Clone Sequence Records
BS05613.3prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-02
> BS05613.3prime
ATGGTCTAGAAAGCTTTTAATGCTGCGACCATTGGATGGTCTTTAGGTCG
ATGCCCTCTTGGACCATCTCCCACAGCGGCGACATCTCGCGCAGTCGCTC
CACATGCTTGATGCACTTATCGGCGGTGTAGTCCACCTCCTCGACGGTGG
TAAAGCGCCCGATGCCAAAGCGTATGGAGCTGTGGGCAAGATCCTCGTCG
GTGCCGATGGCACGCAGAACATAGGAGGGCTCCAGGGAGGCGGAGGTGCA
GGCGGACCCACTGCTCAGGGCCACGTCCTTAAGAGCCATCAGTAGTGACT
CGCCCTCGACATAGGCAAACGACAAATTCAGGCAACCATTGTATGTGGCT
TTGGCATCACCATTCCTGATGACATGCGGCAAGGCACTTGAAATCCTGTC
CAGCAGGCGATTGGATAGAAAGTCCACCCATTTCTTGTCGTAGTCCATCT
CACGCAAAGAAAGTTCCGCAGCAGCTCCCAATCCCACGGCGAGCGGGGCT
GGAACCGTTCCGCTCCTTAGGCCACGCTCCTGGCCGCCGCCACTTTGGAT
GGGCTCGAGGCGAACCCTCGGCCTTCGTCGGACATACAGGGCGCCTACAC
CCTTTGGGCCGTAGATTTTGTGGCCGGATATAGACATCAGGTCAATGTTC
ATGGCGTTAACGTCCAGCGGGACCTTTCCCACCGCCTGAGCGGCATCCGT
GTGAAAGAATACTCGGCGAGACCGGCACAGTTTACCAATCTCATCGACGG
GTTGCCGTACGCCGATTTCGTTATTCACCGTCATAATGGACACCAGCGAG
GTCTCCGATGTGATGGTT
BS05613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-PA | 1389 | CG12264-RA | 588..1389 | 818..17 | 3985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-RA | 1533 | CG12264-RA | 659..1460 | 818..17 | 3995 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12000370..12001171 | 818..17 | 3995 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:13:33 has no hits.
BS05613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:36 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-PA | 588..1389 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:04 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-PA | 588..1389 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:44 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 659..1460 | 17..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:13 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 659..1460 | 17..818 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:13 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12000370..12001171 | 17..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:44 Download gff for
BS05613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12000370..12001171 | 17..818 | 99 | | Minus |
BS05613.5prime Sequence
797 bp (741 high quality bases) assembled on 2005-12-02
> BS05613.5prime
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGTAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGAAAGGT
CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCG
BS05613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-PA | 1389 | CG12264-RA | 1..781 | 17..797 | 3880 | 99.8 | Plus |
CG31864-PA | 372 | CG31864-RA | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-RA | 1533 | CG12264-RA | 72..852 | 17..797 | 3890 | 99.9 | Plus |
Qtzl-RC | 926 | CG31864-RC | 75..351 | 17..293 | 1385 | 100 | Plus |
Qtzl-RA | 672 | CG31864-RA | 75..351 | 17..293 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11999911..12000563 | 145..797 | 3250 | 99.8 | Plus |
2L | 23513712 | 2L | 11996000..11996148 | 145..293 | 745 | 100 | Plus |
2L | 23513712 | 2L | 11995814..11995943 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 11999725..11999854 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:44:57 has no hits.
BS05613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:37 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:05 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:09 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 65..852 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:15 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 65..852 | 9..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:15 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11999718..11999854 | 9..146 | 97 | -> | Plus |
2L | 11999913..12000563 | 147..797 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:09 Download gff for
BS05613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11999718..11999854 | 9..146 | 97 | -> | Plus |
arm_2L | 11999913..12000563 | 147..797 | 99 | | Plus |
BS05613.complete Sequence
1421 bp assembled on 2007-10-17
GenBank Submission: FJ635164
> BS05613.complete
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGTAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGAAAGGT
CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCGGCC
ACAAAATCTACGGCCCAAAGGGTGTAGGCGCCCTGTATGTCCGACGAAGG
CCGAGGGTTCGCCTCGAGCCCATCCAAAGTGGCGGCGGCCAGGAGCGTGG
CCTAAGGAGCGGAACGGTTCCAGCCCCGCTCGCCGTGGGATTGGGAGCTG
CTGCGGAACTTTCTTTGCGTGAGATGGACTACGACAAGAAATGGGTGGAC
TTTCTATCCAATCGCCTGCTGGACAGGATTTCAAGTGCCTTGCCGCATGT
CATCAGGAATGGTGATGCCAAAGCCACATACAATGGTTGCCTGAATTTGT
CGTTTGCCTATGTCGAGGGCGAGTCACTACTGATGGCTCTTAAGGACGTG
GCCCTGAGCAGTGGGTCCGCCTGCACCTCCGCCTCCCTGGAGCCCTCCTA
TGTTCTGCGTGCCATCGGCACCGACGAGGATCTTGCCCACAGCTCCATAC
GCTTTGGCATCGGGCGCTTTACCACCGTCGAGGAGGTGGACTACACCGCC
GATAAGTGCATCAAGCATGTGGAGCGACTGCGCGAGATGTCGCCGCTGTG
GGAGATGGTCCAAGAGGGCATCGACCTAAAGACCATCCAATGGTCGCAGC
ATTAAAAGCTTTCTAGACCAT
BS05613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-RA | 1389 | CG12264-PA | 1..1389 | 17..1405 | 6930 | 99.9 | Plus |
Qtzl-RC | 372 | CG31864-PC | 1..277 | 17..293 | 1385 | 100 | Plus |
Qtzl-RA | 372 | CG31864-PA | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-RA | 1533 | CG12264-RA | 72..1460 | 17..1405 | 6930 | 99.9 | Plus |
Qtzl-RC | 926 | CG31864-RC | 75..351 | 17..293 | 1385 | 100 | Plus |
Qtzl-RA | 672 | CG31864-RA | 75..351 | 17..293 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11999911..12001171 | 145..1405 | 6290 | 99.9 | Plus |
2L | 23513712 | 2L | 11996000..11996148 | 145..293 | 745 | 100 | Plus |
2L | 23513712 | 2L | 11995814..11995943 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 11999725..11999854 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:31:14 has no hits.
BS05613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:56 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 1..1389 | 17..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:42 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 72..1458 | 17..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:29 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 72..1458 | 17..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:56 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 65..1460 | 9..1405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:02 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12264-RA | 72..1458 | 17..1403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:02 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11999725..11999854 | 17..146 | 100 | -> | Plus |
2L | 11999913..12001169 | 147..1403 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:29 Download gff for
BS05613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11999725..11999854 | 17..146 | 100 | -> | Plus |
arm_2L | 11999913..12001169 | 147..1403 | 99 | | Plus |
BS05613.pep Sequence
Translation from 16 to 1404
> BS05613.pep
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAY
GWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK
KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITS
ETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVN
AMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGT
VPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGD
AKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAI
GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE
GIDLKTIQWSQH*
BS05613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12264-PA | 462 | CG12264-PA | 1..462 | 1..462 | 2357 | 100 | Plus |
Qtzl-PC | 123 | CG31864-PC | 1..92 | 1..92 | 462 | 100 | Plus |
Qtzl-PA | 123 | CG31864-PA | 1..92 | 1..92 | 462 | 100 | Plus |