Clone BS05613 Report

Search the DGRC for BS05613

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG12264-RA
Protein status:BS05613.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05613.3prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-02

> BS05613.3prime
ATGGTCTAGAAAGCTTTTAATGCTGCGACCATTGGATGGTCTTTAGGTCG
ATGCCCTCTTGGACCATCTCCCACAGCGGCGACATCTCGCGCAGTCGCTC
CACATGCTTGATGCACTTATCGGCGGTGTAGTCCACCTCCTCGACGGTGG
TAAAGCGCCCGATGCCAAAGCGTATGGAGCTGTGGGCAAGATCCTCGTCG
GTGCCGATGGCACGCAGAACATAGGAGGGCTCCAGGGAGGCGGAGGTGCA
GGCGGACCCACTGCTCAGGGCCACGTCCTTAAGAGCCATCAGTAGTGACT
CGCCCTCGACATAGGCAAACGACAAATTCAGGCAACCATTGTATGTGGCT
TTGGCATCACCATTCCTGATGACATGCGGCAAGGCACTTGAAATCCTGTC
CAGCAGGCGATTGGATAGAAAGTCCACCCATTTCTTGTCGTAGTCCATCT
CACGCAAAGAAAGTTCCGCAGCAGCTCCCAATCCCACGGCGAGCGGGGCT
GGAACCGTTCCGCTCCTTAGGCCACGCTCCTGGCCGCCGCCACTTTGGAT
GGGCTCGAGGCGAACCCTCGGCCTTCGTCGGACATACAGGGCGCCTACAC
CCTTTGGGCCGTAGATTTTGTGGCCGGATATAGACATCAGGTCAATGTTC
ATGGCGTTAACGTCCAGCGGGACCTTTCCCACCGCCTGAGCGGCATCCGT
GTGAAAGAATACTCGGCGAGACCGGCACAGTTTACCAATCTCATCGACGG
GTTGCCGTACGCCGATTTCGTTATTCACCGTCATAATGGACACCAGCGAG
GTCTCCGATGTGATGGTT

BS05613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-PA 1389 CG12264-RA 588..1389 818..17 3985 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-RA 1533 CG12264-RA 659..1460 818..17 3995 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12000370..12001171 818..17 3995 99.9 Minus
Blast to na_te.dros performed on 2015-01-31 17:13:33 has no hits.

BS05613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:36 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-PA 588..1389 17..818 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:04 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-PA 588..1389 17..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:31:44 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 659..1460 17..818 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:48:13 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 659..1460 17..818 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:48:13 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12000370..12001171 17..818 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:31:44 Download gff for BS05613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12000370..12001171 17..818 99   Minus

BS05613.5prime Sequence

797 bp (741 high quality bases) assembled on 2005-12-02

> BS05613.5prime
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGTAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGAAAGGT
CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCG

BS05613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-PA 1389 CG12264-RA 1..781 17..797 3880 99.8 Plus
CG31864-PA 372 CG31864-RA 1..277 17..293 1385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-RA 1533 CG12264-RA 72..852 17..797 3890 99.9 Plus
Qtzl-RC 926 CG31864-RC 75..351 17..293 1385 100 Plus
Qtzl-RA 672 CG31864-RA 75..351 17..293 1385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11999911..12000563 145..797 3250 99.8 Plus
2L 23513712 2L 11996000..11996148 145..293 745 100 Plus
2L 23513712 2L 11995814..11995943 17..146 650 100 Plus
2L 23513712 2L 11999725..11999854 17..146 650 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:44:57 has no hits.

BS05613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:37 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-PA 1..781 17..797 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:05 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-PA 1..781 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:21:09 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 65..852 9..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:39:15 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 65..852 9..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:39:15 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11999718..11999854 9..146 97 -> Plus
2L 11999913..12000563 147..797 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:21:09 Download gff for BS05613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11999718..11999854 9..146 97 -> Plus
arm_2L 11999913..12000563 147..797 99   Plus

BS05613.complete Sequence

1421 bp assembled on 2007-10-17

GenBank Submission: FJ635164

> BS05613.complete
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGTAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGAAAGGT
CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCGGCC
ACAAAATCTACGGCCCAAAGGGTGTAGGCGCCCTGTATGTCCGACGAAGG
CCGAGGGTTCGCCTCGAGCCCATCCAAAGTGGCGGCGGCCAGGAGCGTGG
CCTAAGGAGCGGAACGGTTCCAGCCCCGCTCGCCGTGGGATTGGGAGCTG
CTGCGGAACTTTCTTTGCGTGAGATGGACTACGACAAGAAATGGGTGGAC
TTTCTATCCAATCGCCTGCTGGACAGGATTTCAAGTGCCTTGCCGCATGT
CATCAGGAATGGTGATGCCAAAGCCACATACAATGGTTGCCTGAATTTGT
CGTTTGCCTATGTCGAGGGCGAGTCACTACTGATGGCTCTTAAGGACGTG
GCCCTGAGCAGTGGGTCCGCCTGCACCTCCGCCTCCCTGGAGCCCTCCTA
TGTTCTGCGTGCCATCGGCACCGACGAGGATCTTGCCCACAGCTCCATAC
GCTTTGGCATCGGGCGCTTTACCACCGTCGAGGAGGTGGACTACACCGCC
GATAAGTGCATCAAGCATGTGGAGCGACTGCGCGAGATGTCGCCGCTGTG
GGAGATGGTCCAAGAGGGCATCGACCTAAAGACCATCCAATGGTCGCAGC
ATTAAAAGCTTTCTAGACCAT

BS05613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-RA 1389 CG12264-PA 1..1389 17..1405 6930 99.9 Plus
Qtzl-RC 372 CG31864-PC 1..277 17..293 1385 100 Plus
Qtzl-RA 372 CG31864-PA 1..277 17..293 1385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-RA 1533 CG12264-RA 72..1460 17..1405 6930 99.9 Plus
Qtzl-RC 926 CG31864-RC 75..351 17..293 1385 100 Plus
Qtzl-RA 672 CG31864-RA 75..351 17..293 1385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11999911..12001171 145..1405 6290 99.9 Plus
2L 23513712 2L 11996000..11996148 145..293 745 100 Plus
2L 23513712 2L 11995814..11995943 17..146 650 100 Plus
2L 23513712 2L 11999725..11999854 17..146 650 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:31:14 has no hits.

BS05613.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:56 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 17..1405 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:42 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 72..1458 17..1403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:29 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 72..1458 17..1403 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:56 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 65..1460 9..1405 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:02 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 72..1458 17..1403 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:02 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11999725..11999854 17..146 100 -> Plus
2L 11999913..12001169 147..1403 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:29 Download gff for BS05613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11999725..11999854 17..146 100 -> Plus
arm_2L 11999913..12001169 147..1403 99   Plus

BS05613.pep Sequence

Translation from 16 to 1404

> BS05613.pep
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAY
GWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK
KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITS
ETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVN
AMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGT
VPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGD
AKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAI
GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE
GIDLKTIQWSQH*

BS05613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-PA 462 CG12264-PA 1..462 1..462 2357 100 Plus
Qtzl-PC 123 CG31864-PC 1..92 1..92 462 100 Plus
Qtzl-PA 123 CG31864-PA 1..92 1..92 462 100 Plus