Clone Sequence Records
BS05623.3prime Sequence
920 bp (864 high quality bases) assembled on 2005-12-02
> BS05623.3prime
ATGGTCTAGAAAGCTTCTAGTGTATCAGCTTCTGGGATCGAGCCAGATCC
AGTTGCGCCGAGGAGACGCTCGTTAGACCCTCGCGCACTGTGCTGAGGTT
CTCCTTCCATGCCTGCAGCAAATCGCGAAGCTGCTCCCATTGTGGTGCTC
CAAAGGTTCGGTGCATTGTCGATGAGATGTGTACCTTTTGATTGGCCTGA
TCTAGTCGTGCGCGTACCAGCTTTGTTTTCAGCACCTCGATGACGAAGGG
CTCCACCTCGTCTTCGTTGATCTGCAGCTCCTTGGTAAGCGTTTCGAATG
TCATCTCCGGGCTGCTCTCGGCCAGCTGCATGAAGGTCAGCAGACGCATC
TTCTTCATGTTCTGCTCATGGTTCAATCCTTGCGAGTTGACAAACTCCCT
GTGATCCTCGTAGAACTGCACGTACGCTGGCAGCTTCTCGGACACGAAGA
TGGACAGCAGGTCGTGGATGAGGTCGCCTTCCAAAAAGCGCACAGGCTTC
AGCGACAGCAGAGGATCCAGCAGGAATGTATTGGGGTCGGCCAAGGCAGT
CACAATGCACTTCATGGCATCCTCACGGGCAACACAAGCATTGTCCGCCG
TGTAGGTGCCCAGCAGCTCAATCATAACCTTGGAAGACAGCTCCAGGTTG
GTGTCCTTGGTCACGTCGTGCAGCAGGCGGTACAGCTTCTGCATCTGTTC
CGACGAAGGTGGGCAGTTGGCAAACTGGGATTTGAGCTGATCCACACCTG
AGAAGACCTCCAGCACCTGTTCGCACTGCTTGGCCACCTGGACCAGGTGG
TAGTACACATGGTAGCGTAAGGGAGAGGCGGTGTCCAGGTTGTTGAACAG
ACGCCACAACGACTGAAGGCACACCTTGCCCAATGGAAGATTGGGAGCCT
TGGTCATCTTCTCGCAGTAG
BS05623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8309-PA | 1164 | CG8309-RA | 261..1164 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 351..1254 | 920..17 | 4520 | 100 | Minus |
| Tango7-RA | 1590 | CG8309-RA | 555..1458 | 920..17 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163198..14164101 | 17..920 | 4520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:02:50 has no hits.
BS05623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:55 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 261..1164 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:31 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 261..1164 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:40 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 555..1460 | 13..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:23 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 555..1460 | 13..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:23 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163194..14164101 | 13..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:40 Download gff for
BS05623.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10050699..10051606 | 13..920 | 99 | | Plus |
BS05623.5prime Sequence
927 bp (805 high quality bases) assembled on 2005-11-29
> BS05623.5prime
GAAGTTATCAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCC
TGGACGAGCAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCC
GAAATCTCATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAA
GATCATCGGCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGA
TTGATGGAATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTG
GATCGCGGTGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGC
TCCCAATCTTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGT
TCAACAACCTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCAC
CTGGTCCAGGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGG
TGTGGATCAGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAAC
AGATGCAGAAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAAC
CTGGAGCTGTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGC
GGACAATGCTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTG
CCTTGGCCGACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAG
CCTGTGCGCTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTT
CGTGTCCGAGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGG
AGTTTGTCAACTCGCAAGGATTGAACCATGAGCAGAACATGAAGAAGATG
CGTCTGCTGACCTTCATGCAGCTGGCCGAGAGCAGCCCGGAGATGACATT
CGAAACGCTTACCAAGGAGCTGCAAAT
BS05623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8309-PA | 1164 | CG8309-RA | 1..908 | 17..924 | 4540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 90..998 | 16..924 | 4545 | 100 | Plus |
| Tango7-RA | 1590 | CG8309-RA | 294..1202 | 16..924 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163454..14164137 | 924..241 | 3420 | 100 | Minus |
| 2R | 25286936 | 2R | 14164191..14164372 | 241..60 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14164485..14164532 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:13:55 has no hits.
