Clone Sequence Records
BS05621.3prime Sequence
840 bp (798 high quality bases) assembled on 2005-12-02
> BS05621.3prime
ATGGTCTAGAAAGCTTTTACTTGTCATCCTCATCCTCTTCCTCTTCCTCG
CCTTCTCCATCCTCACCGTCCTCGTCGTCAAATGCCTCCTCATCATTATC
TTCGTTGTCCTCCTCGTCCTCGGGCTCCACCTCGATATCAGGTACCAGAT
AATACTGCAGTGGATTTGGCCAAAGGTCGTCTTTTATCAGTTCTGCGATC
TCGTCGTTGACGGGATCGGTGTTATCCGAGAACCAATCGAAGAAGGTTTT
GTATTCGGAGTTGCGCTTCTTCTTGTTTCCGTACGGCTTTGTCAGCAAAA
GTTTTAGCAGGTTCTTTCCCTCCTTCCATTTGATGGGCGTGCTGGTAGAC
GCGGGCCAGTCTCCGTTCTCGGAAGCAGCCGCTGAATTCAGGTGGAACTC
TTTGGTGAGCACCTTGTTTTCGAAGTAAGGATTCTCGTCGAAATGGAAGT
TGATGCGGTAACCCGATTTGATGTCCTCAAACTCCTCAACCTCAAGTTTG
TTGAGCGCGTGCAGGCACTCCTCCTCCTCCTCGTCCAGAATGCCGGATAC
TTGCGGGTGGTTGATAAACGAGGTCACCCAAAAGTTGGGGATGCGCTTGA
CCAGCTCGCTGCGCTTCTCGTAGCAGGGCTTCCGCAGCTTGTTGTACTTC
TGCTCCACCTTGAGGATCTCCTCGCTGGCCTTCTCGTTCAGCGCATCGAT
CTCGTTCTGGCAGGCATCAATTTGCTCCAACGCCTCCGACTCCTCCTCGT
TGTTACCGGCGGCGGCGGATGTGTTGCCATCGGCGGGGGCGCCGTCCAGC
TTGGCTCGCTTTGGCACGCTCGACATGTCGACTGATAACT
BS05621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 1..810 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..946 | 826..16 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 379..28 | 1760 | 100 | Minus |
3R | 32079331 | 3R | 15263687..15263944 | 826..569 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 15264352..15264542 | 569..379 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:04:08 has no hits.
BS05621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:51 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:25 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:11:18 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 12..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:31 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 12..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:31 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263685..15263944 | 569..829 | 99 | -> | Minus |
3R | 15264353..15264542 | 379..568 | 100 | -> | Minus |
3R | 15264605..15264955 | 28..378 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:11:18 Download gff for
BS05621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089407..11089666 | 569..829 | 99 | -> | Minus |
arm_3R | 11090075..11090264 | 379..568 | 100 | -> | Minus |
arm_3R | 11090327..11090677 | 28..378 | 100 | -> | Minus |
BS05621.5prime Sequence
840 bp (785 high quality bases) assembled on 2005-12-02
> BS05621.5prime
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGTAAAAGCTTTCTAGACC
BS05621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..946 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 464..815 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 15263687..15263944 | 17..274 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 274..464 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:47:49 has no hits.
BS05621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:52 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:26 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:42:44 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 14..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:50:01 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 14..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:50:01 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263685..15263944 | 14..274 | 99 | -> | Plus |
3R | 15264353..15264542 | 275..464 | 100 | -> | Plus |
3R | 15264605..15264955 | 465..815 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:42:44 Download gff for
BS05621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089407..11089666 | 14..274 | 99 | -> | Plus |
arm_3R | 11090075..11090264 | 275..464 | 100 | -> | Plus |
arm_3R | 11090327..11090677 | 465..815 | 100 | -> | Plus |
BS05621.complete Sequence
842 bp (842 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635168
> BS05621.complete
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGTAAAAGCTTTCTAGACCAT
BS05621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 810 | CG4299-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..946 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 464..815 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 15263687..15263944 | 17..274 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 274..464 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:08:18 has no hits.
BS05621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:20 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:38 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 151..965 | 14..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:00 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 136..943 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:20 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 151..965 | 14..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:18 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 136..943 | 17..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:18 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263687..15263944 | 17..274 | 100 | -> | Plus |
3R | 15264353..15264542 | 275..464 | 100 | -> | Plus |
3R | 15264605..15264955 | 465..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:00 Download gff for
BS05621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089409..11089666 | 17..274 | 100 | -> | Plus |
arm_3R | 11090075..11090264 | 275..464 | 100 | -> | Plus |
arm_3R | 11090327..11090677 | 465..815 | 100 | | Plus |
BS05621.pep Sequence
Translation from 16 to 825
> BS05621.pep
MSSVPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKA
SEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEE
EEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAA
ASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS
DNTDPVNDEIAELIKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFD
DEDGEDGEGEEEEEDEDDK*
BS05621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-PA | 269 | CG4299-PA | 1..269 | 1..269 | 1438 | 100 | Plus |
Nap1-PC | 370 | CG5330-PC | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PB | 370 | CG5330-PB | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PA | 370 | CG5330-PA | 64..353 | 42..259 | 206 | 24.3 | Plus |
mil-PA | 283 | CG5017-PA | 28..283 | 27..269 | 168 | 22.7 | Plus |