Clone Sequence Records
BS05615.3prime Sequence
884 bp (826 high quality bases) assembled on 2005-12-02
> BS05615.3prime
ATGGTCTAGAAAGCTTTTAGTCTAGGCCCTCCTCCATCTCGTCATCCTCG
TAATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTA
AATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGC
CGGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAG
GCCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGA
ACTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGT
TCACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGC
AGTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAA
CTCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGG
AGAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCG
TGCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCAC
GTCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGA
ATGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGA
GGCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACAC
CCAGTTGGCGTAGGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCG
CATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAG
CCCGCGAACTTCTGGTTGCCGATCTGCAGATACGGCAGCTTCCCGGCTCC
CGAACGCAGCGGATTGGAGCTGGTCTGCACGTCC
BS05615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 117..984 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 1479 | CG9393-RA | 268..1135 | 884..17 | 4340 | 100 | Minus |
CG9393-RB | 1589 | CG9393-RB | 268..1060 | 884..92 | 3965 | 100 | Minus |
CG9393-RB | 1589 | CG9393-RB | 1168..1245 | 94..17 | 390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562175..9562570 | 92..487 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 9562817..9563097 | 488..768 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 9563189..9563307 | 766..884 | 595 | 100 | Plus |
3R | 32079331 | 3R | 9561927..9562004 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:26:35 has no hits.
BS05615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:40 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 117..984 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:09 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 117..984 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:52:36 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 268..1143 | 8..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:18 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 268..1143 | 8..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:18 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562817..9563095 | 488..766 | 100 | <- | Plus |
3R | 9563190..9563307 | 767..884 | 100 | | Plus |
3R | 9561917..9562001 | 8..91 | 95 | <- | Plus |
3R | 9562175..9562570 | 92..487 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:52:36 Download gff for
BS05615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387639..5387723 | 8..91 | 95 | <- | Plus |
arm_3R | 5387897..5388292 | 92..487 | 100 | <- | Plus |
arm_3R | 5388539..5388817 | 488..766 | 100 | <- | Plus |
arm_3R | 5388912..5389029 | 767..884 | 100 | | Plus |
BS05615.5prime Sequence
846 bp (817 high quality bases) assembled on 2005-11-29
> BS05615.5prime
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCT
BS05615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RB | 1589 | CG9393-RB | 152..981 | 17..846 | 4150 | 100 | Plus |
CG9393-RA | 1479 | CG9393-RA | 152..981 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562254..9562570 | 846..530 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 529..249 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 251..103 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563522 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:07:49 has no hits.
BS05615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:41 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:10 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:33 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..981 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:38:18 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..981 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:38:18 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562254..9562570 | 530..846 | 100 | <- | Minus |
3R | 9562817..9563095 | 251..529 | 100 | <- | Minus |
3R | 9563190..9563336 | 104..250 | 100 | <- | Minus |
3R | 9563436..9563522 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:33 Download gff for
BS05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387976..5388292 | 530..846 | 100 | <- | Minus |
arm_3R | 5388539..5388817 | 251..529 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 104..250 | 100 | <- | Minus |
arm_3R | 5389158..5389244 | 17..103 | 100 | | Minus |
BS05615.complete Sequence
1016 bp (1016 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635165
> BS05615.complete
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAAC
ACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGCCATGGGAGCGTTTGC
GGCATGGCGTGGGATTTACAACCAGCTAACGACACGCTCTTCGACGGACT
ACGATGGCATAGATTACGAGGATGACGAGATGGAGGAGGGCCTAGACTAA
AAGCTTTCTAGACCAT
BS05615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 984 | CG9393-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
CG9393-RB | 951 | CG9393-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 1479 | CG9393-RA | 152..1135 | 17..1000 | 4920 | 100 | Plus |
CG9393-RB | 1589 | CG9393-RB | 152..1060 | 17..925 | 4545 | 100 | Plus |
CG9393-RB | 1589 | CG9393-RB | 1168..1245 | 923..1000 | 390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562175..9562570 | 925..530 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 529..249 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 251..103 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563522 | 103..17 | 435 | 100 | Minus |
3R | 32079331 | 3R | 9561927..9562004 | 1000..923 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:16 has no hits.
BS05615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:31 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 1..984 | 17..1000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:27 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 149..1140 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:31 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..1133 | 17..998 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:31 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 149..1140 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:51 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..1133 | 17..998 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:51 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562817..9563095 | 251..529 | 100 | <- | Minus |
3R | 9563190..9563336 | 104..250 | 100 | <- | Minus |
3R | 9563436..9563522 | 17..103 | 100 | | Minus |
3R | 9561929..9562001 | 926..998 | 100 | <- | Minus |
3R | 9562175..9562570 | 530..925 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:31 Download gff for
BS05615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5388539..5388817 | 251..529 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 104..250 | 100 | <- | Minus |
arm_3R | 5389158..5389244 | 17..103 | 100 | | Minus |
arm_3R | 5387651..5387723 | 926..998 | 100 | <- | Minus |
arm_3R | 5387897..5388292 | 530..925 | 100 | <- | Minus |
BS05615.pep Sequence
Translation from 16 to 999
> BS05615.pep
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLD*
BS05615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 327 | CG9393-PA | 1..327 | 1..327 | 1731 | 100 | Plus |
CG9393-PB | 316 | CG9393-PB | 1..303 | 1..303 | 1604 | 100 | Plus |