Clone Sequence Records
BS05622.3prime Sequence
924 bp (812 high quality bases) assembled on 2005-12-02
> BS05622.3prime
ATGGTCTAGAAAGCTTCTACTTGTGCAGCGCCGCCGTCTCCAGCTTCGGA
GCCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGC
ACGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCG
TGTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCG
GCGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAG
CACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACG
AGGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTG
GAGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCC
CGCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGT
AGAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGC
AGCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGAT
GCAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGA
TGCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTC
TTGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTC
CACCTCGTAGGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCC
AGCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGC
TGCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTG
GTTCCTGGCCACCAGGGATCCCACGCGGCTCAGGATCTGTCTCGCCTCGG
TCCGCCACATGTCGACTGATAACT
BS05622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 9..894 | 902..17 | 4430 | 100 | Minus |
CG7349-PA | 1314 | CG7349-RA | 635..750 | 690..575 | 455 | 95.6 | Minus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 345..308 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 138..1023 | 902..17 | 4430 | 100 | Minus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 726..108 | 1055 | 79.2 | Minus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 726..108 | 1055 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 850..410 | 2205 | 100 | Minus |
2R | 25286936 | 2R | 6808579..6808976 | 414..17 | 1975 | 99.7 | Minus |
X | 23542271 | X | 18895391..18895889 | 726..225 | 845 | 78.8 | Minus |
2R | 25286936 | 2R | 6807763..6807817 | 902..848 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:30:33 has no hits.
BS05622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:53 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:28 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:43 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 130..1026 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:15 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 130..1026 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:15 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807755..6807817 | 848..910 | 96 | -> | Minus |
2R | 6808090..6808526 | 411..847 | 100 | -> | Minus |
2R | 6808583..6808979 | 13..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:43 Download gff for
BS05622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695260..2695322 | 848..910 | 96 | -> | Minus |
arm_2R | 2695595..2696031 | 411..847 | 100 | -> | Minus |
arm_2R | 2696088..2696484 | 13..410 | 99 | | Minus |
BS05622.5prime Sequence
887 bp (818 high quality bases) assembled on 2005-12-02
> BS05622.5prime
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAGCCGGCTCCGAAGCTGGA
BS05622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
CG7349-PA | 1314 | CG7349-RA | 635..750 | 237..352 | 455 | 95.6 | Plus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 582..619 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 130..1001 | 17..887 | 4335 | 99.9 | Plus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 201..819 | 1055 | 79.2 | Plus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 201..819 | 1055 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 77..517 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 6808579..6808954 | 513..887 | 1815 | 99.5 | Plus |
X | 23542271 | X | 18895391..18895889 | 201..702 | 845 | 78.8 | Plus |
2R | 25286936 | 2R | 6807755..6807817 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:52:46 has no hits.
BS05622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:54 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:29 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:07 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..1000 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:42 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..1000 | 9..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:42 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807747..6807817 | 9..79 | 94 | -> | Plus |
2R | 6808090..6808526 | 80..516 | 100 | -> | Plus |
2R | 6808583..6808953 | 517..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:07 Download gff for
BS05622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695252..2695322 | 9..79 | 94 | -> | Plus |
arm_2R | 2695595..2696031 | 80..516 | 100 | -> | Plus |
arm_2R | 2696088..2696458 | 517..886 | 99 | | Plus |
BS05622.complete Sequence
926 bp (926 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635169
> BS05622.complete
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGACGGCGGCGCT
GCACAAGTAGAAGCTTTCTAGACCAT
BS05622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 894 | CG3283-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
CG7349-RC | 1314 | CG7349-PC | 599..1214 | 201..819 | 935 | 77.5 | Plus |
CG7349-RA | 1314 | CG7349-PA | 599..1214 | 201..819 | 935 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 130..1023 | 17..910 | 4470 | 100 | Plus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 201..819 | 935 | 77.5 | Plus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 201..819 | 935 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 77..517 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 6808579..6808976 | 513..910 | 1975 | 99.7 | Plus |
X | 23542271 | X | 18895391..18895889 | 201..702 | 845 | 78.8 | Plus |
2R | 25286936 | 2R | 6807755..6807817 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:00:57 has no hits.
BS05622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:21 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:12 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 137..1041 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:50 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 135..1023 | 22..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:21 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 137..1041 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:18 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 135..1023 | 22..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:18 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807760..6807817 | 22..79 | 100 | -> | Plus |
2R | 6808090..6808526 | 80..516 | 100 | -> | Plus |
2R | 6808583..6808976 | 517..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:50 Download gff for
BS05622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695265..2695322 | 22..79 | 100 | -> | Plus |
arm_2R | 2695595..2696031 | 80..516 | 100 | -> | Plus |
arm_2R | 2696088..2696481 | 517..910 | 100 | | Plus |
BS05622.pep Sequence
Translation from 16 to 909
> BS05622.pep
MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE
IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC
REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM
NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC
CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY
RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHK*
BS05622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-PA | 297 | CG3283-PA | 1..297 | 1..297 | 1586 | 100 | Plus |
CG7349-PC | 437 | CG7349-PC | 175..432 | 34..295 | 1032 | 71.8 | Plus |
CG7349-PA | 437 | CG7349-PA | 175..432 | 34..295 | 1032 | 71.8 | Plus |