Clone BS05622 Report

Search the DGRC for BS05622

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:56
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptSdhB-RA
Protein status:BS05622.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS05622.3prime Sequence

924 bp (812 high quality bases) assembled on 2005-12-02

> BS05622.3prime
ATGGTCTAGAAAGCTTCTACTTGTGCAGCGCCGCCGTCTCCAGCTTCGGA
GCCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGC
ACGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCG
TGTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCG
GCGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAG
CACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACG
AGGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTG
GAGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCC
CGCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGT
AGAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGC
AGCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGAT
GCAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGA
TGCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTC
TTGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTC
CACCTCGTAGGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCC
AGCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGC
TGCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTG
GTTCCTGGCCACCAGGGATCCCACGCGGCTCAGGATCTGTCTCGCCTCGG
TCCGCCACATGTCGACTGATAACT

BS05622.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 9..894 902..17 4430 100 Minus
CG7349-PA 1314 CG7349-RA 635..750 690..575 455 95.6 Minus
CG7349-PA 1314 CG7349-RA 977..1014 345..308 165 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 138..1023 902..17 4430 100 Minus
CG7349-RC 1949 CG7349-RC 815..1430 726..108 1055 79.2 Minus
CG7349-RA 1888 CG7349-RA 754..1369 726..108 1055 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 850..410 2205 100 Minus
2R 25286936 2R 6808579..6808976 414..17 1975 99.7 Minus
X 23542271 X 18895391..18895889 726..225 845 78.8 Minus
2R 25286936 2R 6807763..6807817 902..848 275 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:30:33 has no hits.

BS05622.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:53 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:28 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:10:43 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 130..1026 13..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:15 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 130..1026 13..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:15 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6807755..6807817 848..910 96 -> Minus
2R 6808090..6808526 411..847 100 -> Minus
2R 6808583..6808979 13..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:10:43 Download gff for BS05622.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695260..2695322 848..910 96 -> Minus
arm_2R 2695595..2696031 411..847 100 -> Minus
arm_2R 2696088..2696484 13..410 99   Minus

BS05622.5prime Sequence

887 bp (818 high quality bases) assembled on 2005-12-02

> BS05622.5prime
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAGCCGGCTCCGAAGCTGGA

BS05622.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 1..853 17..869 4265 100 Plus
CG7349-PA 1314 CG7349-RA 635..750 237..352 455 95.6 Plus
CG7349-PA 1314 CG7349-RA 977..1014 582..619 165 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 130..1001 17..887 4335 99.9 Plus
CG7349-RC 1949 CG7349-RC 815..1430 201..819 1055 79.2 Plus
CG7349-RA 1888 CG7349-RA 754..1369 201..819 1055 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 77..517 2205 100 Plus
2R 25286936 2R 6808579..6808954 513..887 1815 99.5 Plus
X 23542271 X 18895391..18895889 201..702 845 78.8 Plus
2R 25286936 2R 6807755..6807817 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:52:46 has no hits.

BS05622.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:54 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 1..871 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:29 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 1..871 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:27:07 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..1000 9..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:42 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..1000 9..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:42 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6807747..6807817 9..79 94 -> Plus
2R 6808090..6808526 80..516 100 -> Plus
2R 6808583..6808953 517..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:27:07 Download gff for BS05622.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695252..2695322 9..79 94 -> Plus
arm_2R 2695595..2696031 80..516 100 -> Plus
arm_2R 2696088..2696458 517..886 99   Plus

BS05622.complete Sequence

926 bp (926 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ635169

> BS05622.complete
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGACGGCGGCGCT
GCACAAGTAGAAGCTTTCTAGACCAT

BS05622.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 894 CG3283-PA 1..894 17..910 4470 100 Plus
CG7349-RC 1314 CG7349-PC 599..1214 201..819 935 77.5 Plus
CG7349-RA 1314 CG7349-PA 599..1214 201..819 935 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 130..1023 17..910 4470 100 Plus
CG7349-RC 1949 CG7349-RC 815..1430 201..819 935 77.5 Plus
CG7349-RA 1888 CG7349-RA 754..1369 201..819 935 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 77..517 2205 100 Plus
2R 25286936 2R 6808579..6808976 513..910 1975 99.7 Plus
X 23542271 X 18895391..18895889 201..702 845 78.8 Plus
2R 25286936 2R 6807755..6807817 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:00:57 has no hits.

BS05622.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:21 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:12 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 137..1041 9..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:50 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 135..1023 22..910 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:21 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 137..1041 9..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:18 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 135..1023 22..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:18 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6807760..6807817 22..79 100 -> Plus
2R 6808090..6808526 80..516 100 -> Plus
2R 6808583..6808976 517..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:50 Download gff for BS05622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695265..2695322 22..79 100 -> Plus
arm_2R 2695595..2696031 80..516 100 -> Plus
arm_2R 2696088..2696481 517..910 100   Plus

BS05622.pep Sequence

Translation from 16 to 909

> BS05622.pep
MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE
IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC
REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM
NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC
CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY
RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHK*

BS05622.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-PA 297 CG3283-PA 1..297 1..297 1586 100 Plus
CG7349-PC 437 CG7349-PC 175..432 34..295 1032 71.8 Plus
CG7349-PA 437 CG7349-PA 175..432 34..295 1032 71.8 Plus