Clone Sequence Records
BS05616.3prime Sequence
871 bp (869 high quality bases) assembled on 2005-12-02
> BS05616.3prime
ATGGTCTAGAAAGCTTCTAAAACTCTAAACGAGCGAGCAATCCCTGGCAG
CGATCTTCTAATTGGAGGGGACTACACTGGATAGTCGGATCCTCTGTTAG
AGTCCGGGTGATCTTCCATAAGCACTCGAGATCGTATTGCACATGATAAT
CGTTCATTGTGTAACTATCGAATAGTAAAAATTTGGTGGCTACGGTTCCC
TCTGCCAATCGGCGAGCGGCTATAAACTCCAGTAGTTCTATAAAATCGAG
GTAGTTGATACCAAAGCTGGCCCTCAGCATTGTCTGGCAGTGGGCCTCAA
AGTTGTCCATCTGCTGGCAGTCGGAGATCTCATTGCAAACGGCCTTCAGG
TTGTTCTTAAGGTTTTGCCAGACCATGGATATGTTGCAGCCATTGAACCA
GTTGTGATTGACGGATATGGTGTCTGTTAGGTTCCACACCTGATGAAACC
AGCCACTGGGCACGAAAACAGCTTCATTGGCCCGCTGATTAATGGTGTAA
TATCGCACGTTGTGCTCATCCAGCATTTTCTCGTCTATACTAAAGGGCAG
GTTTCCCAAGCGATCGTTGAGTTTGAGTTCTTCTCCCGGCGGCATTATCA
GCCATTTCTTAAGGCCCACTATATTGGTGGACCAACTGAAGGAGCCAAAC
ACGTCCGCATGATAGGAGGTCCATGAGTTCTTGGGCCCCATATAGACGAA
TCGATAGTCGTCTTTCCCCTGCTGAATCAGTTGTTCGTTGAGCCAGTCGG
AGGCAAAGTATTTAGGCACCTTGTAGAAGTTATAGCCCGGCATTTGGGCA
GCCAGATGCCAGTCCTTGAGGTAGAGATTGTCCCCGCTCGCGGGAGCCAC
ATTACTATTCACTTCCGCCGA
BS05616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PA | 1278 | CG7200-RA | 424..1278 | 871..17 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 1088..1944 | 871..15 | 4285 | 100 | Minus |
| CG7200-RA | 1517 | CG7200-RA | 564..1420 | 871..15 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157207..18157864 | 15..672 | 3290 | 100 | Plus |
| 2L | 23513712 | 2L | 18157917..18158117 | 671..871 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:02:52 has no hits.
BS05616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:42 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 425..1278 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:13 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 425..1278 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:21:29 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 565..1420 | 15..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:12 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 565..1420 | 15..870 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:12 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157207..18157863 | 15..671 | 100 | <- | Plus |
| 2L | 18157918..18158116 | 672..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:21:29 Download gff for
BS05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157207..18157863 | 15..671 | 100 | <- | Plus |
| arm_2L | 18157918..18158116 | 672..870 | 100 | | Plus |
BS05616.5prime Sequence
847 bp (700 high quality bases) assembled on 2005-11-29
> BS05616.5prime
GAAGTTATCAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGC
TCCAGTTGCATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAG
GAAATCGAGCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTA
CATGCACAAGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGG
AGTGCCAGAACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTC
AACTCCAATCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAA
GATCAGCGATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCA
ATAGTCACACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGG
AGGAGTAGCATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGT
GAATAGTAATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACT
GGCATCTGGCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAA
TACTTTGCCTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGA
CGACTATCGATTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATC
ATGCGGACGTGTTTGGCTCCTTCAGTTGGTCCACCAATATAGTGGGCCTT
AAGAAATGGCTGATAATGCCGCCGGGAGAAGAACTCAAACTCAACGATCG
CTTGGGAAACCTGCCCTTTAGTATAGACGAGAAAATGCTGGATGAGCACA
ACGTGCGATATTACACCATTAATCAGCGGGCCAATGAAGCTGTTTTC
BS05616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PA | 1278 | CG7200-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 665..1495 | 17..847 | 4155 | 100 | Plus |
| CG7200-RA | 1517 | CG7200-RA | 141..971 | 17..847 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157917..18158540 | 640..17 | 3120 | 100 | Minus |
| 2L | 23513712 | 2L | 18157656..18157864 | 847..639 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:23:46 has no hits.
