Clone BS05617 Report

Search the DGRC for BS05617

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5854-RA
Protein status:BS05617.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05617.3prime Sequence

877 bp (779 high quality bases) assembled on 2005-12-02

> BS05617.3prime
ATGGTCTAGAAAGCTTTCAAAGAACCAACGATTTCGGAAACAATTGCTGC
TTCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGG
ATGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGA
GGTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTG
TTGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTT
GTCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCG
ACATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAA
AGATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTA
GATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGC
ACACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGC
AGCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCG
CGGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGA
CGACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTG
AGCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTT
TAACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGT
ATCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGC
TTCAGGATACCCTCCTTGTATACGGCATCATCCTGGTTGGCACGCGTCTC
GGCCGCACAATTGATGACAATGTCCCA

BS05617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 256..1116 877..17 4305 100 Minus
CG5854-PB 990 CG5854-RB 130..990 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 371..1231 877..17 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934611..23934932 877..556 1610 100 Minus
3R 32079331 3R 23935364..23935633 286..17 1350 100 Minus
3R 32079331 3R 23935029..23935297 555..287 1345 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:00:56 has no hits.

BS05617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:44 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 257..1116 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:16 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PB 131..990 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:10:55 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 372..1231 17..876 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:54 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 372..1231 17..876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:54 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23935029..23935297 287..555 100 -> Minus
3R 23935364..23935633 17..286 100   Minus
3R 23934612..23934932 556..876 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:10:55 Download gff for BS05617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19760334..19760654 556..876 100 -> Minus
arm_3R 19760751..19761019 287..555 100 -> Minus
arm_3R 19761086..19761355 17..286 100   Minus

BS05617.5prime Sequence

885 bp (777 high quality bases) assembled on 2005-11-29

> BS05617.5prime
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTTGTATGTCG
AATTTGGCAAAACTTATCCCACGGACACCGTCAGT

BS05617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 1..825 17..841 4125 100 Plus
CG5854-PB 990 CG5854-RB 1..699 143..841 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 115..985 16..885 4285 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 224..593 1850 100 Plus
3R 32079331 3R 23935029..23935297 594..862 1300 98.9 Plus
3R 32079331 3R 23934170..23934344 50..224 875 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:38:15 has no hits.

BS05617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:45 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:17 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..870 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:30 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 115..985 16..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:47 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 115..985 16..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:47 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23934026..23934060 16..50 100 -> Plus
3R 23934171..23934344 51..224 100 -> Plus
3R 23934564..23934932 225..593 100 -> Plus
3R 23935029..23935297 594..862 99 -> Plus
3R 23935364..23935387 863..885 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:30 Download gff for BS05617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759748..19759782 16..50 100 -> Plus
arm_3R 19759893..19760066 51..224 100 -> Plus
arm_3R 19760286..19760654 225..593 100 -> Plus
arm_3R 19760751..19761019 594..862 99 -> Plus
arm_3R 19761086..19761109 863..885 95   Plus

BS05617.complete Sequence

1148 bp (1148 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635167

> BS05617.complete
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGTCG
AATTTGGCAAAACTTTATCCCACGGACACCGTCAGTGAAATCAACGACAA
GCACATGGCACCCTGGGCCGAGATTTGCCAGCGCAATGGCATCGACAACA
CCCCGCTGACACCGTACCTAGATGAGGAGCAGCTCCAGCACAAGCACCTC
TACTTGGATAACACGAAACTGAAAGACTTTGGCTACGTGCTGCAGCATCC
GAAAGTCACTCGCGAGCTGCTCATGGAGATGATTAACGACTATGTGAAGC
AGCAATTGTTTCCGAAATCGTTGGTTCTTTGAAAGCTTTCTAGACCAT

BS05617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1116 CG5854-PA 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 115..1231 16..1132 5585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 224..593 1850 100 Plus
3R 32079331 3R 23935364..23935633 863..1132 1350 100 Plus
3R 32079331 3R 23935029..23935297 594..862 1345 100 Plus
3R 32079331 3R 23934170..23934344 50..224 875 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:23:22 has no hits.

BS05617.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:18 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 1..1116 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:11 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 112..1228 16..1132 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:57 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 116..1230 17..1131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:19 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 112..1228 16..1132 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:26 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 116..1230 17..1131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:26 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935364..23935632 863..1131 100   Plus
3R 23934027..23934060 17..50 100 -> Plus
3R 23934171..23934344 51..224 100 -> Plus
3R 23934564..23934932 225..593 100 -> Plus
3R 23935029..23935297 594..862 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:57 Download gff for BS05617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759749..19759782 17..50 100 -> Plus
arm_3R 19759893..19760066 51..224 100 -> Plus
arm_3R 19760286..19760654 225..593 100 -> Plus
arm_3R 19760751..19761019 594..862 100 -> Plus
arm_3R 19761086..19761354 863..1131 100   Plus

BS05617.pep Sequence

Translation from 16 to 1131

> BS05617.pep
MSEKPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQ
TRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINCAAETRANQ
DDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKTPLKEDCKT
DPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYLMPRIIIAA
IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDD
SASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEINDKHMAPW
AEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVLQHPKVTRE
LLMEMINDYVKQQLFPKSLVL*

BS05617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 371 CG5854-PA 1..371 1..371 1944 100 Plus