Clone Sequence Records
BS05617.3prime Sequence
877 bp (779 high quality bases) assembled on 2005-12-02
> BS05617.3prime
ATGGTCTAGAAAGCTTTCAAAGAACCAACGATTTCGGAAACAATTGCTGC
TTCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGG
ATGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGA
GGTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTG
TTGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTT
GTCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCG
ACATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAA
AGATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTA
GATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGC
ACACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGC
AGCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCG
CGGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGA
CGACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTG
AGCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTT
TAACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGT
ATCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGC
TTCAGGATACCCTCCTTGTATACGGCATCATCCTGGTTGGCACGCGTCTC
GGCCGCACAATTGATGACAATGTCCCA
BS05617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 256..1116 | 877..17 | 4305 | 100 | Minus |
CG5854-PB | 990 | CG5854-RB | 130..990 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 371..1231 | 877..17 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934611..23934932 | 877..556 | 1610 | 100 | Minus |
3R | 32079331 | 3R | 23935364..23935633 | 286..17 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 23935029..23935297 | 555..287 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:00:56 has no hits.
BS05617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:44 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 257..1116 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:16 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PB | 131..990 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:55 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 372..1231 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:54 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 372..1231 | 17..876 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:54 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935029..23935297 | 287..555 | 100 | -> | Minus |
3R | 23935364..23935633 | 17..286 | 100 | | Minus |
3R | 23934612..23934932 | 556..876 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:55 Download gff for
BS05617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19760334..19760654 | 556..876 | 100 | -> | Minus |
arm_3R | 19760751..19761019 | 287..555 | 100 | -> | Minus |
arm_3R | 19761086..19761355 | 17..286 | 100 | | Minus |
BS05617.5prime Sequence
885 bp (777 high quality bases) assembled on 2005-11-29
> BS05617.5prime
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTTGTATGTCG
AATTTGGCAAAACTTATCCCACGGACACCGTCAGT
BS05617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
CG5854-PB | 990 | CG5854-RB | 1..699 | 143..841 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 115..985 | 16..885 | 4285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 224..593 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935297 | 594..862 | 1300 | 98.9 | Plus |
3R | 32079331 | 3R | 23934170..23934344 | 50..224 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:38:15 has no hits.
BS05617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:45 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:17 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:30 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 115..985 | 16..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:47 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 115..985 | 16..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:47 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23934026..23934060 | 16..50 | 100 | -> | Plus |
3R | 23934171..23934344 | 51..224 | 100 | -> | Plus |
3R | 23934564..23934932 | 225..593 | 100 | -> | Plus |
3R | 23935029..23935297 | 594..862 | 99 | -> | Plus |
3R | 23935364..23935387 | 863..885 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:30 Download gff for
BS05617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759748..19759782 | 16..50 | 100 | -> | Plus |
arm_3R | 19759893..19760066 | 51..224 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 225..593 | 100 | -> | Plus |
arm_3R | 19760751..19761019 | 594..862 | 99 | -> | Plus |
arm_3R | 19761086..19761109 | 863..885 | 95 | | Plus |
BS05617.complete Sequence
1148 bp (1148 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635167
> BS05617.complete
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGTCG
AATTTGGCAAAACTTTATCCCACGGACACCGTCAGTGAAATCAACGACAA
GCACATGGCACCCTGGGCCGAGATTTGCCAGCGCAATGGCATCGACAACA
CCCCGCTGACACCGTACCTAGATGAGGAGCAGCTCCAGCACAAGCACCTC
TACTTGGATAACACGAAACTGAAAGACTTTGGCTACGTGCTGCAGCATCC
GAAAGTCACTCGCGAGCTGCTCATGGAGATGATTAACGACTATGTGAAGC
AGCAATTGTTTCCGAAATCGTTGGTTCTTTGAAAGCTTTCTAGACCAT
BS05617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1116 | CG5854-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 115..1231 | 16..1132 | 5585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 224..593 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935364..23935633 | 863..1132 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935297 | 594..862 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 23934170..23934344 | 50..224 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:23:22 has no hits.
BS05617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:18 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 1..1116 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:11 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 112..1228 | 16..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:57 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 116..1230 | 17..1131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:19 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 112..1228 | 16..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:26 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 116..1230 | 17..1131 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:26 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935364..23935632 | 863..1131 | 100 | | Plus |
3R | 23934027..23934060 | 17..50 | 100 | -> | Plus |
3R | 23934171..23934344 | 51..224 | 100 | -> | Plus |
3R | 23934564..23934932 | 225..593 | 100 | -> | Plus |
3R | 23935029..23935297 | 594..862 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:57 Download gff for
BS05617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759749..19759782 | 17..50 | 100 | -> | Plus |
arm_3R | 19759893..19760066 | 51..224 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 225..593 | 100 | -> | Plus |
arm_3R | 19760751..19761019 | 594..862 | 100 | -> | Plus |
arm_3R | 19761086..19761354 | 863..1131 | 100 | | Plus |
BS05617.pep Sequence
Translation from 16 to 1131
> BS05617.pep
MSEKPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQ
TRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINCAAETRANQ
DDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKTPLKEDCKT
DPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYLMPRIIIAA
IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDD
SASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEINDKHMAPW
AEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVLQHPKVTRE
LLMEMINDYVKQQLFPKSLVL*
BS05617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 371 | CG5854-PA | 1..371 | 1..371 | 1944 | 100 | Plus |