GCCAGAACAGTGGGGTAGTCCTCGATCTCTAGCCAGGGCGTGATCACCGA
CACCTTCTGCCATTGCAGCTTCTCGATCTCCGCCACATAGTGCTCCTTTT
GTGGCCCCTTTCCGGTGATGATACACAGCAGGGAAGGATAAACCAACGGC
TCTGCTTGCGCAGTCTCCTCGTAAGCTTGCAAAGCCTTAAGCAGTATACC
GAAGTCCTCGTCCGGCGTCCAACTGGTGCTGGAAACCAGCACGGCTTGTC
GCTGTGGTCTGTACTGCACAACACCGCTGGCCAGCTTTTGGGTAAGAGCG
GTGGCCTCCAGAACATCGGATTGTTCGGCGTCCTTGGCCTGAAACTGTGG
GTAGTCTTTGGCCAGCTTCAGGTACAGCTCGTGCTTGTGAGTCAAGTCGA
TGGGATGGAATTGCGCGGGCGCACGATCATACAGAACTTTGACAGGCCCA
ATGCCCCAGTTTTGCTGCAGATCCTCTTGCATGGCCCGCGTCACACAGAA
GTGTGTGTGTGCCTTGGAGCCGAAGTATCGCTCCAGTCGCCT
BS05612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 1341 | CG18012-RA | 466..1341 | 892..17 | 4355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RC | 1516 | CG18012-RC | 462..1338 | 892..16 | 4370 | 99.9 | Minus |
CG18012-RA | 1607 | CG18012-RA | 553..1429 | 892..16 | 4370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17809858..17810419 | 237..798 | 2795 | 99.8 | Plus |
3R | 32079331 | 3R | 17809579..17809800 | 16..237 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 17810479..17810574 | 797..892 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:58 has no hits.
BS05612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:34 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 466..1341 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:01 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 466..1341 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:44 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 553..1439 | 4..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:43 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 553..1439 | 4..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:43 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17809569..17809799 | 4..236 | 98 | <- | Plus |
3R | 17809858..17810418 | 237..797 | 99 | <- | Plus |
3R | 17810480..17810574 | 798..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:44 Download gff for
BS05612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635291..13635521 | 4..236 | 98 | <- | Plus |
arm_3R | 13635580..13636140 | 237..797 | 99 | <- | Plus |
arm_3R | 13636202..13636296 | 798..892 | 100 | | Plus |
BS05612.5prime Sequence
863 bp (729 high quality bases) assembled on 2005-11-29
> BS05612.5prime
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTG
BS05612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 1341 | CG18012-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1607 | CG18012-RA | 88..934 | 17..863 | 4235 | 100 | Plus |
CG18012-RC | 1516 | CG18012-RC | 198..843 | 218..863 | 3215 | 99.8 | Plus |
CG18012-RC | 1516 | CG18012-RC | 88..201 | 17..130 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17810479..17811039 | 577..17 | 2805 | 100 | Minus |
3R | 32079331 | 3R | 17810132..17810419 | 863..576 | 1440 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4593..4630 | 306..269 | 109 | 76.3 | Minus |
BS05612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:35 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:02 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:20:30 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 83..934 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:05 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 83..934 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:05 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17810132..17810418 | 577..863 | 100 | <- | Minus |
3R | 17810480..17811044 | 9..576 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:20:30 Download gff for
BS05612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635854..13636140 | 577..863 | 100 | <- | Minus |
arm_3R | 13636202..13636766 | 9..576 | 99 | | Minus |
BS05612.complete Sequence
1373 bp (1373 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635163
> BS05612.complete
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTG
TATCATCACCGGAAAGGGGCCACAAAAGGAGCACTATGTGGCGGAGATCG
AGAAGCTGCAATGGCAGAAGGTGTCGGTGATCACGCCCTGGCTAGAGATC
GAGGACTACCCCACTGTTCTGGCCAGCGCCGACCTGGGCGTGTGTCTGCA
CTGGAGCACCAGTGGGCTCGACCTGCCCATGAAGGTGGTCGACATGTTCG
GCAGCGGGCTGCCTGTCTGCGCCTACGATTTCAAGTGCCTGGATGAGCTG
GTGAAGCACGGCGAGAATGGCTTCGTGTTTGGCGACCATGTTCAGCTGGC
CGAGCAGCTGAGGATTTGGTTCGAAAATTTTCCAAAGAATCCCAGCATCC
TGGAGACAAGAGCTGGTTTTCAGCGCAAAATCCAGGAGTTCCAGGAGCTG
CGATGGCGGGAGAGTTGGCGCCTGATCGCGGCCCCCGTACTGGAGGCATT
TCTATAGAAGCTTTCTAGACCAT
BS05612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1341 | CG18012-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
CG18012-RC | 117 | CG18012-PC | 1..114 | 17..130 | 570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1607 | CG18012-RA | 88..1429 | 17..1358 | 6710 | 100 | Plus |
CG18012-RC | 1516 | CG18012-RC | 198..1338 | 218..1358 | 5690 | 99.9 | Plus |
CG18012-RC | 1516 | CG18012-RC | 88..201 | 17..130 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17809858..17810419 | 1137..576 | 2810 | 100 | Minus |
3R | 32079331 | 3R | 17810479..17811039 | 577..17 | 2805 | 100 | Minus |
3R | 32079331 | 3R | 17809579..17809800 | 1358..1137 | 1110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:10 has no hits.
BS05612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:28 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:23 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 89..1445 | 9..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:48 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 88..1428 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:29 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 89..1445 | 9..1370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:06 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 88..1428 | 17..1357 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:06 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17809580..17809799 | 1138..1357 | 100 | <- | Minus |
3R | 17809858..17810418 | 577..1137 | 100 | <- | Minus |
3R | 17810480..17811039 | 17..576 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:48 Download gff for
BS05612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635302..13635521 | 1138..1357 | 100 | <- | Minus |
arm_3R | 13635580..13636140 | 577..1137 | 100 | <- | Minus |
arm_3R | 13636202..13636761 | 17..576 | 100 | | Minus |
BS05612.pep Sequence
Translation from 16 to 1356
> BS05612.pep
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFL*
BS05612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 446 | CG18012-PA | 1..446 | 1..446 | 2355 | 100 | Plus |
CG18012-PC | 38 | CG18012-PC | 1..38 | 1..38 | 199 | 100 | Plus |