Clone BS05621 Report

Search the DGRC for BS05621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptSet-RA
Protein status:BS05621.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05621.3prime Sequence

840 bp (798 high quality bases) assembled on 2005-12-02

> BS05621.3prime
ATGGTCTAGAAAGCTTTTACTTGTCATCCTCATCCTCTTCCTCTTCCTCG
CCTTCTCCATCCTCACCGTCCTCGTCGTCAAATGCCTCCTCATCATTATC
TTCGTTGTCCTCCTCGTCCTCGGGCTCCACCTCGATATCAGGTACCAGAT
AATACTGCAGTGGATTTGGCCAAAGGTCGTCTTTTATCAGTTCTGCGATC
TCGTCGTTGACGGGATCGGTGTTATCCGAGAACCAATCGAAGAAGGTTTT
GTATTCGGAGTTGCGCTTCTTCTTGTTTCCGTACGGCTTTGTCAGCAAAA
GTTTTAGCAGGTTCTTTCCCTCCTTCCATTTGATGGGCGTGCTGGTAGAC
GCGGGCCAGTCTCCGTTCTCGGAAGCAGCCGCTGAATTCAGGTGGAACTC
TTTGGTGAGCACCTTGTTTTCGAAGTAAGGATTCTCGTCGAAATGGAAGT
TGATGCGGTAACCCGATTTGATGTCCTCAAACTCCTCAACCTCAAGTTTG
TTGAGCGCGTGCAGGCACTCCTCCTCCTCCTCGTCCAGAATGCCGGATAC
TTGCGGGTGGTTGATAAACGAGGTCACCCAAAAGTTGGGGATGCGCTTGA
CCAGCTCGCTGCGCTTCTCGTAGCAGGGCTTCCGCAGCTTGTTGTACTTC
TGCTCCACCTTGAGGATCTCCTCGCTGGCCTTCTCGTTCAGCGCATCGAT
CTCGTTCTGGCAGGCATCAATTTGCTCCAACGCCTCCGACTCCTCCTCGT
TGTTACCGGCGGCGGCGGATGTGTTGCCATCGGCGGGGGCGCCGTCCAGC
TTGGCTCGCTTTGGCACGCTCGACATGTCGACTGATAACT

BS05621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4299-PA 810 Set-RA 1..810 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..946 826..16 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 379..28 1760 100 Minus
3R 32079331 3R 15263687..15263944 826..569 1290 100 Minus
3R 32079331 3R 15264352..15264542 569..379 955 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:04:08 has no hits.

BS05621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:51 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:25 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4299-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:18 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 12..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:31 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 12..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:31 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15263685..15263944 569..829 99 -> Minus
3R 15264353..15264542 379..568 100 -> Minus
3R 15264605..15264955 28..378 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:18 Download gff for BS05621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11089407..11089666 569..829 99 -> Minus
arm_3R 11090075..11090264 379..568 100 -> Minus
arm_3R 11090327..11090677 28..378 100 -> Minus

BS05621.5prime Sequence

840 bp (785 high quality bases) assembled on 2005-12-02

> BS05621.5prime
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGTAAAAGCTTTCTAGACC

BS05621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4299-PA 810 Set-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..946 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 464..815 1760 100 Plus
3R 32079331 3R 15263687..15263944 17..274 1290 100 Plus
3R 32079331 3R 15264352..15264542 274..464 955 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:47:49 has no hits.

BS05621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:52 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:26 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4299-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:44 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 14..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:01 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 14..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:01 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15263685..15263944 14..274 99 -> Plus
3R 15264353..15264542 275..464 100 -> Plus
3R 15264605..15264955 465..815 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:44 Download gff for BS05621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11089407..11089666 14..274 99 -> Plus
arm_3R 11090075..11090264 275..464 100 -> Plus
arm_3R 11090327..11090677 465..815 100 -> Plus

BS05621.complete Sequence

842 bp (842 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635168

> BS05621.complete
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGTAAAAGCTTTCTAGACCAT

BS05621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 810 CG4299-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..946 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 464..815 1760 100 Plus
3R 32079331 3R 15263687..15263944 17..274 1290 100 Plus
3R 32079331 3R 15264352..15264542 274..464 955 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:08:18 has no hits.

BS05621.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:20 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:38 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 151..965 14..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:00 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 136..943 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:20 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 151..965 14..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:18 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 136..943 17..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:18 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15263687..15263944 17..274 100 -> Plus
3R 15264353..15264542 275..464 100 -> Plus
3R 15264605..15264955 465..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:00 Download gff for BS05621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11089409..11089666 17..274 100 -> Plus
arm_3R 11090075..11090264 275..464 100 -> Plus
arm_3R 11090327..11090677 465..815 100   Plus

BS05621.pep Sequence

Translation from 16 to 825

> BS05621.pep
MSSVPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKA
SEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEE
EEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAA
ASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS
DNTDPVNDEIAELIKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFD
DEDGEDGEGEEEEEDEDDK*

BS05621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Set-PA 269 CG4299-PA 1..269 1..269 1438 100 Plus
Nap1-PC 370 CG5330-PC 64..353 42..259 206 24.3 Plus
Nap1-PB 370 CG5330-PB 64..353 42..259 206 24.3 Plus
Nap1-PA 370 CG5330-PA 64..353 42..259 206 24.3 Plus
mil-PA 283 CG5017-PA 28..283 27..269 168 22.7 Plus