Clone BS05615 Report

Search the DGRC for BS05615

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG9393-RA
Protein status:BS05615.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05615.3prime Sequence

884 bp (826 high quality bases) assembled on 2005-12-02

> BS05615.3prime
ATGGTCTAGAAAGCTTTTAGTCTAGGCCCTCCTCCATCTCGTCATCCTCG
TAATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTA
AATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGC
CGGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAG
GCCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGA
ACTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGT
TCACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGC
AGTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAA
CTCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGG
AGAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCG
TGCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCAC
GTCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGA
ATGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGA
GGCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACAC
CCAGTTGGCGTAGGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCG
CATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAG
CCCGCGAACTTCTGGTTGCCGATCTGCAGATACGGCAGCTTCCCGGCTCC
CGAACGCAGCGGATTGGAGCTGGTCTGCACGTCC

BS05615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 117..984 884..17 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1479 CG9393-RA 268..1135 884..17 4340 100 Minus
CG9393-RB 1589 CG9393-RB 268..1060 884..92 3965 100 Minus
CG9393-RB 1589 CG9393-RB 1168..1245 94..17 390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562175..9562570 92..487 1980 100 Plus
3R 32079331 3R 9562817..9563097 488..768 1405 100 Plus
3R 32079331 3R 9563189..9563307 766..884 595 100 Plus
3R 32079331 3R 9561927..9562004 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:26:35 has no hits.

BS05615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:40 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 117..984 17..884 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:09 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 117..984 17..884 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:36 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 268..1143 8..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:18 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 268..1143 8..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:18 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9562817..9563095 488..766 100 <- Plus
3R 9563190..9563307 767..884 100   Plus
3R 9561917..9562001 8..91 95 <- Plus
3R 9562175..9562570 92..487 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:36 Download gff for BS05615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387639..5387723 8..91 95 <- Plus
arm_3R 5387897..5388292 92..487 100 <- Plus
arm_3R 5388539..5388817 488..766 100 <- Plus
arm_3R 5388912..5389029 767..884 100   Plus

BS05615.5prime Sequence

846 bp (817 high quality bases) assembled on 2005-11-29

> BS05615.5prime
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCT

BS05615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RB 1589 CG9393-RB 152..981 17..846 4150 100 Plus
CG9393-RA 1479 CG9393-RA 152..981 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562254..9562570 846..530 1585 100 Minus
3R 32079331 3R 9562817..9563097 529..249 1405 100 Minus
3R 32079331 3R 9563189..9563337 251..103 745 100 Minus
3R 32079331 3R 9563436..9563522 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:07:49 has no hits.

BS05615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:41 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:10 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:33 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..981 17..846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:18 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..981 17..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:18 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9562254..9562570 530..846 100 <- Minus
3R 9562817..9563095 251..529 100 <- Minus
3R 9563190..9563336 104..250 100 <- Minus
3R 9563436..9563522 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:33 Download gff for BS05615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387976..5388292 530..846 100 <- Minus
arm_3R 5388539..5388817 251..529 100 <- Minus
arm_3R 5388912..5389058 104..250 100 <- Minus
arm_3R 5389158..5389244 17..103 100   Minus

BS05615.complete Sequence

1016 bp (1016 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635165

> BS05615.complete
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAAC
ACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGCCATGGGAGCGTTTGC
GGCATGGCGTGGGATTTACAACCAGCTAACGACACGCTCTTCGACGGACT
ACGATGGCATAGATTACGAGGATGACGAGATGGAGGAGGGCCTAGACTAA
AAGCTTTCTAGACCAT

BS05615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 984 CG9393-PA 1..984 17..1000 4920 100 Plus
CG9393-RB 951 CG9393-PB 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1479 CG9393-RA 152..1135 17..1000 4920 100 Plus
CG9393-RB 1589 CG9393-RB 152..1060 17..925 4545 100 Plus
CG9393-RB 1589 CG9393-RB 1168..1245 923..1000 390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562175..9562570 925..530 1980 100 Minus
3R 32079331 3R 9562817..9563097 529..249 1405 100 Minus
3R 32079331 3R 9563189..9563337 251..103 745 100 Minus
3R 32079331 3R 9563436..9563522 103..17 435 100 Minus
3R 32079331 3R 9561927..9562004 1000..923 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:24:16 has no hits.

BS05615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:31 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 17..1000 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:27 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 149..1140 17..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:31 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..1133 17..998 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:31 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 149..1140 17..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:51 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..1133 17..998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:51 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9562817..9563095 251..529 100 <- Minus
3R 9563190..9563336 104..250 100 <- Minus
3R 9563436..9563522 17..103 100   Minus
3R 9561929..9562001 926..998 100 <- Minus
3R 9562175..9562570 530..925 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:31 Download gff for BS05615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5388539..5388817 251..529 100 <- Minus
arm_3R 5388912..5389058 104..250 100 <- Minus
arm_3R 5389158..5389244 17..103 100   Minus
arm_3R 5387651..5387723 926..998 100 <- Minus
arm_3R 5387897..5388292 530..925 100 <- Minus

BS05615.pep Sequence

Translation from 16 to 999

> BS05615.pep
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLD*

BS05615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 327 CG9393-PA 1..327 1..327 1731 100 Plus
CG9393-PB 316 CG9393-PB 1..303 1..303 1604 100 Plus