BS05623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:16:56 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:47:32 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:20 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1205 | 16..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:37 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1205 | 16..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:37 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14164191..14164370 | 62..241 | 100 | <- | Minus |
| 2R | 14164487..14164532 | 16..61 | 100 | | Minus |
| 2R | 14163451..14164136 | 242..927 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:20 Download gff for
BS05623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10051992..10052037 | 16..61 | 100 | | Minus |
| arm_2R | 10050956..10051641 | 242..927 | 99 | <- | Minus |
| arm_2R | 10051696..10051875 | 62..241 | 100 | <- | Minus |
BS05623.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ635170
> BS05623.complete
GAAGTTATCAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCC
TGGACGAGCAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCC
GAAATCTCATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAA
GATCATCGGCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGA
TTGATGGAATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTG
GATCGCGGTGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGC
TCCCAATCTTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGT
TCAACAACCTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCAC
CTGGTCCAGGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGG
TGTGGATCAGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAAC
AGATGCAGAAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAAC
CTGGAGCTGTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGC
GGACAATGCTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTG
CCTTGGCCGACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAG
CCTGTGCGCTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTT
CGTGTCCGAGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGG
AGTTTGTCAACTCGCAAGGATTGAACCATGAGCAGAACATGAAGAAGATG
CGTCTGCTGACCTTCATGCAGCTGGCCGAGAGCAGCCCGGAGATGACATT
CGAAACGCTTACCAAGGAGCTGCAGATCAACGAAGACGAGGTGGAGCCCT
TCGTCATCGAGGTGCTGAAAACAAAGCTGGTACGCGCACGACTAGATCAG
GCCAATCAAAAGGTACACATCTCATCGACAATGCACCGAACCTTTGGAGC
ACCACAATGGGAGCAGCTTCGCGATTTGCTGCAGGCATGGAAGGAGAACC
TCAGCACAGTGCGCGAGGGTCTAACGAGCGTCTCCTCGGCGCAACTGGAT
CTGGCTCGATCCCAGAAGCTGATACACTAGAAGCTTTCTAGACCAT
BS05623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1164 | CG8309-PB | 1..1164 | 17..1180 | 5820 | 100 | Plus |
| Tango7-RA | 1164 | CG8309-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 90..1254 | 16..1180 | 5825 | 100 | Plus |
| Tango7-RA | 1590 | CG8309-RA | 294..1458 | 16..1180 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163198..14164137 | 1180..241 | 4700 | 100 | Minus |
| 2R | 25286936 | 2R | 14164191..14164372 | 241..60 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14164485..14164532 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:10:17 has no hits.
BS05623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:54:22 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:30:14 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 338..1504 | 16..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:09 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 295..1458 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:54:22 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 338..1504 | 16..1184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:15 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 295..1458 | 17..1180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:15 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163198..14164136 | 242..1180 | 100 | <- | Minus |
| 2R | 14164191..14164370 | 62..241 | 100 | <- | Minus |
| 2R | 14164487..14164531 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:09 Download gff for
BS05623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10050703..10051641 | 242..1180 | 100 | <- | Minus |
| arm_2R | 10051696..10051875 | 62..241 | 100 | <- | Minus |
| arm_2R | 10051992..10052036 | 17..61 | 100 | | Minus |
BS05623.pep Sequence
Translation from 16 to 1179
> BS05623.pep
MTSHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVC
DVCFKDGEPSQIDGILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPL
GKVCLQSLWRLFNNLDTASPLRYHVYYHLVQVAKQCEQVLEVFSGVDQLK
SQFANCPPSSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNACV
AREDAMKCIVTALADPNTFLLDPLLSLKPVRFLEGDLIHDLLSIFVSEKL
PAYVQFYEDHREFVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTK
ELQINEDEVEPFVIEVLKTKLVRARLDQANQKVHISSTMHRTFGAPQWEQ
LRDLLQAWKENLSTVREGLTSVSSAQLDLARSQKLIH*
BS05623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-PB | 387 | CG8309-PB | 1..387 | 1..387 | 1983 | 100 | Plus |
| Tango7-PA | 387 | CG8309-PA | 1..387 | 1..387 | 1983 | 100 | Plus |