BS05616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:43 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:14 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 1..831 | 17..847 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:10:44 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 133..971 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:33 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 133..971 | 9..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:33 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157656..18157863 | 640..847 | 100 | <- | Minus |
| 2L | 18157918..18158548 | 9..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:10:44 Download gff for
BS05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157656..18157863 | 640..847 | 100 | <- | Minus |
| arm_2L | 18157918..18158548 | 9..639 | 99 | | Minus |
BS05616.complete Sequence
1310 bp (1310 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635166
> BS05616.complete
GAAGTTATCAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGC
TCCAGTTGCATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAG
GAAATCGAGCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTA
CATGCACAAGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGG
AGTGCCAGAACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTC
AACTCCAATCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAA
GATCAGCGATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCA
ATAGTCACACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGG
AGGAGTAGCATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGT
GAATAGTAATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACT
GGCATCTGGCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAA
TACTTTGCCTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGA
CGACTATCGATTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATC
ATGCGGACGTGTTTGGCTCCTTCAGTTGGTCCACCAATATAGTGGGCCTT
AAGAAATGGCTGATAATGCCGCCGGGAGAAGAACTCAAACTCAACGATCG
CTTGGGAAACCTGCCCTTTAGTATAGACGAGAAAATGCTGGATGAGCACA
ACGTGCGATATTACACCATTAATCAGCGGGCCAATGAAGCTGTTTTCGTG
CCCAGTGGCTGGTTTCATCAGGTGTGGAACCTAACAGACACCATATCCGT
CAATCACAACTGGTTCAATGGCTGCAACATATCCATGGTCTGGCAAAACC
TTAAGAACAACCTGAAGGCCGTTTGCAATGAGATCTCCGACTGCCAGCAG
ATGGACAACTTTGAGGCCCACTGCCAGACAATGCTGAGGGCCAGCTTTGG
TATCAACTACCTCGATTTTATAGAACTACTGGAGTTTATAGCCGCTCGCC
GATTGGCAGAGGGAACCGTAGCCACCAAATTTTTACTATTCGATAGTTAC
ACAATGAACGATTATCATGTGCAATACGATCTCGAGTGCTTATGGAAGAT
CACCCGGACTCTAACAGAGGATCCGACTATCCAGTGTAGTCCCCTCCAAT
TAGAAGATCGCTGCCAGGGATTGCTCGCTCGTTTAGAGTTTTAGAAGCTT
TCTAGACCAT
BS05616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 1278 | CG7200-PB | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| CG7200-RA | 1278 | CG7200-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 665..1944 | 17..1296 | 6400 | 100 | Plus |
| CG7200-RA | 1517 | CG7200-RA | 141..1420 | 17..1296 | 6400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157207..18157864 | 1296..639 | 3290 | 100 | Minus |
| 2L | 23513712 | 2L | 18157917..18158540 | 640..17 | 3120 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:53:46 has no hits.
BS05616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:32 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:28 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 129..1416 | 9..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:56 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 141..1418 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:33 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 129..1416 | 9..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:28 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 141..1418 | 17..1294 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:28 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157209..18157863 | 640..1294 | 100 | <- | Minus |
| 2L | 18157918..18158540 | 17..639 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:56 Download gff for
BS05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157209..18157863 | 640..1294 | 100 | <- | Minus |
| arm_2L | 18157918..18158540 | 17..639 | 100 | | Minus |
BS05616.pep Sequence
Translation from 16 to 1293
> BS05616.pep
MASEERDGDVLLQLHPEEVVETDPQLPEEIERCSGLDYNDFFWRYMHKNI
PVIIANVSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGP
VPVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVA
PASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQGKDDYRFV
YMGPKNSWTSYHADVFGSFSWSTNIVGLKKWLIMPPGEELKLNDRLGNLP
FSIDEKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWF
NGCNISMVWQNLKNNLKAVCNEISDCQQMDNFEAHCQTMLRASFGINYLD
FIELLEFIAARRLAEGTVATKFLLFDSYTMNDYHVQYDLECLWKITRTLT
EDPTIQCSPLQLEDRCQGLLARLEF*
BS05616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PB | 425 | CG7200-PB | 1..425 | 1..425 | 2319 | 100 | Plus |
| CG7200-PA | 425 | CG7200-PA | 1..425 | 1..425 | 2319 | 100 | Plus |
| PSR-PA | 408 | CG5383-PA | 155..303 | 174..309 | 204 | 34.4 | Plus |
| PSR-PB | 441 | CG5383-PB | 155..303 | 174..309 | 204 | 34.4 | Plus |
